Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0212761 Helianthus annuus HOM05D000068 ORTHO05D013931 3.8e-48 194.5 97 100.0
HanXRQChr08g0217981 Helianthus annuus HOM05D000263 ORTHO05D013931 3.0e-45 184.9 96 95.8
HanXRQChr09g0275471 Helianthus annuus HOM05D000068 ORTHO05D013931 2.0e-17 92.4 63 73.0
HanXRQChr10g0285761 Helianthus annuus HOM05D000068 ORTHO05D000084 5.5e-15 84.3 134 42.5
HanXRQChr09g0275461 Helianthus annuus HOM05D000068 ORTHO05D013931 6.0e-14 80.9 66 60.6
HanXRQChr10g0285741 Helianthus annuus HOM05D000068 ORTHO05D000084 2.9e-08 62.0 58 51.7
ECA247G1604 Erigeron canadensis HOM05D000068 ORTHO05D000084 3.8e-08 61.6 130 35.4
HanXRQChr10g0285641 Helianthus annuus HOM05D000068 ORTHO05D000084 3.8e-08 61.6 61 52.5
Potri.002G187500 Populus trichocarpa HOM05D000068 ORTHO05D000084 3.8e-08 61.6 62 50.0
SalBow6G3149 Salvia bowleyana HOM05D000068 ORTHO05D000084 5.0e-08 61.2 44 63.6
Lsat_1_v5_gn_9_6621 Lactuca sativa HOM05D000068 ORTHO05D000084 8.5e-08 60.5 62 46.8
PSO761G0709 Papaver somniferum HOM05D000068 ORTHO05D000084 8.5e-08 60.5 62 46.8
HanXRQChr15g0464451 Helianthus annuus HOM05D000068 ORTHO05D000084 1.1e-07 60.1 61 49.2
QL12p034888 Quercus lobata HOM05D000068 ORTHO05D000084 1.1e-07 60.1 73 39.7
Sabra14G0083300 Salix brachista HOM05D000068 ORTHO05D000084 1.1e-07 60.1 55 52.7
HPP92_001180 Vanilla planifolia HOM05D000068 ORTHO05D000084 1.1e-07 60.1 62 46.8
HanXRQChr15g0464421 Helianthus annuus HOM05D000068 ORTHO05D000084 1.4e-07 59.7 62 46.8
HanXRQChr15g0464431 Helianthus annuus HOM05D000068 ORTHO05D000084 1.4e-07 59.7 62 46.8
COL.COLO4_23136 Corchorus olitorius HOM05D000068 ORTHO05D000084 1.9e-07 59.3 62 48.4
Lalb_Chr18g0046411 Lupinus albus HOM05D000068 ORTHO05D000084 1.9e-07 59.3 55 52.7
MBI18_g10379_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D000084 1.9e-07 59.3 62 45.2
Manes.13G066700 Manihot esculenta HOM05D000068 ORTHO05D000084 1.9e-07 59.3 73 39.7
Potri.014G113500 Populus trichocarpa HOM05D000068 ORTHO05D000084 1.9e-07 59.3 70 44.3
Sed0026844 Sechium edule HOM05D000068 ORTHO05D000084 1.9e-07 59.3 51 54.9
ECA233G4008 Erigeron canadensis HOM05D000068 ORTHO05D000084 2.5e-07 58.9 62 45.2
Potri.014G113200 Populus trichocarpa HOM05D000068 ORTHO05D000084 2.5e-07 58.9 55 50.9
TAR633G2059 Trochodendron aralioides HOM05D000068 ORTHO05D000084 2.5e-07 58.9 62 46.8
COL.COLO4_28443 Corchorus olitorius HOM05D000068 ORTHO05D000084 3.2e-07 58.5 62 45.2
Gohir.A12G120200 Gossypium hirsutum HOM05D000068 ORTHO05D000084 3.2e-07 58.5 55 50.9
Gohir.D12G123800 Gossypium hirsutum HOM05D000068 ORTHO05D000084 3.2e-07 58.5 55 50.9
Gorai.008G134900 Gossypium raimondii HOM05D000068 ORTHO05D000084 3.2e-07 58.5 55 50.9
