Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 1.5e-47 192.6 100 100.0
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 8.9e-37 156.8 100 81.0
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 1.3e-19 99.8 111 54.1
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 1.9e-18 95.9 106 57.5
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 9.3e-18 93.6 108 56.5
ECA246G2262 Erigeron canadensis HOM05D007293 ORTHO05D009143 3.0e-16 88.6 100 59.0
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 3.9e-16 88.2 104 51.9
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 3.9e-16 88.2 103 56.3
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 6.7e-16 87.4 110 48.2
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 2.5e-15 85.5 109 50.5
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 5.6e-15 84.3 108 53.7
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.6e-14 82.8 103 47.6
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 4.8e-14 81.3 105 52.4
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 6.2e-14 80.9 51 80.4
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 6.2e-14 80.9 111 46.8
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 1.4e-13 79.7 55 76.4
Rhsim10G0022800 Rhododendron simsii HOM05D007293 ORTHO05D009143 5.3e-13 77.8 104 51.0
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 1.2e-12 76.6 47 85.1
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 1.5e-12 76.3 104 49.0
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 2.6e-12 75.5 85 54.1
CSS0016211 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 5.8e-12 74.3 103 45.6
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 5.8e-12 74.3 102 47.1
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 7.6e-12 73.9 104 46.2
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 1.3e-11 73.2 107 46.7
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.3e-11 73.2 106 45.3
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 1.3e-11 73.2 87 54.0
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 1.7e-11 72.8 102 50.0
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 1.7e-11 72.8 105 47.6
CSS0001505 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.2e-11 72.4 98 48.0
CSS0049977 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.9e-11 72.0 98 48.0
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 2.9e-11 72.0 100 44.0
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 2.9e-11 72.0 105 46.7
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 2.9e-11 72.0 51 74.5
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 4.9e-11 71.2 108 46.3
Hma1.2p1_0802F.1_g220360 Hydrangea macrophylla HOM05D007293 ORTHO05D009143 6.5e-11 70.9 106 48.1
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 6.5e-11 70.9 105 47.6
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 8.4e-11 70.5 108 44.4
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 8.4e-11 70.5 48 77.1
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 1.1e-10 70.1 101 47.5
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 1.1e-10 70.1 105 48.6
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 1.4e-10 69.7 49 71.4
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 1.9e-10 69.3 104 48.1
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 1.9e-10 69.3 49 73.5
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.9e-10 69.3 54 70.4
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 1.9e-10 69.3 100 46.0
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 2.5e-10 68.9 68 55.9
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 3.2e-10 68.6 105 46.7
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 3.2e-10 68.6 103 46.6
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 5.5e-10 67.8 105 44.8
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 5.5e-10 67.8 105 44.8
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 7.1e-10 67.4 104 49.0
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 7.1e-10 67.4 112 44.6
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 9.3e-10 67.0 51 70.6
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 1.2e-09 66.6 101 47.5
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.2e-09 66.6 54 66.7
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 1.2e-09 66.6 54 66.7
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 1.2e-09 66.6 63 60.3
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 1.6e-09 66.2 96 47.9
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 3.5e-09 65.1 100 45.0
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 4.6e-09 64.7 74 48.6
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 6.0e-09 64.3 48 70.8
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 6.0e-09 64.3 106 43.4
MBI10_g11075_MAGBIO Magnolia biondii HOM05D007293 ORTHO05D009143 6.0e-09 64.3 54 64.8
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 7.9e-09 63.9 105 45.7
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 1.0e-08 63.5 88 47.7
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 1.3e-08 63.2 110 41.8
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 1.3e-08 63.2 110 45.5
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 5.1e-08 61.2 49 69.4
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 8.7e-08 60.5 103 46.6
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 1.1e-07 60.1 54 57.4
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 1.5e-07 59.7 110 40.9
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 1.9e-07 59.3 105 43.8
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 2.5e-07 58.9 110 40.0
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 2.5e-07 58.9 58 60.3
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 2.5e-07 58.9 103 41.7
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 3.3e-07 58.5 110 40.9
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 3.3e-07 58.5 104 42.3
PSO063G5020 Papaver somniferum HOM05D007293 ORTHO05D009143 3.3e-07 58.5 85 50.6
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 3.3e-07 58.5 45 73.3
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 3.3e-07 58.5 101 40.6
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 4.3e-07 58.2 49 67.3
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 4.3e-07 58.2 110 40.0
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 4.3e-07 58.2 100 43.0
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 4.3e-07 58.2 69 43.5
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 5.7e-07 57.8 100 42.0
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 7.4e-07 57.4 99 37.4
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 7.4e-07 57.4 101 41.6
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 7.4e-07 57.4 90 41.1
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 7.4e-07 57.4 42 71.4
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 9.6e-07 57.0 101 38.6
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 9.6e-07 57.0 67 47.8
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 9.6e-07 57.0 68 44.1
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 9.6e-07 57.0 68 44.1
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 9.6e-07 57.0 93 37.6
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 1.3e-06 56.6 104 41.3
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 1.3e-06 56.6 42 69.0
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 1.3e-06 56.6 42 69.0
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 1.3e-06 56.6 104 41.3
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 1.6e-06 56.2 109 44.0
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 1.6e-06 56.2 105 41.9
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 2.1e-06 55.8 78 39.7
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 2.1e-06 55.8 79 39.2
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 2.8e-06 55.5 80 41.2
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 2.8e-06 55.5 54 55.6
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 2.8e-06 55.5 93 39.8
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 3.7e-06 55.1 47 63.8
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 3.7e-06 55.1 81 42.0
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 4.8e-06 54.7 103 40.8
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 4.8e-06 54.7 44 61.4
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 4.8e-06 54.7 91 38.5
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 4.8e-06 54.7 48 58.3
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 4.8e-06 54.7 51 52.9
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 4.8e-06 54.7 100 41.0
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 6.2e-06 54.3 51 51.0
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 6.2e-06 54.3 54 51.9
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 6.2e-06 54.3 61 47.5
PSO832G1108 Papaver somniferum HOM05D007293 ORTHO05D009143 6.2e-06 54.3 85 50.6
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 6.2e-06 54.3 49 53.1
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 8.2e-06 53.9 94 36.2
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 8.2e-06 53.9 88 42.0
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 8.2e-06 53.9 89 40.4
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 8.2e-06 53.9 47 63.8
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 8.2e-06 53.9 99 39.4
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 8.2e-06 53.9 100 37.0


User provided reference genes

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