Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 1.1e-192 676.4 337 100.0
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 4.2e-123 445.3 276 77.5
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 1.0e-108 397.5 252 77.8
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 1.8e-105 386.7 276 69.6
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 2.0e-101 373.2 276 67.4
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.5e-99 367.1 276 64.9
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.1e-98 363.2 278 66.2
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 8.1e-98 361.3 276 64.5
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 8.1e-98 361.3 278 66.9
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 2.3e-97 359.8 256 69.1
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 2.3e-97 359.8 277 65.0
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 5.2e-97 358.6 276 64.9
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 5.2e-97 358.6 277 65.3
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 1.2e-96 357.5 246 72.4
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.0e-96 356.7 255 70.2
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 2.0e-96 356.7 255 69.4
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 4.4e-96 355.5 276 65.2
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 5.8e-96 355.1 278 64.7
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 5.8e-96 355.1 277 66.8
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 7.5e-96 354.8 278 66.2
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 1.7e-95 353.6 275 65.5
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 2.2e-95 353.2 256 69.9
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 2.2e-95 353.2 276 65.2
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 2.2e-95 353.2 276 64.9
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 2.2e-95 353.2 271 64.9
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 3.7e-95 352.4 229 73.4
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 8.3e-95 351.3 255 68.6
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 8.3e-95 351.3 240 72.1
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 2.4e-94 349.7 277 65.7
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 2.4e-94 349.7 269 66.2
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.4e-94 349.7 240 72.1
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 2.4e-94 349.7 276 64.1
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 3.2e-94 349.4 207 80.2
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 3.2e-94 349.4 276 64.9
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 4.1e-94 349.0 277 63.9
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 5.4e-94 348.6 276 64.5
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 7.1e-94 348.2 277 62.1
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 1.6e-93 347.1 278 64.0
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.1e-93 346.7 277 64.3
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 2.1e-93 346.7 270 64.1
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 2.7e-93 346.3 273 64.8
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 2.7e-93 346.3 240 70.0
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.7e-93 346.3 275 64.4
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 6.0e-93 345.1 277 62.8
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.0e-92 344.4 236 72.5
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 1.7e-92 343.6 233 71.2
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 1.7e-92 343.6 242 67.4
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.7e-92 343.6 240 67.9
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 2.3e-92 343.2 273 64.1
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 3.0e-92 342.8 272 62.5
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.9e-92 342.4 252 64.3
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.9e-92 342.4 252 64.3
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 6.6e-92 341.7 229 72.1
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 1.1e-91 340.9 243 66.7
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 1.5e-91 340.5 243 66.7
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 1.5e-91 340.5 270 64.1
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 1.5e-91 340.5 252 65.1
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 1.5e-91 340.5 229 72.1
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.5e-91 340.5 240 69.2
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 9.5e-91 337.8 207 76.3
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 9.5e-91 337.8 277 63.5
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 9.5e-91 337.8 271 64.9
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 2.1e-90 336.7 254 66.1
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 2.8e-90 336.3 275 62.5
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 2.8e-90 336.3 276 61.2
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 4.7e-90 335.5 253 64.8
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 4.7e-90 335.5 204 78.4
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 6.2e-90 335.1 280 61.1
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 8.1e-90 334.7 271 64.6
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 1.1e-89 334.3 242 64.9
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.8e-89 333.6 246 65.9
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 1.8e-89 333.6 237 67.9
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 1.8e-89 333.6 222 72.5
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 1.8e-89 333.6 283 60.4
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.3e-89 333.2 240 66.2
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 2.3e-89 333.2 240 65.8
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 3.1e-89 332.8 273 60.8
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 5.2e-89 332.0 276 61.2
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 6.8e-89 331.6 240 68.3
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 6.8e-89 331.6 234 69.7
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 8.9e-89 331.3 251 65.3
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 2.0e-88 330.1 204 77.0
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 2.0e-88 330.1 205 76.1
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 2.6e-88 329.7 253 63.6
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 4.4e-88 328.9 224 70.5
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 4.4e-88 328.9 222 69.8
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 7.6e-88 328.2 237 66.2
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 9.9e-88 327.8 237 66.7
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.3e-87 327.4 237 66.2
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 1.7e-87 327.0 266 60.9
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.2e-87 326.6 207 74.4
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 2.2e-87 326.6 280 58.6
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 3.7e-87 325.9 253 63.6
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 3.7e-87 325.9 243 65.4
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 4.9e-87 325.5 253 62.8
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 6.4e-87 325.1 233 66.5
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 1.2e-85 320.9 237 66.7
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 1.6e-85 320.5 250 63.2
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 7.8e-85 318.2 276 61.2
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 6.6e-84 315.1 276 60.9
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 5.6e-83 312.0 245 62.0
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 5.6e-83 312.0 224 67.4
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.1e-82 310.1 205 74.6
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 4.0e-81 305.8 245 62.4
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 1.2e-80 304.3 227 66.5
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.9e-79 299.7 196 73.5
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 8.4e-79 298.1 211 66.4
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 1.6e-77 293.9 224 62.9
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 8.7e-76 288.1 255 60.0
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 1.5e-72 277.3 209 65.1
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 3.8e-71 272.7 262 55.3
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 1.1e-70 271.2 181 69.1
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.7e-68 263.8 208 61.1
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 3.0e-68 263.1 207 61.4
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.3e-66 257.7 213 61.0
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.2e-61 241.1 182 68.1
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 5.1e-60 235.7 211 54.5
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 1.5e-59 234.2 225 54.7
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.1e-57 228.0 207 53.6
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 6.9e-57 225.3 209 51.7
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.0e-55 221.5 197 61.4
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.9e-54 217.2 212 52.8
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 1.9e-54 217.2 210 52.9
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 4.2e-54 216.1 250 43.6
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 1.5e-51 207.6 177 59.3
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 6.3e-50 202.2 119 74.8
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 3.0e-44 183.3 237 36.7
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 3.3e-43 179.9 109 78.9
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 2.5e-38 163.7 212 40.1
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 7.7e-32 142.1 118 62.7
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 2.9e-31 140.2 130 56.2
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 2.5e-30 137.1 102 68.6
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 1.1e-25 121.7 91 61.5
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.5e-22 111.3 88 64.8
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 2.3e-20 104.0 110 42.7
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 1.6e-16 91.3 61 72.1
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 1.1e-14 85.1 110 43.6
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 5.7e-11 72.8 44 79.5
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 7.5e-11 72.4 269 28.6
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 7.0e-09 65.9 91 47.3


User provided reference genes

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