Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 5.9e-234 813.9 437 100.0
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 8.2e-135 484.6 431 62.6
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 2.2e-132 476.5 411 63.7
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 6.1e-130 468.4 405 61.5
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 3.9e-129 465.7 431 60.1
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 9.7e-128 461.1 416 63.0
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 2.0e-120 436.8 367 62.9
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 4.4e-120 435.6 336 67.0
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.4e-118 430.6 417 58.0
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 3.1e-118 429.5 335 65.7
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.5e-117 427.2 374 60.7
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 2.0e-117 426.8 337 65.9
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 2.6e-117 426.4 372 61.0
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 4.5e-117 425.6 415 56.1
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.0e-116 424.5 361 61.8
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 5.0e-116 422.2 392 58.4
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 7.2e-115 418.3 417 57.6
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 2.7e-114 416.4 436 55.5
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 3.6e-114 416.0 362 60.8
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 1.0e-113 414.5 336 62.8
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 1.0e-113 414.5 417 54.0
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 1.4e-113 414.1 424 54.0
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 1.8e-113 413.7 419 55.1
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.8e-113 413.7 410 57.1
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 8.8e-113 411.4 374 58.6
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 8.8e-113 411.4 387 57.4
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 1.5e-112 410.6 371 58.8
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 4.8e-111 405.6 338 62.4
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.8e-111 405.6 338 62.4
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 8.2e-111 404.8 345 61.7
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 1.1e-110 404.4 336 64.0
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 1.4e-110 404.1 374 58.6
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.3e-110 402.1 338 62.1
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 5.3e-110 402.1 427 53.2
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 7.0e-110 401.7 425 53.4
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 2.6e-109 399.8 377 58.1
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 3.5e-109 399.4 337 62.0
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 4.5e-109 399.1 336 61.6
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 4.5e-109 399.1 419 53.5
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 1.0e-108 397.9 375 56.5
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 1.3e-108 397.5 374 56.4
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.5e-107 393.3 349 60.2
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 3.2e-107 392.9 337 59.6
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 1.2e-106 391.0 345 60.3
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 1.6e-106 390.6 504 48.2
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 2.1e-106 390.2 394 53.3
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.1e-106 388.7 334 61.4
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 8.0e-106 388.3 427 52.9
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 3.0e-105 386.3 364 57.1
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.0e-105 386.3 314 64.3
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 3.0e-105 386.3 340 59.1
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 4.0e-105 386.0 403 53.3
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 4.0e-105 386.0 337 59.3
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 5.2e-105 385.6 405 54.3
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 2.6e-104 383.3 375 54.9
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 3.4e-104 382.9 375 55.5
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 1.7e-103 380.6 336 60.7
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 4.8e-103 379.0 344 56.4
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 7.0e-102 375.2 336 56.8
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 1.6e-101 374.0 341 58.4
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 4.5e-101 372.5 328 59.1
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 1.7e-100 370.5 332 56.9
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 2.2e-100 370.2 372 54.0
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 8.5e-100 368.2 361 56.5
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 1.5e-99 367.5 327 57.5
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 1.5e-99 367.5 365 54.5
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 1.9e-99 367.1 365 55.1
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 1.9e-99 367.1 365 55.1
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 2.5e-99 366.7 360 54.4
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 2.7e-98 363.2 366 54.6
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 8.0e-98 361.7 388 52.6
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 1.4e-97 360.9 331 56.8
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 1.5e-96 357.5 388 49.5
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 1.7e-95 354.0 347 53.0
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 9.1e-94 348.2 430 49.1
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-93 346.3 426 49.8
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 1.3e-92 344.4 366 48.6
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 1.7e-92 344.0 332 53.0
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 3.8e-92 342.8 315 59.4
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 4.7e-90 335.9 286 60.5
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 4.0e-89 332.8 321 54.8
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 1.7e-87 327.4 280 60.7
