Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0211741 Helianthus annuus HOM05D002431 ORTHO05D002543 6.3e-146 520.8 269 100.0
HanXRQChr15g0481901 Helianthus annuus HOM05D002431 ORTHO05D002543 3.9e-127 458.4 253 94.5
Lsat_1_v5_gn_7_27321 Lactuca sativa HOM05D002431 ORTHO05D002543 1.1e-84 317.4 265 68.7
ECA236G4122 Erigeron canadensis HOM05D002431 ORTHO05D002543 2.4e-84 316.2 272 69.5
HanXRQChr04g0116471 Helianthus annuus HOM05D002431 ORTHO05D002543 1.0e-74 284.3 255 66.7
CSS0004223 Camellia sinensis var. sinensis HOM05D002431 ORTHO05D002543 2.1e-56 223.4 279 53.4
Rhsim13G0118000 Rhododendron simsii HOM05D002431 ORTHO05D002543 1.0e-55 221.1 277 52.0
GSVIVG01021550001 Vitis vinifera HOM05D002431 ORTHO05D002543 8.8e-55 218.0 287 51.2
CiPaw.09G119500 Carya illinoinensis HOM05D002431 ORTHO05D002543 2.6e-54 216.5 286 49.3
Lj1C1169T6 Lonicera japonica HOM05D002431 ORTHO05D002543 4.4e-54 215.7 263 52.5
Actinidia39591 Actinidia chinensis HOM05D002431 ORTHO05D002543 9.7e-54 214.5 264 50.8
Lj2A322T64 Lonicera japonica HOM05D002431 ORTHO05D002543 4.8e-53 212.2 283 50.5
vmacro03430 Vaccinium macrocarpon HOM05D002431 ORTHO05D002543 6.3e-53 211.8 302 48.3
Actinidia03347 Actinidia chinensis HOM05D002431 ORTHO05D002543 7.0e-52 208.4 281 49.5
Hma1.2p1_0586F.1_g183850 Hydrangea macrophylla HOM05D002431 ORTHO05D002543 7.0e-52 208.4 289 48.4
Actinidia32345 Actinidia chinensis HOM05D002431 ORTHO05D002543 1.0e-50 204.5 257 49.8
TWI09G0860 Tripterygium wilfordii HOM05D002431 ORTHO05D002543 1.5e-49 200.7 293 47.1
COL.COLO4_31008 Corchorus olitorius HOM05D002431 ORTHO05D002543 2.5e-49 199.9 278 48.6
DCAR_003887 Daucus carota HOM05D002431 ORTHO05D002543 2.5e-49 199.9 282 48.2
CSS0023204 Camellia sinensis var. sinensis HOM05D002431 ORTHO05D002543 3.2e-49 199.5 263 51.3
Gorai.009G152800 Gossypium raimondii HOM05D002431 ORTHO05D002543 1.2e-48 197.6 286 47.6
Manes.17G074250 Manihot esculenta HOM05D002431 ORTHO05D002543 1.2e-48 197.6 268 50.0
Gohir.D05G148600 Gossypium hirsutum HOM05D002431 ORTHO05D002543 1.6e-48 197.2 286 47.6
Ca_18160_v3 Cicer arietinum L. HOM05D002431 ORTHO05D002543 6.1e-48 195.3 292 43.8
DCAR_027887 Daucus carota HOM05D002431 ORTHO05D002543 6.1e-48 195.3 277 48.7
Gohir.A05G146300 Gossypium hirsutum HOM05D002431 ORTHO05D002543 6.1e-48 195.3 286 46.9
Psat7g078600 Pisum sativum HOM05D002431 ORTHO05D002543 8.0e-48 194.9 275 45.1
VMungo0251G2807 Vigna mungo HOM05D002431 ORTHO05D002543 1.8e-47 193.7 276 48.9
Duzib192G0720 Durio zibethinus HOM05D002431 ORTHO05D002543 2.3e-47 193.4 285 47.4
