Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0218761 Helianthus annuus HOM05D000104 ORTHO05D008354 9.3e-101 370.2 181 100.0
HanXRQChr08g0218751 Helianthus annuus HOM05D000104 ORTHO05D008354 1.4e-51 206.8 101 98.0
HanXRQChr17g0559881 Helianthus annuus HOM05D000104 ORTHO05D008354 7.5e-50 201.1 101 95.0
HanXRQChr06g0168811 Helianthus annuus HOM05D000104 ORTHO05D008354 1.4e-48 196.8 101 93.1
ECA236G2937 Erigeron canadensis HOM05D000104 ORTHO05D008354 5.4e-40 168.3 100 83.0
Lsat_1_v5_gn_7_11220 Lactuca sativa HOM05D000104 ORTHO05D008354 1.1e-37 160.6 102 74.5
Lj7C540T8 Lonicera japonica HOM05D000104 ORTHO05D008354 1.1e-37 160.6 101 74.3
FAN06G0717 Fragaria x ananassa HOM05D000104 ORTHO05D008354 2.1e-36 156.4 100 71.0
FAN06G1402 Fragaria x ananassa HOM05D000104 ORTHO05D008354 2.1e-36 156.4 100 71.0
AUR62004136 Chenopodium quinoa HOM05D000104 ORTHO05D008354 2.8e-36 156.0 118 68.6
GSVIVG01018218001 Vitis vinifera HOM05D000104 ORTHO05D008354 3.6e-36 155.6 102 72.5
FvH4_7g09450 Fragaria vesca HOM05D000104 ORTHO05D008354 6.1e-36 154.8 100 71.0
CAN.G899.29 Capsicum annuum HOM05D000104 ORTHO05D008354 1.0e-35 154.1 102 73.5
Prupe.2G122400 Prunus persica HOM05D000104 ORTHO05D008354 1.4e-35 153.7 101 74.3
ClCG06G002490 Citrullus lanatus HOM05D000104 ORTHO05D008354 1.8e-35 153.3 100 72.0
MBI04_g09528_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D008354 1.8e-35 153.3 101 70.3
MD07G1098400 Malus domestica HOM05D000104 ORTHO05D008354 1.8e-35 153.3 101 72.3
RcHm_v2.0_Chr1g0346091 Rosa chinensis HOM05D000104 ORTHO05D008354 1.8e-35 153.3 101 71.3
Atru.chr5.194 Acer truncatum HOM05D000104 ORTHO05D008354 3.1e-35 152.5 100 71.0
Nitab4.5_0003110g0070 Nicotiana tabacum HOM05D000104 ORTHO05D008354 3.1e-35 152.5 102 72.5
QL04p034775 Quercus lobata HOM05D000104 ORTHO05D008354 3.1e-35 152.5 101 70.3
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 4.0e-35 152.1 100 68.0
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 4.0e-35 152.1 100 68.0
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 4.0e-35 152.1 100 68.0
Rhsim07G0033300 Rhododendron simsii HOM05D001240 ORTHO05D008354 4.0e-35 152.1 101 73.3
Potri.014G056700 Populus trichocarpa HOM05D000104 ORTHO05D008354 6.8e-35 151.4 101 71.3
Lalb_Chr03g0040101 Lupinus albus HOM05D000104 ORTHO05D008354 8.9e-35 151.0 101 71.3
Sopen01g036380 Solanum pennellii HOM05D000104 ORTHO05D008354 8.9e-35 151.0 101 73.3
CSS0013679 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D008354 1.2e-34 150.6 101 71.3
Nitab4.5_0004415g0040 Nicotiana tabacum HOM05D000104 ORTHO05D008354 1.2e-34 150.6 103 74.8
CANSAT21G1228 Cannabis sativa HOM05D000104 ORTHO05D008354 1.5e-34 150.2 105 68.6
