Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 3.5e-129 464.9 225 100.0
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 1.0e-112 410.2 225 87.1
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 3.8e-112 408.3 225 88.0
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 1.3e-107 393.3 225 85.3
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 1.7e-99 366.3 225 77.3
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.2e-97 360.1 225 75.6
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.2e-97 360.1 225 75.6
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 1.2e-97 360.1 225 75.1
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.6e-97 358.2 225 74.7
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 5.9e-97 357.8 225 74.2
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.3e-96 356.7 223 75.3
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 1.7e-96 356.3 225 75.6
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.3e-96 355.9 225 74.7
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 2.3e-96 355.9 225 76.0
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 2.3e-96 355.9 225 73.3
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 2.9e-96 355.5 225 73.3
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.9e-96 355.1 225 74.2
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 3.9e-96 355.1 224 76.3
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.9e-95 352.8 225 73.3
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 2.5e-95 352.4 225 73.8
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 7.3e-95 350.9 225 73.8
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 7.3e-95 350.9 225 73.8
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 7.3e-95 350.9 225 73.8
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 7.3e-95 350.9 225 72.0
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 1.2e-94 350.1 225 73.3
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 1.6e-94 349.7 225 73.8
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 2.1e-94 349.4 225 73.8
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 2.1e-94 349.4 225 72.9
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 2.8e-94 349.0 225 74.7
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.8e-94 349.0 226 74.3
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.8e-94 349.0 226 74.3
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 2.8e-94 349.0 225 73.3
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 3.6e-94 348.6 225 73.8
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 6.2e-94 347.8 225 72.0
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 8.0e-94 347.4 225 73.8
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 1.0e-93 347.1 225 73.3
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 1.0e-93 347.1 225 72.4
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 2.3e-93 345.9 225 72.9
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 72.4
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.0e-93 345.1 225 73.3
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 8.9e-93 344.0 225 72.4
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 8.9e-93 344.0 227 72.7
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 1.2e-92 343.6 224 71.9
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 1.2e-92 343.6 225 72.0
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.5e-92 343.2 225 74.7
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 2.6e-92 342.4 225 71.6
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 4.4e-92 341.7 225 73.3
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 4.4e-92 341.7 225 72.4
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 7.5e-92 340.9 225 71.6
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 7.5e-92 340.9 225 74.7
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.3e-91 340.1 225 72.4
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 1.3e-91 340.1 225 71.1
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 1.7e-91 339.7 226 70.4
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.7e-91 339.7 225 74.2
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 2.9e-91 339.0 225 73.3
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 3.7e-91 338.6 225 71.1
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.9e-91 338.2 225 72.0
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 8.3e-91 337.4 225 72.0
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 2.4e-90 335.9 226 70.4
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 1.2e-89 333.6 225 69.8
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.6e-89 333.2 225 70.2
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 2.0e-89 332.8 225 70.2
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 2.0e-89 332.8 226 71.2
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 1.0e-88 330.5 225 69.3
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 1.0e-88 330.5 225 68.9
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 1.7e-88 329.7 227 69.6
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 2.3e-88 329.3 225 68.9
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 3.0e-88 328.9 225 68.9
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 3.0e-88 328.9 225 68.9
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 6.6e-88 327.8 225 68.4
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 6.6e-88 327.8 225 69.3
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 1.9e-87 326.2 225 68.0
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 1.9e-87 326.2 279 58.8
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 3.3e-87 325.5 225 67.6
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 4.3e-87 325.1 225 69.8
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 1.2e-86 323.6 260 63.1
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.6e-86 323.2 266 62.0
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 2.1e-86 322.8 197 77.2
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 4.7e-86 321.6 228 68.4
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 6.2e-86 321.2 197 78.2
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 1.8e-85 319.7 225 68.0
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 8.9e-85 317.4 225 66.7
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 2.6e-84 315.8 225 65.3
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 7.5e-84 314.3 225 65.8
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 9.8e-84 313.9 208 71.6
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 2.9e-83 312.4 225 65.3
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 1.4e-82 310.1 225 64.4
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 2.4e-82 309.3 225 65.3
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 2.1e-81 306.2 225 64.0
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 4.6e-81 305.1 225 64.4
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 2.3e-80 302.8 225 64.4
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 2.3e-80 302.8 232 62.9
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 2.3e-80 302.8 225 64.9
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 3.9e-80 302.0 226 64.2
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 8.6e-80 300.8 228 64.5
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 1.5e-79 300.1 225 63.6
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 1.6e-78 296.6 225 64.9
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 2.8e-78 295.8 225 63.1
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 4.7e-78 295.0 225 62.7
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 8.1e-78 294.3 218 64.2
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 2.3e-77 292.7 227 62.1
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 2.3e-77 292.7 227 61.7
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 8.9e-77 290.8 225 64.4
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 9.9e-76 287.3 225 64.4
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 4.9e-75 285.0 225 62.2
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 5.4e-74 281.6 229 59.8
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 1.3e-72 276.9 177 73.4
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 5.6e-71 271.6 227 58.6
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 7.3e-71 271.2 230 57.8
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 3.4e-68 262.3 226 58.8
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 8.4e-67 257.7 225 60.0
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 5.4e-66 255.0 210 58.6
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 2.7e-65 252.7 243 53.5
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 3.5e-65 252.3 225 58.7
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 3.5e-65 252.3 252 55.6
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 3.5e-65 252.3 252 55.6
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.1e-63 247.3 174 67.8
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 5.6e-63 245.0 229 57.6
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 1.2e-60 237.3 250 56.0
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 4.4e-60 235.3 225 50.7
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.3e-54 217.2 225 48.0
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 4.5e-52 208.8 162 63.0
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 1.9e-50 203.4 225 47.1
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 7.1e-50 201.4 201 49.8
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.8e-46 188.7 122 70.5
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 2.0e-44 183.3 205 44.9
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 4.5e-44 182.2 231 42.4
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 5.5e-42 175.3 228 42.5
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 1.4e-37 160.6 130 60.8
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 9.0e-37 157.9 100 71.0
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.5e-36 157.1 100 71.0
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 3.0e-32 142.9 195 44.1
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.1e-31 141.0 150 49.3
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 6.7e-24 115.2 72 68.1
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 1.1e-18 97.8 66 63.6
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.7e-17 93.2 105 48.6
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.7e-17 93.2 51 80.4
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.7e-17 92.4 51 78.4
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.7e-17 92.4 51 78.4
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 7.9e-17 91.7 79 58.2
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.0e-16 91.3 51 78.4
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 3.3e-15 86.3 56 66.1
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 1.3e-14 84.3 71 64.8
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 8.2e-14 81.6 122 41.8
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 5.9e-12 75.5 51 66.7
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.7e-11 73.9 51 70.6
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.1e-10 71.2 51 64.7
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 4.2e-10 69.3 225 28.4
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 5.2e-08 62.4 37 75.7
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 1.1e-07 61.2 56 55.4


User provided reference genes

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