Nitab4.5_0000315g0020 Nicotiana tabacum HOM05D002431 ORTHO05D002543 3.0e-47 193.0 269 46.8
Glyma.05G143500 Glycine max HOM05D002431 ORTHO05D002543 5.2e-47 192.2 288 44.8
Dinv32212 Davidia involucrata HOM05D002431 ORTHO05D002543 6.7e-47 191.8 278 48.2
Potri.001G358600 Populus trichocarpa HOM05D002431 ORTHO05D002543 6.7e-47 191.8 280 46.8
Lj4g0021792 Lotus japonicus HOM05D002431 ORTHO05D002543 8.8e-47 191.4 292 44.9
TPR.G9577 Trifolium pratense HOM05D002431 ORTHO05D002543 1.5e-46 190.7 286 44.4
Duzib235G1098 Durio zibethinus HOM05D002431 ORTHO05D002543 2.0e-46 190.3 280 46.8
Medtr8g079482 Medicago truncatula HOM05D002431 ORTHO05D002543 2.0e-46 190.3 277 45.5
Eucgr.D00265 Eucalyptus grandis HOM05D002431 ORTHO05D002543 4.4e-46 189.1 295 45.8
Manes.15G125100 Manihot esculenta HOM05D002431 ORTHO05D002543 7.5e-46 188.3 291 48.5
TWI73G0305 Tripterygium wilfordii HOM05D002431 ORTHO05D002543 7.5e-46 188.3 292 46.9
CANSAT35G0357 Cannabis sativa HOM05D002431 ORTHO05D002543 9.7e-46 188.0 283 44.9
Cc09_g08760 Coffea canephora HOM05D002431 ORTHO05D002543 2.2e-45 186.8 286 45.8
SalBow8G1983 Salvia bowleyana HOM05D002431 ORTHO05D002543 2.8e-45 186.4 279 46.6
CAN.G90.10 Capsicum annuum HOM05D002431 ORTHO05D002543 3.7e-45 186.0 282 45.4
Glyma.08G099900 Glycine max HOM05D002431 ORTHO05D002543 3.7e-45 186.0 288 44.1
Duzib160G0180 Durio zibethinus HOM05D002431 ORTHO05D002543 8.2e-45 184.9 285 45.3
Glyma.08G231800 Glycine max HOM05D002431 ORTHO05D002543 8.2e-45 184.9 288 44.1
Haze_05685 Corylus avellana HOM05D002431 ORTHO05D002543 1.1e-44 184.5 273 45.8
Peaxi162Scf00045g02428 Petunia axillaris HOM05D002431 ORTHO05D002543 3.1e-44 183.0 280 42.9
Sabra16G0236400 Salix brachista HOM05D002431 ORTHO05D002543 3.1e-44 183.0 298 45.0
Nitab4.5_0005655g0020 Nicotiana tabacum HOM05D002431 ORTHO05D002543 4.1e-44 182.6 279 44.4
QL05p055058 Quercus lobata HOM05D002431 ORTHO05D002543 5.3e-44 182.2 295 45.1
Thecc.06G144200 Theobroma cacao HOM05D002431 ORTHO05D002543 5.3e-44 182.2 264 47.0
Cfa000896 Carpinus fangiana HOM05D002431 ORTHO05D002543 1.2e-43 181.0 273 45.1
Sc17g0004790 Simmondsia chinensis HOM05D002431 ORTHO05D002543 2.7e-43 179.9 284 44.7
Peaxi162Scf00465g00066 Petunia axillaris HOM05D002431 ORTHO05D002543 3.5e-43 179.5 282 45.0
Cpa.g.sc17.51 Carica papaya HOM05D002431 ORTHO05D002543 5.9e-43 178.7 279 45.9
Lalb_Chr07g0187481 Lupinus albus HOM05D002431 ORTHO05D002543 1.3e-42 177.6 289 43.3
CiPaw.10G088700 Carya illinoinensis HOM05D002431 ORTHO05D002543 1.7e-42 177.2 275 45.1