Migut.B01563 Erythranthe guttata HOM05D000104 ORTHO05D008354 1.5e-34 150.2 102 70.6
Oeu009614.2 Olea europaea HOM05D000104 ORTHO05D008354 1.5e-34 150.2 100 68.0
Peaxi162Scf00377g00830 Petunia axillaris HOM05D000104 ORTHO05D008354 2.0e-34 149.8 102 71.6
TPR.G39134 Trifolium pratense HOM05D000104 ORTHO05D008354 2.0e-34 149.8 101 70.3
vmacro13471 Vaccinium macrocarpon HOM05D000104 ORTHO05D008354 2.0e-34 149.8 136 55.9
EL10Ac1g00807 Beta vulgaris HOM05D000104 ORTHO05D008354 2.6e-34 149.4 102 70.6
CsaV3_6G008630 Cucumis sativus L. HOM05D000104 ORTHO05D008354 2.6e-34 149.4 100 69.0
Sed0015521 Sechium edule HOM05D000104 ORTHO05D008354 3.4e-34 149.1 101 67.3
Dinv44094 Davidia involucrata HOM05D000104 ORTHO05D008354 4.4e-34 148.7 101 71.3
FAN10G3495 Fragaria x ananassa HOM05D000104 ORTHO05D008354 5.8e-34 148.3 102 68.6
Thecc.01G387600 Theobroma cacao HOM05D000104 ORTHO05D008354 5.8e-34 148.3 100 72.0
Ciclev10018815m.g Citrus clementina HOM05D000104 ORTHO05D008354 1.3e-33 147.1 100 72.0
MELO3C022279.2 Cucumis melo HOM05D000104 ORTHO05D008354 1.3e-33 147.1 117 60.7
Eucgr.D02514 Eucalyptus grandis HOM05D000104 ORTHO05D008354 1.3e-33 147.1 105 65.7
FAN10G0005 Fragaria x ananassa HOM05D000104 ORTHO05D008354 1.3e-33 147.1 102 68.6
Manes.04G038200 Manihot esculenta HOM05D000104 ORTHO05D008354 1.3e-33 147.1 101 67.3
Ah.01g007990 Amaranthus hybridus HOM05D000104 ORTHO05D008354 1.7e-33 146.7 101 70.3
Carub.0004s2758 Capsella rubella HOM05D000104 ORTHO05D008354 1.7e-33 146.7 102 67.6
CiPaw.13G029900 Carya illinoinensis HOM05D000104 ORTHO05D008354 1.7e-33 146.7 101 70.3
PGR004G1640 Punica granatum HOM05D000104 ORTHO05D008354 1.7e-33 146.7 100 71.0
SGA_v2.0_scaffold153G36942 Striga asiatica HOM05D000104 ORTHO05D008354 2.2e-33 146.4 101 69.3
TAR503G0004 Trochodendron aralioides HOM05D000104 ORTHO05D008354 2.2e-33 146.4 101 69.3
MSTRG.20709 Avicennia marina HOM05D000104 ORTHO05D008354 2.9e-33 146.0 101 70.3
VMungo1383G3658 Vigna mungo HOM05D018335 ORTHO05D008354 2.9e-33 146.0 110 64.5
AL4G44080 Arabidopsis lyrata HOM05D000104 ORTHO05D008354 3.7e-33 145.6 102 66.7
Hund17069 Selenicereus undatus HOM05D000104 ORTHO05D008354 3.7e-33 145.6 103 68.0
Duzib133G0313 Durio zibethinus HOM05D000104 ORTHO05D008354 4.9e-33 145.2 100 69.0
C04p05940 Brassica napus HOM05D000104 ORTHO05D008354 6.4e-33 144.8 102 65.7
BolC4t22225H Brassica oleracea HOM05D000104 ORTHO05D008354 6.4e-33 144.8 102 65.7
Haze_02746 Corylus avellana HOM05D000104 ORTHO05D008354 8.3e-33 144.4 101 70.3
Thhalv10001305m.g Eutrema salsugineum HOM05D000104 ORTHO05D008354 8.3e-33 144.4 102 66.7
CARHR140240 Cardamine hirsuta HOM05D000104 ORTHO05D008354 1.1e-32 144.1 102 65.7
Ca_07354_v3 Cicer arietinum L. HOM05D000104 ORTHO05D008354 1.1e-32 144.1 101 68.3
