Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 3.4e-234 814.7 435 100.0
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 4.4e-173 611.7 427 77.0
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.9e-163 579.7 419 78.3
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 4.4e-149 531.9 435 67.1
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 4.4e-149 531.9 436 68.3
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 1.8e-142 510.0 349 78.2
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 2.2e-140 503.1 435 65.3
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 5.4e-139 498.4 437 65.2
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 4.6e-138 495.4 436 65.8
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 3.0e-137 492.7 437 64.5
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 3.9e-137 492.3 433 65.1
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 1.5e-136 490.3 460 61.7
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 1.9e-136 490.0 439 64.2
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 1.9e-136 490.0 428 66.6
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 3.3e-136 489.2 438 63.7
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 4.3e-136 488.8 435 63.4
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 5.6e-136 488.4 435 63.7
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 2.1e-135 486.5 436 65.4
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 2.1e-135 486.5 435 63.4
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 2.8e-135 486.1 387 68.7
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 8.1e-135 484.6 367 72.5
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 1.8e-134 483.4 421 64.8
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 2.4e-134 483.0 435 63.2
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 2.4e-134 483.0 330 77.9
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 4.0e-134 482.3 431 62.6
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 9.0e-134 481.1 436 63.1
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 3.4e-133 479.2 435 61.4
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 1.7e-132 476.9 369 71.3
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 2.9e-132 476.1 343 73.5
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.9e-132 476.1 343 73.5
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 4.9e-132 475.3 435 63.0
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 4.9e-132 475.3 465 61.5
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 6.4e-132 474.9 435 62.3
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 1.9e-131 473.4 435 63.7
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.2e-131 472.6 343 73.2
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 2.3e-129 466.5 438 60.7
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 3.9e-129 465.7 381 67.2
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 5.1e-129 465.3 436 62.2
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 8.7e-129 464.5 378 67.2
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 1.9e-128 463.4 401 63.6
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.3e-128 462.6 357 70.3
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 2.8e-127 459.5 345 71.3
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 3.7e-127 459.1 432 63.0
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 4.8e-127 458.8 438 60.3
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.2e-127 458.4 343 72.3
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 1.1e-126 457.6 383 66.1
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 1.1e-126 457.6 362 68.0
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 2.4e-126 456.4 435 60.2
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.2e-125 454.1 317 75.7
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 1.2e-125 454.1 435 59.5
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.0e-125 453.4 427 60.9
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 2.0e-125 453.4 340 70.9
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 1.0e-124 451.1 389 64.3
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 1.0e-124 451.1 388 66.0
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 2.2e-124 449.9 374 65.2
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 2.2e-124 449.9 385 64.4
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 6.5e-124 448.4 362 66.0
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 2.5e-123 446.4 447 60.0
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 7.1e-123 444.9 428 57.2
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 6.1e-122 441.8 350 68.3
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 3.0e-121 439.5 374 65.2
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 6.7e-121 438.3 339 69.3
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.9e-120 436.8 402 62.4
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 4.3e-120 435.6 372 64.5
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 1.3e-119 434.1 363 65.8
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 2.2e-119 433.3 362 65.7
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 8.2e-119 431.4 377 63.9
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 8.2e-119 431.4 377 63.9
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 5.3e-118 428.7 381 63.8
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 1.0e-116 424.5 331 67.7
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 1.9e-115 420.2 351 63.8
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 7.2e-115 418.3 380 60.0
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 1.4e-113 414.1 402 62.2
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.4e-113 414.1 389 62.0
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 3.0e-113 412.9 373 59.2
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 6.7e-113 411.8 376 63.8
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 2.9e-108 396.4 383 57.2
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 4.2e-107 392.5 282 71.6
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 1.2e-106 391.0 339 59.3
