Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 2.7e-74 282.0 147 100.0
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 4.8e-39 164.9 153 63.4
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 2.0e-32 142.9 156 55.8
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 2.4e-30 136.0 142 51.4
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 8.5e-28 127.5 150 54.0
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 3.2e-27 125.6 142 48.6
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 5.2e-25 118.2 146 47.9
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 6.8e-25 117.9 141 45.4
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 8.8e-25 117.5 153 48.4
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 1.2e-24 117.1 144 49.3
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 1.5e-24 116.7 145 49.0
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 3.4e-24 115.5 145 48.3
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 4.4e-24 115.2 148 47.3
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 7.5e-24 114.4 140 48.6
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 9.8e-24 114.0 145 46.2
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 9.8e-24 114.0 140 47.9
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.3e-23 113.6 143 46.2
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.7e-23 113.2 155 46.5
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 1.7e-23 113.2 135 49.6
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.2e-23 112.8 139 49.6
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 2.8e-23 112.5 148 48.0
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.8e-23 112.5 142 50.7
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 2.8e-23 112.5 119 55.5
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 2.8e-23 112.5 143 48.3
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 4.8e-23 111.7 143 46.2
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 4.8e-23 111.7 146 45.2
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 6.3e-23 111.3 146 46.6
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 6.3e-23 111.3 146 44.5
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 6.3e-23 111.3 150 46.0
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 6.3e-23 111.3 141 49.6
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 6.3e-23 111.3 150 45.3
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 3.1e-22 109.0 141 48.2
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 4.1e-22 108.6 142 47.9
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 5.4e-22 108.2 144 47.2
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 7.0e-22 107.8 144 43.8
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 9.1e-22 107.5 142 44.4
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 9.1e-22 107.5 140 45.0
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 9.1e-22 107.5 146 44.5
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 1.2e-21 107.1 134 45.5
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 2.0e-21 106.3 151 45.7
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 2.0e-21 106.3 145 44.8
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 2.7e-21 105.9 145 45.5
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 7.7e-21 104.4 143 44.1
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 7.7e-21 104.4 135 45.9
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 1.0e-20 104.0 147 45.6
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.3e-20 103.6 139 42.4
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 2.9e-20 102.4 136 47.1
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 2.9e-20 102.4 136 47.1
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.8e-20 102.1 135 45.2
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 3.8e-20 102.1 148 46.6
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 6.6e-20 101.3 135 45.2
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 6.6e-20 101.3 149 43.6
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 8.6e-20 100.9 141 44.0
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.1e-19 100.5 142 45.1
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 2.5e-19 99.4 145 41.4
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.2e-19 98.6 136 44.1
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 4.2e-19 98.6 152 42.1
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 5.5e-19 98.2 114 48.2
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.2e-19 97.8 139 42.4
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.2e-18 97.1 145 44.1
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 1.2e-18 97.1 146 41.1
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.8e-18 95.9 139 46.8
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.8e-18 95.9 139 46.8
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.7e-18 95.1 148 39.9
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 4.7e-18 95.1 144 41.7
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 6.1e-18 94.7 152 41.4
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 6.1e-18 94.7 150 41.3
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.0e-17 94.0 109 48.6
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.4e-17 93.6 130 47.7
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.8e-17 93.2 142 46.5
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.8e-17 93.2 107 46.7
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 3.0e-17 92.4 139 41.0
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 3.0e-17 92.4 136 46.3
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 4.0e-17 92.0 130 43.8
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 5.2e-17 91.7 114 45.6
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 5.2e-17 91.7 107 45.8
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.2e-17 91.7 148 43.2
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 6.8e-17 91.3 147 44.2
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 8.9e-17 90.9 136 42.6
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.5e-16 90.1 106 45.3
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 2.0e-16 89.7 143 40.6
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 2.0e-16 89.7 143 40.6
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.6e-16 89.4 135 41.5
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 3.4e-16 89.0 138 38.4
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 3.4e-16 89.0 147 44.2
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 3.4e-16 89.0 147 44.2
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.4e-16 88.6 142 44.4
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 4.4e-16 88.6 147 44.2
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 5.7e-16 88.2 143 44.1