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 3.2e-86 323.2 340 48.5
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 6.1e-82 308.9 394 44.9
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 5.2e-81 305.8 280 58.9
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 2.4e-78 297.0 351 47.9
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 3.9e-76 289.7 486 39.9
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.6e-74 284.3 369 46.3
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 6.8e-73 278.9 301 52.8
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 6.8e-73 278.9 293 52.6
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 7.5e-72 275.4 241 58.5
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 2.2e-71 273.9 340 47.4
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 5.6e-67 259.2 351 43.9
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 2.1e-66 257.3 217 58.1
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 3.4e-64 250.0 489 37.8
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 1.2e-61 241.5 209 57.4
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 7.8e-61 238.8 224 57.1
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 2.3e-60 237.3 238 54.6
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 5.1e-60 236.1 342 40.6
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 3.3e-59 233.4 239 57.3
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 1.1e-57 228.4 179 66.5
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 5.2e-57 226.1 328 39.3
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 5.8e-56 222.6 252 47.2
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 4.9e-55 219.5 220 54.1
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 2.3e-52 210.7 335 38.5
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 3.0e-52 210.3 214 54.2
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 3.6e-50 203.4 241 51.9
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.0e-48 197.6 339 36.6
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 4.9e-47 193.0 237 50.2
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 1.9e-43 181.0 233 47.6
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 1.5e-40 171.4 182 48.4
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 1.1e-38 165.2 154 56.5
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 1.4e-38 164.9 234 45.7
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 6.0e-37 159.5 359 33.1
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 3.0e-36 157.1 335 32.5
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 3.3e-35 153.7 131 61.1
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 4.8e-34 149.8 126 61.1
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-32 144.1 204 38.2
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 3.4e-32 143.7 338 29.6
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 5.8e-32 142.9 122 61.5
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 1.1e-30 138.7 137 52.6
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 7.1e-30 136.0 350 29.4
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.0e-28 132.1 336 30.4
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.7e-26 123.6 330 28.2
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 3.1e-25 120.6 100 60.0
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.1e-25 120.2 124 55.6
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 2.0e-24 117.9 99 56.6
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 5.9e-24 116.3 101 57.4
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.0e-23 115.5 397 26.7
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.1e-22 112.1 84 63.1
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 3.2e-22 110.5 117 55.6
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 1.2e-21 108.6 119 50.4
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.6e-21 108.2 110 54.5
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.9e-21 105.9 82 70.7
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 4.3e-19 100.1 135 42.2
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 6.9e-17 92.8 75 66.7
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 1.5e-16 91.7 65 64.6
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.5e-16 91.7 68 72.1
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 3.4e-16 90.5 62 66.1
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 7.7e-16 89.4 141 40.4
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 5.0e-15 86.7 70 57.1
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 1.4e-14 85.1 71 54.9
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 2.5e-14 84.3 152 40.1
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 1.5e-11 75.1 62 56.5
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 1.7e-10 71.6 110 40.9
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 3.7e-10 70.5 59 62.7
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.8e-10 70.1 53 60.4
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 2.4e-09 67.8 65 53.8
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 2.6e-08 64.3 336 23.5
unitig_62.g23077 Utricularia gibba HOM05D000943 ORTHO05D008314 1.7e-07 61.6 338 23.7
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 8.5e-07 59.3 52 53.8
RcHm_v2.0_Chr5g0029301 Rosa chinensis HOM05D000943 ORTHO05D008314 8.5e-07 59.3 420 24.8
GSVIVG01014085001 Vitis vinifera HOM05D000943 ORTHO05D008314 1.1e-06 58.9 326 24.2
Solyc12g005410.2 Solanum lycopersicum HOM05D000943 ORTHO05D008314 1.4e-06 58.5 315 22.9
arahy.Tifrunner.gnm1.ann1.BUF90N Arachis hypogaea HOM05D000943 ORTHO05D008314 4.2e-06 57.0 412 22.3
arahy.Tifrunner.gnm1.ann1.WT9QCD Arachis hypogaea HOM05D000943 ORTHO05D008314 4.2e-06 57.0 412 22.3
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 4.2e-06 57.0 35 77.1
DCAR_017587 Daucus carota HOM05D000943 ORTHO05D008314 5.5e-06 56.6 328 22.0
Peaxi162Scf00000g76016 Petunia axillaris HOM05D000943 ORTHO05D008314 5.5e-06 56.6 415 21.9
FAN11G0107 Fragaria x ananassa HOM05D000943 ORTHO05D008314 9.4e-06 55.8 327 24.2
FAN16G1964 Fragaria x ananassa HOM05D000943 ORTHO05D008314 9.4e-06 55.8 327 24.2
FAN21G2606 Fragaria x ananassa HOM05D000943 ORTHO05D008314 9.4e-06 55.8 327 24.2


User provided reference genes

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