Sabra14G0083500 Salix brachista HOM05D000068 ORTHO05D000084 3.2e-07 58.5 55 50.9
Sabra14G0083600 Salix brachista HOM05D000068 ORTHO05D000084 3.2e-07 58.5 55 50.9
HanXRQChr15g0464441 Helianthus annuus HOM05D000068 ORTHO05D000084 4.2e-07 58.2 54 51.9
Manes.05G009300 Manihot esculenta HOM05D000068 ORTHO05D000084 4.2e-07 58.2 62 46.8
PSO210G7558 Papaver somniferum HOM05D000068 ORTHO05D000084 4.2e-07 58.2 62 45.2
Sed0018438 Sechium edule HOM05D000068 ORTHO05D000084 4.2e-07 58.2 51 54.9
Glyma.02G008000 Glycine max HOM05D000068 ORTHO05D000084 5.5e-07 57.8 62 43.5
Glyma.03G224100 Glycine max HOM05D000068 ORTHO05D000084 5.5e-07 57.8 55 50.9
HanXRQChr10g0285621 Helianthus annuus HOM05D000068 ORTHO05D000084 5.5e-07 57.8 58 51.7
Lalb_Chr02g0147121 Lupinus albus HOM05D000068 ORTHO05D000084 5.5e-07 57.8 62 45.2
Lalb_Chr06g0167131 Lupinus albus HOM05D000068 ORTHO05D000084 5.5e-07 57.8 62 45.2
Potri.014G113100 Populus trichocarpa HOM05D000068 ORTHO05D000084 5.5e-07 57.8 62 46.8
Eucgr.K00573 Eucalyptus grandis HOM05D000068 ORTHO05D000084 7.2e-07 57.4 62 43.5
Gohir.A08G121500 Gossypium hirsutum HOM05D000068 ORTHO05D000084 7.2e-07 57.4 62 45.2
Gohir.D08G142900 Gossypium hirsutum HOM05D000068 ORTHO05D000084 7.2e-07 57.4 62 45.2
Gorai.004G147200 Gossypium raimondii HOM05D000068 ORTHO05D000084 7.2e-07 57.4 62 45.2
HanXRQChr10g0286101 Helianthus annuus HOM05D000068 ORTHO05D011954 7.2e-07 57.4 50 52.0
Hma1.2p1_0013F.1_g007840 Hydrangea macrophylla HOM05D000068 ORTHO05D000084 7.2e-07 57.4 44 56.8
Sabra02G0129900 Salix brachista HOM05D000068 ORTHO05D000084 7.2e-07 57.4 55 50.9
Thecc.01G324500 Theobroma cacao HOM05D000068 ORTHO05D000084 7.2e-07 57.4 62 43.5
TPR.G3070 Trifolium pratense HOM05D000068 ORTHO05D000084 7.2e-07 57.4 62 43.5
MSTRG.21727 Avicennia marina HOM05D000068 ORTHO05D000084 9.3e-07 57.0 44 61.4
CSS0006127 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 9.3e-07 57.0 62 45.2
ECA247G3422 Erigeron canadensis HOM05D000068 ORTHO05D000084 9.3e-07 57.0 62 41.9
Glyma.10G137600 Glycine max HOM05D000068 ORTHO05D000084 9.3e-07 57.0 62 43.5
Lj5g0001125 Lotus japonicus HOM05D000068 ORTHO05D000084 9.3e-07 57.0 62 43.5
Medtr1g086080 Medicago truncatula HOM05D000068 ORTHO05D000084 9.3e-07 57.0 62 43.5
Nitab4.5_0003324g0090 Nicotiana tabacum HOM05D000068 ORTHO05D000084 9.3e-07 57.0 44 61.4
Psat6g159040 Pisum sativum HOM05D000068 ORTHO05D000084 9.3e-07 57.0 62 43.5
QL12p034871 Quercus lobata HOM05D000068 ORTHO05D000084 9.3e-07 57.0 46 52.2
THA.LOC104802118 Tarenaya hassleriana HOM05D000068 ORTHO05D000084 9.3e-07 57.0 62 41.9
Atru.chr5.871 Acer truncatum HOM05D000068 ORTHO05D000084 1.2e-06 56.6 62 45.2
MSTRG.18062 Avicennia marina HOM05D000068 ORTHO05D000084 1.2e-06 56.6 44 56.8
