Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 9.1e-130 466.8 225 100.0
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 6.6e-96 354.4 245 74.3
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 9.9e-76 287.3 184 76.1
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 5.1e-72 275.0 239 63.2
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 3.8e-51 205.7 220 57.7
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 2.3e-48 196.4 239 51.9
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 6.7e-48 194.9 229 52.8
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 2.5e-47 193.0 231 51.5
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 5.6e-47 191.8 232 54.3
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 5.6e-47 191.8 243 51.9
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.6e-46 190.3 238 51.7
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.6e-46 190.3 234 53.0
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 4.8e-46 188.7 223 53.8
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 8.1e-46 188.0 238 51.3
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 8.1e-46 188.0 238 51.3
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 1.4e-45 187.2 216 53.7
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 1.8e-45 186.8 266 46.6
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 4.0e-45 185.7 219 49.8
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 9.0e-45 184.5 234 51.7
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.2e-44 184.1 243 48.1
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 1.2e-44 184.1 250 50.0
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.5e-44 183.7 229 55.0
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 2.0e-44 183.3 264 48.5
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.6e-44 183.0 223 50.2
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 3.4e-44 182.6 226 53.5
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 4.5e-44 182.2 181 58.6
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 1.0e-43 181.0 246 47.2
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.3e-43 180.6 256 45.7
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.2e-43 179.9 235 51.1
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 2.9e-43 179.5 246 49.2
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 6.5e-43 178.3 240 50.4
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 6.5e-43 178.3 248 47.6
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.4e-42 177.2 256 47.3
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.5e-42 176.4 251 48.6
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 5.5e-42 175.3 254 48.4
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 7.1e-42 174.9 241 49.4
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 9.3e-42 174.5 239 49.4
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 9.3e-42 174.5 254 48.4
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 3.5e-41 172.6 227 49.8
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 3.5e-41 172.6 247 48.6
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 4.6e-41 172.2 217 50.7
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 6.0e-41 171.8 252 47.6
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 6.0e-41 171.8 196 54.6
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.3e-40 170.6 218 50.0
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.3e-40 170.6 218 52.8
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 2.3e-40 169.9 237 49.4
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 6.7e-40 168.3 261 46.4
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 8.7e-40 167.9 266 45.9
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.5e-39 167.2 266 45.9
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 7.4e-39 164.9 257 46.7
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.3e-38 164.1 266 45.1
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 1.3e-38 164.1 226 49.1
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 2.8e-38 162.9 247 47.4
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 2.8e-38 162.9 220 49.1
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 6.3e-38 161.8 245 46.5
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.8e-37 160.2 227 48.0
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 3.1e-37 159.5 219 49.8
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.3e-37 158.7 282 43.3
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.3e-37 158.7 282 43.3
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 6.9e-37 158.3 230 47.0
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 1.5e-36 157.1 215 49.8
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 1.5e-36 157.1 215 49.8
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 1.5e-36 157.1 215 49.8
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.6e-36 156.4 248 44.0
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 3.4e-36 156.0 210 47.6
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 3.4e-36 156.0 248 44.8
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.0e-35 154.5 244 43.9
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 1.3e-35 154.1 222 46.4
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 2.2e-35 153.3 215 49.3
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.2e-35 153.3 288 42.0
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 2.2e-35 153.3 224 44.2
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 3.8e-35 152.5 240 44.2
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 5.0e-35 152.1 243 43.6
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 6.5e-35 151.8 233 45.5
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 8.4e-35 151.4 227 43.6
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 1.1e-34 151.0 247 47.0
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.9e-34 150.2 210 47.1
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.9e-34 150.2 257 44.7
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 3.2e-34 149.4 215 47.4
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 5.5e-34 148.7 201 47.8
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 5.5e-34 148.7 234 44.4
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.2e-33 147.5 235 42.1
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.2e-33 147.5 204 47.5
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 2.1e-33 146.7 217 47.9
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 2.1e-33 146.7 218 46.3