ClCG01G024900 Citrullus lanatus HOM05D002431 ORTHO05D002543 2.9e-42 176.4 294 45.9
CsaV3_6G052050 Cucumis sativus L. HOM05D002431 ORTHO05D002543 2.9e-42 176.4 295 46.4
Ciclev10014853m.g Citrus clementina HOM05D002431 ORTHO05D002543 5.0e-42 175.6 288 44.8
Migut.M00879 Erythranthe guttata HOM05D002431 ORTHO05D002543 5.0e-42 175.6 284 43.3
Oeu031315.1 Olea europaea HOM05D002431 ORTHO05D002543 5.0e-42 175.6 286 44.1
Lalb_Chr13g0294021 Lupinus albus HOM05D002431 ORTHO05D002543 8.5e-42 174.9 288 43.1
TAR629G2085 Trochodendron aralioides HOM05D002431 ORTHO05D002543 1.9e-41 173.7 303 41.9
Sed0007665 Sechium edule HOM05D002431 ORTHO05D002543 3.2e-41 172.9 283 46.3
CSS0041267 Camellia sinensis var. sinensis HOM05D002431 ORTHO05D002543 4.2e-41 172.6 227 52.0
Sed0000189 Sechium edule HOM05D002431 ORTHO05D002543 4.2e-41 172.6 286 45.5
FvH4_3g05020 Fragaria vesca HOM05D002431 ORTHO05D002543 9.4e-41 171.4 276 45.3
MD10G1258000 Malus domestica HOM05D002431 ORTHO05D002543 9.4e-41 171.4 291 40.9
Prupe.4G085800 Prunus persica HOM05D002431 ORTHO05D002543 9.4e-41 171.4 291 41.9
TAR627G0788 Trochodendron aralioides HOM05D002431 ORTHO05D002543 3.6e-40 169.5 294 43.2
FAN11G3406 Fragaria x ananassa HOM05D002431 ORTHO05D002543 8.0e-40 168.3 273 45.4
Sed0014194 Sechium edule HOM05D002431 ORTHO05D002543 5.2e-39 165.6 278 46.0
FAN25G0203 Fragaria x ananassa HOM05D002431 ORTHO05D002543 1.5e-38 164.1 276 44.2
Gorai.011G048100 Gossypium raimondii HOM05D002431 ORTHO05D002543 1.5e-38 164.1 221 49.8
Hund17751 Selenicereus undatus HOM05D002431 ORTHO05D002543 2.6e-38 163.3 261 43.7
AUR62030132 Chenopodium quinoa HOM05D002431 ORTHO05D002543 3.4e-38 162.9 263 42.6
PGR083G0955 Punica granatum HOM05D002431 ORTHO05D002543 4.4e-38 162.5 297 42.1
FAN16G3322 Fragaria x ananassa HOM05D002431 ORTHO05D002543 5.7e-38 162.2 276 44.6
Phvul.002G177800 Phaseolus vulgaris HOM05D002431 ORTHO05D002543 7.5e-38 161.8 273 42.5
Gohir.D10G045200 Gossypium hirsutum HOM05D002431 ORTHO05D002543 9.8e-38 161.4 220 50.0
arahy.Tifrunner.gnm1.ann1.X1RNA0 Arachis hypogaea HOM05D002431 ORTHO05D002543 1.7e-37 160.6 283 40.6
arahy.Tifrunner.gnm1.ann1.XA2RWL Arachis hypogaea HOM05D002431 ORTHO05D002543 1.7e-37 160.6 281 41.6
MSTRG.16265 Avicennia marina HOM05D002431 ORTHO05D002543 2.8e-37 159.8 225 48.4
RcHm_v2.0_Chr5g0014951 Rosa chinensis HOM05D002431 ORTHO05D002543 2.8e-37 159.8 276 43.1
AUR62002679 Chenopodium quinoa HOM05D002431 ORTHO05D002543 6.3e-37 158.7 268 43.7