CAN.G1280.46 Capsicum annuum HOM05D000068 ORTHO05D000084 1.2e-06 56.6 51 51.0
CiPaw.08G083100 Carya illinoinensis HOM05D000068 ORTHO05D000084 1.2e-06 56.6 53 47.2
ClCG11G010820 Citrullus lanatus HOM05D000068 ORTHO05D000084 1.2e-06 56.6 44 59.1
CsaV3_2G009630 Cucumis sativus L. HOM05D000068 ORTHO05D000084 1.2e-06 56.6 44 59.1
Eucgr.A01005 Eucalyptus grandis HOM05D000068 ORTHO05D000084 1.2e-06 56.6 44 56.8
FvH4_1g26280 Fragaria vesca HOM05D000068 ORTHO05D000084 1.2e-06 56.6 62 45.2
FAN19G1017 Fragaria x ananassa HOM05D000068 ORTHO05D000084 1.2e-06 56.6 62 45.2
FAN26G1897 Fragaria x ananassa HOM05D000068 ORTHO05D000084 1.2e-06 56.6 62 45.2
FAN28G2218 Fragaria x ananassa HOM05D000068 ORTHO05D000084 1.2e-06 56.6 62 45.2
Lalb_Chr02g0147131 Lupinus albus HOM05D000068 ORTHO05D000084 1.2e-06 56.6 62 43.5
Manes.05G009400 Manihot esculenta HOM05D000068 ORTHO05D000084 1.2e-06 56.6 62 43.5
Peaxi162Scf00058g01716 Petunia axillaris HOM05D000068 ORTHO05D000084 1.2e-06 56.6 44 59.1
RcHm_v2.0_Chr3g0485931 Rosa chinensis HOM05D000068 ORTHO05D000084 1.2e-06 56.6 62 45.2
RcHm_v2.0_Chr3g0485961 Rosa chinensis HOM05D000068 ORTHO05D000084 1.2e-06 56.6 62 45.2
SGA_v2.0_scaffold3G01475 Striga asiatica HOM05D000068 ORTHO05D000084 1.2e-06 56.6 44 54.5
TWI23G0292 Tripterygium wilfordii HOM05D000068 ORTHO05D000084 1.2e-06 56.6 55 49.1
HPP92_011656 Vanilla planifolia HOM05D000068 ORTHO05D000084 1.2e-06 56.6 70 40.0
HPP92_011725 Vanilla planifolia HOM05D000068 ORTHO05D000084 1.2e-06 56.6 70 40.0
GSVIVG01028256001 Vitis vinifera HOM05D000068 ORTHO05D000084 1.2e-06 56.6 55 49.1
MBI04_g27245_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D000084 1.6e-06 56.2 62 43.5
Phvul.007G209600 Phaseolus vulgaris HOM05D000068 ORTHO05D000084 1.6e-06 56.2 62 43.5
Rhsim12G0141000 Rhododendron simsii HOM05D000068 ORTHO05D000084 1.6e-06 56.2 57 47.4
RcHm_v2.0_Chr4g0427711 Rosa chinensis HOM05D000068 ORTHO05D000084 1.6e-06 56.2 55 47.3
THA.LOC104801328 Tarenaya hassleriana HOM05D000068 ORTHO05D000084 1.6e-06 56.2 62 43.5
VMungo0720G0996 Vigna mungo HOM05D000068 ORTHO05D000084 1.6e-06 56.2 62 43.5
arahy.Tifrunner.gnm1.ann1.2T5J5A Arachis hypogaea HOM05D000068 ORTHO05D000084 2.1e-06 55.8 62 43.5
arahy.Tifrunner.gnm1.ann1.UWQ5XH Arachis hypogaea HOM05D000068 ORTHO05D000084 2.1e-06 55.8 62 43.5
CSS0042435 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 2.1e-06 55.8 62 45.2
CiPaw.01G128300 Carya illinoinensis HOM05D000068 ORTHO05D000084 2.1e-06 55.8 53 47.2
Haze_05141 Corylus avellana HOM05D000068 ORTHO05D000084 2.1e-06 55.8 62 40.3
CsaV3_2G009640 Cucumis sativus L. HOM05D000068 ORTHO05D000084 2.1e-06 55.8 37 67.6
HanXRQChr05g0139231 Helianthus annuus HOM05D000068 ORTHO05D000084 2.1e-06 55.8 62 41.9