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 7.5e-16 87.8 147 43.5
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 9.8e-16 87.4 106 50.0
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 9.8e-16 87.4 105 44.8
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 9.8e-16 87.4 128 43.8
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 9.8e-16 87.4 147 44.2
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 1.7e-15 86.7 149 38.9
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.7e-15 86.7 143 43.4
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-15 86.7 147 43.5
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-15 86.7 105 53.3
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-15 86.7 147 43.5
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 2.2e-15 86.3 132 41.7
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 2.2e-15 86.3 107 43.9
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 2.8e-15 85.9 147 43.5
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 3.7e-15 85.5 152 44.1
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 3.7e-15 85.5 125 42.4
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 4.9e-15 85.1 117 44.4
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 4.9e-15 85.1 125 43.2
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 4.9e-15 85.1 138 42.8
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 6.3e-15 84.7 152 42.1
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 8.3e-15 84.3 149 38.9
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 1.4e-14 83.6 107 46.7
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 1.8e-14 83.2 139 43.9
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 2.4e-14 82.8 134 38.1
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 2.4e-14 82.8 127 41.7
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 2.4e-14 82.8 106 40.6
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.1e-14 82.4 124 42.7
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 4.1e-14 82.0 147 41.5
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 4.1e-14 82.0 147 41.5
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.1e-14 82.0 124 44.4
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 4.1e-14 82.0 101 52.5
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 7.0e-14 81.3 141 40.4
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 7.0e-14 81.3 145 37.2
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.2e-13 80.5 138 42.0
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 1.2e-13 80.5 131 35.9
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 1.2e-13 80.5 136 39.0
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 1.6e-13 80.1 143 39.9
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.6e-13 80.1 141 43.3
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.0e-13 79.7 141 43.3
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 2.7e-13 79.3 136 41.2
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 3.5e-13 79.0 144 38.2
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 3.5e-13 79.0 141 39.0
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 3.5e-13 79.0 112 43.8
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 3.5e-13 79.0 132 39.4
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 4.5e-13 78.6 122 41.8
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.0e-12 77.4 133 44.4
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 1.3e-12 77.0 143 42.7
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 1.7e-12 76.6 98 43.9
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.3e-12 76.3 106 44.3
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.3e-12 76.3 99 42.4
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 2.9e-12 75.9 135 40.0
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 2.9e-12 75.9 114 40.4
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 3.8e-12 75.5 124 37.9
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 5.0e-12 75.1 147 38.1
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 6.6e-12 74.7 136 40.4
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 6.6e-12 74.7 133 39.1
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 8.6e-12 74.3 134 41.8
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 8.6e-12 74.3 155 39.4
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.1e-11 73.9 148 38.5
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 1.9e-11 73.2 88 46.6
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.9e-11 73.2 155 39.4
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 2.5e-11 72.8 147 37.4
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.5e-11 72.8 139 40.3
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 2.5e-11 72.8 142 38.0
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.6e-11 71.6 136 39.7
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.1e-10 69.7 144 33.3
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.1e-10 69.7 133 35.3
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 2.1e-10 69.7 141 37.6
ECA234G0512 Erigeron canadensis HOM05D023078 ORTHO05D003943 3.6e-10 68.9 153 41.8
ECA234G0883 Erigeron canadensis HOM05D023078 ORTHO05D003943 3.6e-10 68.9 153 41.8
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.7e-10 68.6 136 38.2
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 8.0e-10 67.8 128 38.3
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.0e-09 65.5 128 39.8
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 6.8e-09 64.7 140 35.7
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 1.2e-08 63.9 106 40.6
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.5e-08 63.5 85 44.7
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 2.6e-08 62.8 141 36.9
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 5.8e-08 61.6 109 36.7
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 9.8e-08 60.8 105 36.2
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 9.8e-08 60.8 105 36.2
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 9.8e-08 60.8 105 36.2
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 9.8e-08 60.8 105 36.2
PGSC0003DMG400026885 Solanum tuberosum HOM05D013183 ORTHO05D018130 9.8e-08 60.8 109 33.0
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.3e-07 60.5 141 30.5
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 2.2e-07 59.7 119 36.1
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.9e-07 59.3 121 33.1
Hma1.2p1_0078F.1_g040470 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.1e-06 57.4 135 36.3
ECA234G1138 Erigeron canadensis HOM05D023078 ORTHO05D003943 3.2e-06 55.8 146 38.4
Sed0009258 Sechium edule HOM05D035121 ORTHO05D009954 7.0e-06 54.7 134 32.8


User provided reference genes

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