Nn3g20327 Nelumbo nucifera HOM05D002431 ORTHO05D002543 8.3e-37 158.3 305 40.7
DCAR_007871 Daucus carota HOM05D002431 ORTHO05D002543 2.4e-36 156.8 281 42.0
MELO3C007106.2 Cucumis melo HOM05D002431 ORTHO05D002543 4.1e-36 156.0 283 45.2
Nn4g26635 Nelumbo nucifera HOM05D002431 ORTHO05D002543 5.4e-36 155.6 304 40.1
MSTRG.7514 Avicennia marina HOM05D002431 ORTHO05D002543 7.0e-36 155.2 276 43.8
EL10Ac8g19626 Beta vulgaris HOM05D002431 ORTHO05D002543 9.1e-36 154.8 266 42.1
Gohir.A10G044000 Gossypium hirsutum HOM05D002431 ORTHO05D002543 2.0e-35 153.7 225 47.1
MD05G1279300 Malus domestica HOM05D002431 ORTHO05D002543 4.5e-35 152.5 247 41.7
PGSC0003DMG400012066 Solanum tuberosum HOM05D002431 ORTHO05D002543 8.6e-34 148.3 278 43.9
SGA_v2.0_scaffold223G42825 Striga asiatica HOM05D002431 ORTHO05D002543 8.6e-34 148.3 251 43.0
PSO675G2568 Papaver somniferum HOM05D002431 ORTHO05D002543 2.5e-33 146.7 269 42.0
PSO541G1681 Papaver somniferum HOM05D002431 ORTHO05D002543 5.5e-33 145.6 272 41.9
MBI18_g11217_MAGBIO Magnolia biondii HOM05D002431 ORTHO05D002543 4.4e-30 136.0 249 41.8
Ah.14g086280 Amaranthus hybridus HOM05D002205 ORTHO05D004847 2.4e-28 130.2 284 37.3
unitig_92.g28168 Utricularia gibba HOM05D002431 ORTHO05D002543 1.6e-27 127.5 285 38.6
arahy.Tifrunner.gnm1.ann1.5G4PYE Arachis hypogaea HOM05D002431 ORTHO05D002543 3.5e-27 126.3 259 40.9
arahy.Tifrunner.gnm1.ann1.320UH0 Arachis hypogaea HOM05D002431 ORTHO05D002543 1.0e-26 124.8 259 41.3
Rhsim12G0064800 Rhododendron simsii HOM05D002431 ORTHO05D002543 1.3e-26 124.4 247 38.9
TAR627G0828 Trochodendron aralioides HOM05D002431 ORTHO05D002543 1.2e-24 117.9 186 40.9
THA.LOC104812681 Tarenaya hassleriana HOM05D002431 ORTHO05D002543 1.4e-23 114.4 176 48.9
THA.LOC104820668 Tarenaya hassleriana HOM05D002431 ORTHO05D002543 4.0e-23 112.8 175 47.4
Carub.0001s2854 Capsella rubella HOM05D002431 ORTHO05D002543 5.2e-23 112.5 281 39.9
CDE05G0382 Ceratophyllum demersum HOM05D002431 ORTHO05D002543 2.6e-22 110.2 248 38.7
unitig_37.g12086 Utricularia gibba HOM05D002431 ORTHO05D002543 7.5e-22 108.6 228 38.6
AT1G30320 Arabidopsis thaliana HOM05D002431 ORTHO05D002543 1.7e-21 107.5 268 38.4
Oeu015212.1 Olea europaea HOM05D002431 ORTHO05D002543 3.7e-21 106.3 166 42.8
BcaB03g12209 Brassica carinata HOM05D002431 ORTHO05D002543 4.9e-21 105.9 262 38.5
BcaC01g00183 Brassica carinata HOM05D002431 ORTHO05D002543 4.9e-21 105.9 193 43.0
A08p24520 Brassica napus HOM05D002431 ORTHO05D002543 2.4e-20 103.6 193 42.5
BcaC05g27063 Brassica carinata HOM05D002431 ORTHO05D002543 4.1e-20 102.8 264 36.7