Lj2A1215G58 Lonicera japonica HOM05D000068 ORTHO05D000084 2.1e-06 55.8 62 45.2
Lj2A1216T53 Lonicera japonica HOM05D000068 ORTHO05D000084 2.1e-06 55.8 62 45.2
Lj3g0000443 Lotus japonicus HOM05D000068 ORTHO05D000084 2.1e-06 55.8 55 49.1
Nitab4.5_0000363g0120 Nicotiana tabacum HOM05D000068 ORTHO05D000084 2.1e-06 55.8 44 59.1
PSO761G0088 Papaver somniferum HOM05D000068 ORTHO05D000084 2.1e-06 55.8 62 40.3
Phvul.001G218000 Phaseolus vulgaris HOM05D000068 ORTHO05D000084 2.1e-06 55.8 55 47.3
GSVIVG01017696001 Vitis vinifera HOM05D000068 ORTHO05D000084 2.1e-06 55.8 62 41.9
CSS0016197 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 2.7e-06 55.5 62 43.5
Cpa.g.sc57.7 Carica papaya HOM05D000068 ORTHO05D000084 2.7e-06 55.5 62 41.9
CiPaw.07G125300 Carya illinoinensis HOM05D000068 ORTHO05D000084 2.7e-06 55.5 37 64.9
Ca_10242_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 2.7e-06 55.5 62 43.5
DCAR_002935 Daucus carota HOM05D000068 ORTHO05D000084 2.7e-06 55.5 62 45.2
Duzib133G0344 Durio zibethinus HOM05D000068 ORTHO05D000084 2.7e-06 55.5 62 41.9
Duzib138G0735 Durio zibethinus HOM05D000068 ORTHO05D000084 2.7e-06 55.5 62 41.9
Lj1g0014456 Lotus japonicus HOM05D000068 ORTHO05D000084 2.7e-06 55.5 55 50.9
Medtr4g077930 Medicago truncatula HOM05D000068 ORTHO05D000084 2.7e-06 55.5 44 50.0
Phvul.003G122600 Phaseolus vulgaris HOM05D000068 ORTHO05D000084 2.7e-06 55.5 37 62.2
Sabra14G0083200 Salix brachista HOM05D000068 ORTHO05D000084 2.7e-06 55.5 62 41.9
Cfa004505 Carpinus fangiana HOM05D000068 ORTHO05D000084 3.6e-06 55.1 55 43.6
Ciclev10006637m.g Citrus clementina HOM05D000068 ORTHO05D000084 3.6e-06 55.1 62 41.9
Eucgr.A01007 Eucalyptus grandis HOM05D000068 ORTHO05D000084 3.6e-06 55.1 40 62.5
Lj4g0010884 Lotus japonicus HOM05D000068 ORTHO05D000084 3.6e-06 55.1 55 45.5
Manes.01G234400 Manihot esculenta HOM05D000068 ORTHO05D000084 3.6e-06 55.1 62 41.9
PGR042G2552 Punica granatum HOM05D000068 ORTHO05D000084 3.6e-06 55.1 51 45.1
QL12p034751 Quercus lobata HOM05D000068 ORTHO05D000084 3.6e-06 55.1 62 43.5
SalBow2G3157 Salvia bowleyana HOM05D000068 ORTHO05D000084 3.6e-06 55.1 62 45.2
vmacro09054 Vaccinium macrocarpon HOM05D000068 ORTHO05D000084 3.6e-06 55.1 62 41.9
VMungo1215G1571 Vigna mungo HOM05D000068 ORTHO05D000084 3.6e-06 55.1 37 62.2
Ciclev10006990m.g Citrus clementina HOM05D000068 ORTHO05D000084 4.6e-06 54.7 93 35.5
Haze_00758 Corylus avellana HOM05D000068 ORTHO05D000084 4.6e-06 54.7 55 47.3
Lalb_Chr21g0309831 Lupinus albus HOM05D000068 ORTHO05D000084 4.6e-06 54.7 62 41.9
Nn4g25361 Nelumbo nucifera HOM05D000068 ORTHO05D000084 4.6e-06 54.7 62 41.9
PGR142G4159 Punica granatum HOM05D000068 ORTHO05D000084 4.6e-06 54.7 44 54.5
