Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0152451 Helianthus annuus HOM05D007371 ORTHO05D009319 3.8e-41 171.0 83 100.0
HanXRQChr08g0211951 Helianthus annuus HOM05D007371 ORTHO05D009319 3.8e-41 171.0 83 100.0
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 2.2e-36 155.2 74 100.0
HanXRQChr00c0336g0573671 Helianthus annuus HOM05D007371 ORTHO05D009319 2.2e-36 155.2 74 100.0
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 2.2e-36 155.2 74 100.0
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 2.2e-36 155.2 74 100.0
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 2.2e-36 155.2 74 100.0
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 2.2e-36 155.2 74 100.0
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 2.2e-36 155.2 74 100.0
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 2.2e-36 155.2 74 100.0
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 2.2e-36 155.2 74 100.0
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 2.6e-34 148.3 74 91.9
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.0e-33 146.4 83 81.9
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 8.5e-33 143.3 82 82.9
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 1.4e-32 142.5 74 85.1
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 3.2e-32 141.4 74 85.1
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 9.4e-32 139.8 74 85.1
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 9.4e-32 139.8 74 85.1
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 9.4e-32 139.8 74 85.1
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 2.1e-31 138.7 74 86.5
Nn031s41614 Nelumbo nucifera HOM05D007371 ORTHO05D009319 3.6e-31 137.9 74 85.1
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 3.6e-31 137.9 74 85.1
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 3.6e-31 137.9 74 86.5
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.4e-30 136.0 81 77.8
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 2.3e-30 135.2 74 85.1
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 2.3e-30 135.2 74 85.1
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 2.3e-30 135.2 74 85.1
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 3.0e-30 134.8 74 83.8
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 5.1e-30 134.0 74 81.1
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 5.1e-30 134.0 74 82.4
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 5.1e-30 134.0 74 82.4
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 5.1e-30 134.0 74 82.4
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 8.8e-30 133.3 74 81.1
Thecc.08G131100 Theobroma cacao HOM05D007371 ORTHO05D009319 1.1e-29 132.9 74 82.4
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 1.5e-29 132.5 74 82.4
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 2.0e-29 132.1 74 82.4
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 2.0e-29 132.1 74 82.4
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 2.0e-29 132.1 74 82.4
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 5.7e-29 130.6 74 81.1
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 5.7e-29 130.6 74 81.1
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 5.7e-29 130.6 74 81.1
Gohir.D06G133700 Gossypium hirsutum HOM05D007371 ORTHO05D009319 7.4e-29 130.2 73 82.2
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.3e-28 129.4 74 79.7
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 2.8e-28 128.3 74 79.7
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 4.8e-28 127.5 74 78.4
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 4.8e-28 127.5 74 78.4
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 4.8e-28 127.5 74 78.4
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 4.8e-28 127.5 74 78.4
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 4.8e-28 127.5 74 78.4
BolSC35t60705H Brassica oleracea HOM05D007371 ORTHO05D009319 4.8e-28 127.5 74 78.4
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 4.8e-28 127.5 74 78.4
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 4.8e-28 127.5 74 78.4
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 4.8e-28 127.5 74 78.4
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 4.8e-28 127.5 74 78.4
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 4.8e-28 127.5 74 78.4
BraSC25t45911Z Brassica rapa HOM05D007371 ORTHO05D009319 4.8e-28 127.5 74 78.4
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 4.8e-28 127.5 74 78.4
C09p40330 Brassica napus HOM05D007371 ORTHO05D009319 1.4e-27 125.9 76 76.3
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.4e-27 125.2 74 77.0
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 3.1e-27 124.8 74 75.7
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 4.1e-27 124.4 74 74.3
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 5.3e-27 124.0 74 75.7
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 7.0e-27 123.6 74 77.0
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 9.1e-27 123.2 74 75.7
Gohir.A03G146201 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.2e-26 122.9 74 75.7
BraSC58t46462Z Brassica rapa HOM05D007371 ORTHO05D009319 2.6e-26 121.7 74 75.7
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 5.9e-26 120.6 74 77.0
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 1.0e-25 119.8 74 70.3
arahy.Tifrunner.gnm1.ann1.UDKX9E Arachis hypogaea HOM05D000890 ORTHO05D000697 2.2e-25 118.6 80 70.0
Gorai.005G189900 Gossypium raimondii HOM05D007371 ORTHO05D009319 1.9e-24 115.5 74 73.0
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 2.5e-24 115.2 70 77.1
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 3.2e-24 114.8 74 73.0
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 2.0e-21 105.5 63 74.6
Gohir.D02G169550 Gossypium hirsutum HOM05D007371 ORTHO05D009319 6.3e-20 100.5 74 64.9
Gohir.D07G194033 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.3e-17 92.8 51 84.3
Gorai.013G109900 Gossypium raimondii HOM05D007371 ORTHO05D009319 1.7e-17 92.4 56 75.0
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 2.3e-14 82.0 51 78.4
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.3e-14 82.0 51 78.4
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.3e-14 82.0 51 78.4
C02p24280 Brassica napus HOM05D007371 ORTHO05D009319 8.8e-14 80.1 65 55.4
RcHm_v2.0_Chr4g0438011 Rosa chinensis HOM05D007371 ORTHO05D009319 6.3e-12 73.9 35 94.3
BraSC143t45659Z Brassica rapa HOM05D007371 ORTHO05D009319 3.1e-11 71.6 46 71.7
Nitab4.5_0007979g0070 Nicotiana tabacum HOM05D007371 ORTHO05D009319 4.1e-11 71.2 36 88.9
CAN.G262.7 Capsicum annuum HOM05D007371 ORTHO05D009319 2.7e-10 68.6 41 78.0
Potri.013G075100 Populus trichocarpa HOM05D007371 ORTHO05D009319 5.9e-10 67.4 43 65.1
Mapoly0048s0040 Marchantia polymorpha HOM05D007371 ORTHO05D009319 1.5e-08 62.8 76 40.8
Hund24330 Selenicereus undatus HOM05D007371 ORTHO05D009319 2.7e-07 58.5 41 68.3
BolSC45t60908H Brassica oleracea HOM05D007371 ORTHO05D009319 8.8e-06 53.5 30 73.3


User provided reference genes

Program Settings