C05p29220 Brassica napus HOM05D002431 ORTHO05D002543 4.1e-20 102.8 264 36.7
C03p76670 Brassica napus HOM05D002431 ORTHO05D002543 5.4e-20 102.4 182 42.9
CARHR029700 Cardamine hirsuta HOM05D002431 ORTHO05D002543 5.4e-20 102.4 243 40.3
A09p36140 Brassica napus HOM05D002431 ORTHO05D002543 7.0e-20 102.1 232 40.1
BraA08t34408Z Brassica rapa HOM05D002431 ORTHO05D002543 9.2e-20 101.7 193 42.0
Thhalv10007414m.g Eutrema salsugineum HOM05D002431 ORTHO05D002543 1.2e-19 101.3 268 38.1
BolC3t19923H Brassica oleracea HOM05D002431 ORTHO05D002543 1.6e-19 100.9 193 42.5
BraA09t39141Z Brassica rapa HOM05D002431 ORTHO05D002543 3.5e-19 99.8 268 35.4
BolC5t31654H Brassica oleracea HOM05D002431 ORTHO05D002543 5.9e-19 99.0 277 35.0
AL1G44260 Arabidopsis lyrata HOM05D002431 ORTHO05D002543 7.8e-19 98.6 274 38.3
arahy.Tifrunner.gnm1.ann1.VMT0UR Arachis hypogaea HOM05D002431 ORTHO05D004688 1.0e-18 98.2 121 52.1
BcaB07g32641 Brassica carinata HOM05D002431 ORTHO05D002543 1.0e-18 98.2 270 36.7
Sopen08g014470 Solanum pennellii HOM05D002431 ORTHO05D000001 1.0e-18 98.2 206 40.8
Solyc08g045640.3 Solanum lycopersicum HOM05D002431 ORTHO05D002543 3.0e-18 96.7 206 40.3
Sp1g26180 Schrenkiella parvula HOM05D002431 ORTHO05D002543 4.3e-17 92.8 270 36.3
THA.LOC104814313 Tarenaya hassleriana HOM05D002431 ORTHO05D002543 1.6e-16 90.9 225 36.4
Os04g0620200 Oryza sativa ssp. japonica HOM05D002431 ORTHO05D002543 1.8e-15 87.4 182 36.8
BNapus_Darmor_BZH_scaffold_145p00120 Brassica napus HOM05D002431 ORTHO05D002543 1.7e-13 80.9 233 35.6
HPP92_019501 Vanilla planifolia HOM05D002431 ORTHO05D002543 3.2e-12 76.6 253 32.4
ATR1098G011 Amborella trichopoda HOM05D002431 ORTHO05D002543 7.8e-11 72.0 241 32.4
Atru.chr10.1073 Acer truncatum HOM05D002431 ORTHO05D002543 3.9e-10 69.7 61 68.9
RhsimUnG0003400 Rhododendron simsii HOM05D002431 ORTHO05D002543 2.5e-09 67.0 133 39.1
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 3.3e-09 66.6 149 41.6
Aa31LG6G5430 Aethionema arabicum HOM05D002431 ORTHO05D002543 7.3e-09 65.5 208 30.8
Zm00001eb070390 Zea mays HOM05D002431 ORTHO05D002543 2.1e-08 63.9 239 32.2
SEGI_29969 Sequoiadendron giganteum HOM05D002431 ORTHO05D002543 2.3e-07 60.5 219 29.7
TAR382G0001 Trochodendron aralioides HOM05D002431 ORTHO05D002543 6.8e-07 58.9 163 34.4
Nn3g18710 Nelumbo nucifera HOM05D002431 ORTHO05D002543 2.0e-06 57.4 160 32.5
Manes.10G068300 Manihot esculenta HOM05D002431 ORTHO05D002543 9.9e-06 55.1 229 27.9


User provided reference genes

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