Sed0010629 Sechium edule HOM05D000068 ORTHO05D000084 4.6e-06 54.7 44 56.8
Solyc06g009280.1 Solanum lycopersicum HOM05D000068 ORTHO05D000084 4.6e-06 54.7 62 45.2
Sopen06g004020 Solanum pennellii HOM05D000068 ORTHO05D000084 4.6e-06 54.7 62 45.2
PGSC0003DMG400007294 Solanum tuberosum HOM05D000068 ORTHO05D000084 4.6e-06 54.7 62 45.2
SGA_v2.0_scaffold80G25676 Striga asiatica HOM05D000068 ORTHO05D000084 4.6e-06 54.7 62 38.7
THA.LOC104817432 Tarenaya hassleriana HOM05D000068 ORTHO05D000084 4.6e-06 54.7 62 40.3
arahy.Tifrunner.gnm1.ann1.L9FQE2 Arachis hypogaea HOM05D000068 ORTHO05D000084 6.1e-06 54.3 62 38.7
arahy.Tifrunner.gnm1.ann1.M63M99 Arachis hypogaea HOM05D000068 ORTHO05D000084 6.1e-06 54.3 62 38.7
Cfa004900 Carpinus fangiana HOM05D000068 ORTHO05D000084 6.1e-06 54.3 62 38.7
Cfa004902 Carpinus fangiana HOM05D000068 ORTHO05D000084 6.1e-06 54.3 62 38.7
Eucgr.K00568 Eucalyptus grandis HOM05D000068 ORTHO05D000084 6.1e-06 54.3 51 47.1
Gohir.A11G104300 Gossypium hirsutum HOM05D000068 ORTHO05D000084 6.1e-06 54.3 62 40.3
Gohir.D11G109100 Gossypium hirsutum HOM05D000068 ORTHO05D000084 6.1e-06 54.3 62 40.3
Gorai.007G116700 Gossypium raimondii HOM05D000068 ORTHO05D000084 6.1e-06 54.3 62 40.3
Nn4g25356 Nelumbo nucifera HOM05D000068 ORTHO05D000084 6.1e-06 54.3 55 43.6
PSO478G0315 Papaver somniferum HOM05D000068 ORTHO05D000084 6.1e-06 54.3 55 38.2
PSO541G4620 Papaver somniferum HOM05D000068 ORTHO05D000084 6.1e-06 54.3 44 54.5
RcHm_v2.0_Chr3g0448061 Rosa chinensis HOM05D000068 ORTHO05D000084 6.1e-06 54.3 109 33.0
TAR362G1122 Trochodendron aralioides HOM05D000068 ORTHO05D000084 6.1e-06 54.3 43 53.5
vmacro09052 Vaccinium macrocarpon HOM05D000068 ORTHO05D000084 6.1e-06 54.3 62 40.3
vmacro09056 Vaccinium macrocarpon HOM05D000068 ORTHO05D000084 6.1e-06 54.3 73 37.0
DCAR_005719 Daucus carota HOM05D000068 ORTHO05D000084 7.9e-06 53.9 62 41.9
Migut.D00631 Erythranthe guttata HOM05D000068 ORTHO05D000084 7.9e-06 53.9 37 59.5
Eucgr.A01006 Eucalyptus grandis HOM05D000068 ORTHO05D000084 7.9e-06 53.9 40 60.0
FAN17G2306 Fragaria x ananassa HOM05D000068 ORTHO05D000084 7.9e-06 53.9 55 45.5
Gohir.D12G124000 Gossypium hirsutum HOM05D000068 ORTHO05D000084 7.9e-06 53.9 55 45.5
Gorai.008G135100 Gossypium raimondii HOM05D000068 ORTHO05D000084 7.9e-06 53.9 55 45.5
Hma1.2p1_0484F.1_g162940 Hydrangea macrophylla HOM05D000068 ORTHO05D000084 7.9e-06 53.9 55 45.5
Hma1.2p1_0935F.1_g238650 Hydrangea macrophylla HOM05D000068 ORTHO05D000084 7.9e-06 53.9 55 45.5
Oeu040946.1 Olea europaea HOM05D000068 ORTHO05D000084 7.9e-06 53.9 55 43.6
QL12p034711 Quercus lobata HOM05D000068 ORTHO05D000084 7.9e-06 53.9 62 41.9


User provided reference genes

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