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 1.5e-104 384.0 327 62.1
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 9.7e-104 381.3 400 54.8
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 3.1e-102 376.3 376 58.0
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 2.9e-100 369.8 327 59.3
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 8.5e-100 368.2 372 57.8
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 1.5e-96 357.5 294 67.0
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 4.1e-94 349.4 370 52.2
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 4.2e-91 339.3 373 54.2
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 9.4e-91 338.2 497 44.7
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 2.3e-89 333.6 337 60.2
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.1e-86 322.8 381 51.2
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 7.2e-83 312.0 342 53.5
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 2.3e-81 307.0 306 60.1
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.8e-78 297.4 236 66.1
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 6.6e-76 288.9 488 43.0
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 2.8e-74 283.5 223 69.1
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 8.0e-74 282.0 383 46.0
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 2.9e-71 273.5 245 65.7
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 1.1e-70 271.6 216 68.5
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 2.7e-69 266.9 226 61.9
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 3.5e-69 266.5 216 67.6
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 1.9e-67 260.8 213 66.7
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 9.5e-67 258.5 215 64.7
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 9.8e-64 248.4 424 40.3
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 6.0e-61 239.2 329 42.2
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 2.3e-60 237.3 251 52.6
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 2.1e-58 230.7 241 58.5
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 4.4e-56 223.0 336 42.6
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.1e-54 218.4 331 41.4
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 3.9e-52 209.9 238 52.1
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 1.1e-51 208.4 235 53.6
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 2.6e-48 197.2 224 56.7
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 9.9e-48 195.3 219 51.1
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 6.6e-44 182.6 362 37.3
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 2.8e-42 177.2 153 64.1
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.4e-41 174.1 355 35.5
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 1.2e-40 171.8 127 68.5
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 9.9e-40 168.7 239 41.8
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 1.1e-38 165.2 202 52.0
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 6.0e-37 159.5 292 34.6
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 5.1e-36 156.4 167 55.7
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 6.6e-36 156.0 134 59.7
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 2.1e-34 151.0 102 76.5
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 1.8e-33 147.9 162 54.9
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.6e-32 144.1 333 31.2
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.4e-32 143.7 326 33.7
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 5.8e-32 142.9 123 59.3
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 6.4e-31 139.4 364 28.8
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 7.1e-30 136.0 84 78.6
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 1.6e-29 134.8 104 70.2
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.7e-29 134.0 124 63.7
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.0e-28 132.1 394 31.2
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.9e-27 127.9 82 82.9
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.6e-26 123.6 99 64.6
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 6.9e-25 119.4 117 62.4
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 1.1e-22 112.1 80 77.5
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 7.1e-22 109.4 104 55.8
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 2.1e-21 107.8 109 49.5
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 5.1e-20 103.2 104 56.7
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 6.7e-20 102.8 97 53.6
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 8.7e-20 102.4 67 82.1
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 1.1e-19 102.1 98 52.0
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 1.3e-18 98.6 65 70.8
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 2.8e-18 97.4 58 77.6
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 2.5e-14 84.3 59 67.8
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 2.5e-14 84.3 95 44.2
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 3.2e-14 84.0 107 47.7
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 5.5e-14 83.2 59 71.2
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.7e-12 76.3 55 67.3
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 3.7e-10 70.5 62 58.1
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 8.2e-10 69.3 54 63.0
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 1.4e-09 68.6 353 26.3
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 2.2e-07 61.2 35 77.1
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 2.2e-07 61.2 57 54.4
PGSC0003DMG400019027 Solanum tuberosum HOM05D000943 ORTHO05D008314 1.9e-06 58.2 312 26.9
Cre02.g095085 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 2.5e-06 57.8 158 27.2
MELO3C034937.2 Cucumis melo HOM05D005062 ORTHO05D006410 3.2e-06 57.4 77 42.9
DCAR_017587 Daucus carota HOM05D000943 ORTHO05D008314 7.2e-06 56.2 270 28.1
unitig_62.g23077 Utricularia gibba HOM05D000943 ORTHO05D008314 7.2e-06 56.2 343 25.9


User provided reference genes

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