PSO407G0156 Papaver somniferum HOM05D000104 ORTHO05D008354 1.1e-32 144.1 103 67.0
A05p05090 Brassica napus HOM05D000104 ORTHO05D008354 1.4e-32 143.7 102 65.7
BraA05t19483Z Brassica rapa HOM05D000104 ORTHO05D008354 1.4e-32 143.7 102 65.7
Cc02_g24760 Coffea canephora HOM05D000104 ORTHO05D008354 1.9e-32 143.3 101 66.3
COL.COLO4_12448 Corchorus olitorius HOM05D000104 ORTHO05D008354 2.4e-32 142.9 100 70.0
AT2G44980 Arabidopsis thaliana HOM05D000104 ORTHO05D008354 3.2e-32 142.5 102 65.7
Psat3g158520 Pisum sativum HOM05D000104 ORTHO05D008354 3.2e-32 142.5 101 69.3
Nn1g00930 Nelumbo nucifera HOM05D000104 ORTHO05D008354 4.1e-32 142.1 100 65.0
Sp4g27050 Schrenkiella parvula HOM05D000104 ORTHO05D008354 4.1e-32 142.1 102 65.7
Medtr7g045505 Medicago truncatula HOM05D000104 ORTHO05D008354 5.4e-32 141.7 101 68.3
Aa31LG1G26570 Aethionema arabicum HOM05D000104 ORTHO05D008354 7.0e-32 141.4 157 48.4
Sabra14G0041300 Salix brachista HOM05D000104 ORTHO05D008354 7.0e-32 141.4 101 67.3
Aqoxy5G04143 Aquilegia oxysepala HOM05D000104 ORTHO05D008354 1.2e-31 140.6 100 62.0
Sc23g0004880 Simmondsia chinensis HOM05D000104 ORTHO05D008354 2.0e-31 139.8 100 66.0
Aqoxy1G01633 Aquilegia oxysepala HOM05D000104 ORTHO05D008354 2.7e-31 139.4 100 61.0
Medtr7g039320 Medicago truncatula HOM05D000104 ORTHO05D008354 2.7e-31 139.4 101 67.3
Phvul.008G141500 Phaseolus vulgaris HOM05D000104 ORTHO05D008354 2.7e-31 139.4 101 67.3
arahy.Tifrunner.gnm1.ann1.195NUB Arachis hypogaea HOM05D000104 ORTHO05D008354 4.6e-31 138.7 101 67.3
arahy.Tifrunner.gnm1.ann1.G09REB Arachis hypogaea HOM05D000104 ORTHO05D008354 4.6e-31 138.7 101 67.3
PSO170G6209 Papaver somniferum HOM05D000104 ORTHO05D008354 7.8e-31 137.9 102 65.7
SalBow5G1524 Salvia bowleyana HOM05D000104 ORTHO05D008354 7.8e-31 137.9 101 65.3
DCAR_032106 Daucus carota HOM05D000104 ORTHO05D008354 6.6e-30 134.8 105 62.9
THA.LOC104802482 Tarenaya hassleriana HOM05D000104 ORTHO05D008354 8.6e-30 134.4 101 61.4
Lj1g0027884 Lotus japonicus HOM05D000104 ORTHO05D008354 1.1e-29 134.0 102 66.7
Glyma.01G073400 Glycine max HOM05D000104 ORTHO05D008354 1.6e-28 130.2 100 63.0
Lj1g0010595 Lotus japonicus HOM05D000104 ORTHO05D008354 1.5e-26 123.6 102 61.8
HPP92_022464 Vanilla planifolia HOM05D000104 ORTHO05D008354 5.8e-26 121.7 100 60.0
Zm00001eb404510 Zea mays HOM05D000104 ORTHO05D008354 2.1e-23 113.2 84 64.3
Mapoly0049s0091 Marchantia polymorpha HOM05D000104 ORTHO05D008354 2.8e-20 102.8 130 41.5
Pp3c10_6710 Physcomitrium patens HOM05D000104 ORTHO05D008354 3.6e-20 102.4 119 50.4
HanXRQChr12g0364971 Helianthus annuus HOM05D000104 ORTHO05D226089 5.1e-06 55.5 29 82.8


User provided reference genes

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