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 4.6e-33 145.6 231 44.6
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 7.9e-33 144.8 199 48.7
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 3.9e-32 142.5 247 43.3
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 8.7e-32 141.4 207 45.9
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 7.4e-31 138.3 203 43.8
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 7.4e-31 138.3 240 43.3
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 9.7e-31 137.9 268 41.4
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 4.8e-30 135.6 206 47.1
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 6.3e-30 135.2 227 43.6
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 8.2e-30 134.8 234 41.9
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 2.4e-29 133.3 233 41.6
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.1e-29 132.9 282 39.7
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 5.9e-28 128.6 226 41.2
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 5.9e-28 128.6 253 37.9
ECA233G4816 Erigeron canadensis HOM05D004123 ORTHO05D004768 1.7e-27 127.1 125 56.0
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.9e-27 126.3 222 39.2
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 5.0e-27 125.6 258 39.5
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 6.5e-27 125.2 138 55.8
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 6.5e-27 125.2 162 49.4
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.5e-27 125.2 202 44.6
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 1.1e-26 124.4 220 39.5
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 9.4e-26 121.3 240 37.9
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 2.1e-25 120.2 157 49.0
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.7e-25 119.8 201 43.8
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 1.0e-24 117.9 229 37.1
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.5e-23 114.0 210 41.9
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 7.4e-23 111.7 210 41.9
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 1.3e-22 110.9 203 42.9
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 1.3e-22 110.9 206 42.7
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 1.3e-22 110.9 203 42.9
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 1.3e-22 110.9 227 36.6
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.3e-22 110.9 107 57.0
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.3e-22 110.9 107 57.0
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 8.2e-22 108.2 209 42.1
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 8.2e-22 108.2 211 42.2
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.4e-21 107.5 213 39.4
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 1.8e-21 107.1 231 39.4
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 5.3e-21 105.5 153 44.4
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.5e-20 104.0 142 51.4
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 1.5e-20 104.0 218 42.7
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 2.6e-20 103.2 74 77.0
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.0e-19 101.3 228 36.8
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 1.7e-19 100.5 212 41.5
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 1.7e-19 100.5 199 37.7
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 2.9e-19 99.8 148 46.6
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 1.9e-18 97.1 82 67.1
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 3.2e-18 96.3 220 38.2
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 3.2e-18 96.3 145 44.8
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 3.2e-18 96.3 221 36.2
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 5.5e-18 95.5 54 87.0
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 9.4e-18 94.7 163 43.6
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 2.1e-17 93.6 139 43.9
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 4.8e-14 82.4 146 38.4
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 8.2e-14 81.6 160 37.5
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 8.2e-14 81.6 182 36.8
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 3.1e-13 79.7 130 41.5
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 5.3e-13 79.0 233 32.6
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 2.0e-12 77.0 129 42.6
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 3.5e-12 76.3 227 34.4
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 4.5e-12 75.9 236 33.9
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 7.7e-12 75.1 204 33.8
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.0e-11 74.7 154 37.0
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.0e-11 74.7 47 72.3
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.0e-11 74.7 47 72.3
ECA246G5171 Erigeron canadensis HOM05D004123 ORTHO05D004768 1.7e-11 73.9 155 37.4
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.8e-11 72.8 106 41.5
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.5e-10 70.9 79 48.1
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 1.9e-10 70.5 134 38.8
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 3.2e-10 69.7 88 47.7
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.2e-10 69.7 108 38.0
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 7.2e-10 68.6 139 37.4
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 1.6e-09 67.4 174 37.4
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.7e-09 65.9 129 34.9
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 1.0e-08 64.7 262 30.5
EL10Ac7g17799 Beta vulgaris HOM05D000333 ORTHO05D000190 4.0e-08 62.8 144 34.7
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 6.7e-08 62.0 209 32.1
CsaV3_3G012400 Cucumis sativus L. HOM05D000523 ORTHO05D001559 2.6e-07 60.1 129 33.3
PSO832G4141 Papaver somniferum HOM05D001250 ORTHO05D000627 1.3e-06 57.8 91 38.5
GSVIVG01028555001 Vitis vinifera HOM05D000333 ORTHO05D000190 1.7e-06 57.4 124 33.1
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 2.2e-06 57.0 57 52.6
SEGI_26835 Sequoiadendron giganteum HOM05D004123 ORTHO05D004768 3.7e-06 56.2 51 52.9
PSO591G0228 Papaver somniferum HOM05D001250 ORTHO05D000627 4.8e-06 55.8 91 37.4
Potri.014G178200 Populus trichocarpa HOM05D000333 ORTHO05D000190 4.8e-06 55.8 115 33.0
BolC9t53427H Brassica oleracea HOM05D000333 ORTHO05D000190 8.2e-06 55.1 77 45.5


User provided reference genes

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