Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1925.2 984 100.0
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1651.3 959 87.2
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1618.6 1016 81.7
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1453.3 989 74.3
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1441.8 989 73.6
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1423.7 992 72.3
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1418.7 989 72.9
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1417.1 988 72.4
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1403.3 989 71.4
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1401.7 956 72.7
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1394.0 988 70.6
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1389.4 989 70.4
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1388.2 986 70.9
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1387.9 987 70.8
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1385.5 986 71.4
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1383.6 988 70.2
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1382.5 989 70.3
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1378.6 987 70.1
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1374.4 988 69.4
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1374.0 989 69.7
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1373.2 989 69.1
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1372.8 985 69.8
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1372.5 989 69.6
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1370.9 989 69.2
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1369.8 989 70.1
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1368.6 989 69.5
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1367.8 987 69.4
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1365.9 987 69.1
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1365.5 989 69.3
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1365.1 989 68.3
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1363.2 987 69.1
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1363.2 988 69.2
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1363.2 988 68.6
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1363.2 989 68.8
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1362.4 995 69.2
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1359.4 989 68.8
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1359.0 987 68.8
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1357.8 989 69.5
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1357.4 989 68.9
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1357.0 988 68.5
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1357.0 989 69.2
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1356.7 993 68.5
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1356.7 989 68.6
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1355.1 987 69.9
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1354.7 987 69.9
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1353.2 989 69.0
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1352.4 989 68.3
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1352.0 1009 69.3
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1351.3 1012 67.6
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1350.1 989 68.3
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1349.3 988 68.5
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1348.2 989 68.4
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1347.4 989 68.1
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1345.9 989 67.6
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1344.3 982 68.1
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1343.9 988 68.2
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1343.6 1085 65.5
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1343.6 988 68.0
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1338.2 987 69.3
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1337.4 988 68.0
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1336.6 987 67.1
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1334.3 988 67.9
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1333.9 994 67.9
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1333.9 989 68.1
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1331.6 990 67.9
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1330.5 990 67.1
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1328.9 985 67.7
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1327.8 993 67.9
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1325.1 987 67.1
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1324.3 988 67.3
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1320.8 987 66.7
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1318.1 989 66.0
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1317.8 987 67.0
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1317.8 990 66.5
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1317.0 989 66.0
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1315.8 987 66.5
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1314.7 987 66.5
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1312.0 986 67.0
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1311.6 990 67.6
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1310.4 993 66.6
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1308.9 989 65.5
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1308.9 989 66.2
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1307.0 990 67.3
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1302.3 988 65.5
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1295.4 989 65.2
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1294.6 988 65.3
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1293.9 988 65.1
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1293.5 989 64.9
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1293.1 988 64.9
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1292.3 989 65.7
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1290.8 989 65.0
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1290.4 1008 64.2
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1289.6 1002 64.2
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1288.1 989 64.9
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1286.6 989 65.0
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1286.2 987 65.0
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1282.3 1084 61.3
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1277.7 955 67.1
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1277.3 987 64.9
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1276.2 1015 63.4
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1273.8 988 63.2
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1273.1 988 63.6
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1272.7 988 63.6
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1268.1 994 63.0
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1264.6 988 63.2
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1248.0 981 63.2
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1247.6 970 66.3
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1247.3 980 64.0
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1246.1 902 69.5
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1236.1 989 64.0
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1235.7 989 63.9
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1219.9 1004 61.9
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1197.6 992 59.9
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1189.1 989 61.9
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1175.2 989 61.0
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1171.4 978 59.5
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1168.3 900 65.4
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1165.2 989 60.4
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1158.3 996 58.7
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1148.3 1016 59.3
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1142.5 849 67.4
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1097.4 882 63.6
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1096.6 955 59.5
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.6e-308 1061.6 850 61.5
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 6.0e-295 1017.7 810 62.5
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 4.8e-292 1008.1 990 52.4
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 1.1e-288 996.9 991 52.6
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 2.7e-250 869.4 660 66.7
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 9.8e-245 850.9 956 48.1
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.6e-237 826.2 544 75.7
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.4e-227 793.1 691 58.2
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 3.5e-226 789.3 660 62.9
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 9.3e-203 711.4 875 44.1
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.4e-198 697.6 528 66.7
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.5e-184 650.2 811 48.2
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 3.2e-163 580.1 362 77.9
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.4e-153 548.1 424 64.6
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 1.8e-153 547.7 921 39.5
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 2.7e-141 507.3 296 84.5
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 8.5e-140 502.3 296 83.8
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 7.5e-136 489.2 836 37.0
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 4.0e-129 466.8 282 80.9
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 4.3e-123 446.8 1040 30.9
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.3e-108 398.7 336 59.2
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 1.5e-107 395.2 997 31.3
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.3e-100 372.1 257 73.2
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 2.5e-99 367.9 659 39.8
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 2.0e-88 331.6 382 47.6
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 2.9e-79 301.2 430 40.0
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 2.9e-79 301.2 372 45.7
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 4.9e-79 300.4 258 56.2
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 8.4e-79 299.7 320 49.4
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 3.9e-68 264.2 251 55.0
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 1.5e-56 225.7 147 76.9
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 5.5e-54 217.2 185 56.2
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 6.1e-53 213.8 129 76.7
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 6.7e-52 210.3 125 78.4
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 2.9e-47 194.9 125 75.2
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 1.4e-46 192.6 160 65.6
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 1.0e-44 186.4 126 73.0
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 7.4e-43 180.3 1027 22.4
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 2.4e-41 175.3 200 52.0
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 4.5e-40 171.0 101 77.2
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 1.0e-39 169.9 101 77.2
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 1.0e-39 169.9 101 77.2
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 5.0e-31 141.0 85 80.0
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 1.8e-20 105.9 149 47.7
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 3.0e-20 105.1 121 53.7
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 2.8e-18 98.6 63 76.2
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 1.4e-17 96.3 71 71.8
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 4.1e-17 94.7 62 67.7
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 4.1e-17 94.7 53 83.0
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 9.1e-17 93.6 171 35.7
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 1.2e-16 93.2 81 56.8
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 3.5e-16 91.7 77 58.4
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 5.9e-16 90.9 67 70.1
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 1.1e-14 86.7 60 71.7
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 1.5e-14 86.3 136 39.0
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 3.3e-14 85.1 47 80.9
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.0e-12 80.1 60 66.7
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.3e-12 79.0 60 66.7
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 9.8e-11 73.6 121 40.5
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 1.9e-06 59.3 37 78.4
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 3.3e-06 58.5 115 32.2
Psat0s4854g0040 Pisum sativum HOM05D001108 ORTHO05D001619 5.6e-06 57.8 120 32.5


User provided reference genes

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