Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0210871 Helianthus annuus HOM05D003657 ORTHO05D004286 3.2e-53 211.5 106 100.0
HanXRQChr17g0551341 Helianthus annuus HOM05D003657 ORTHO05D004286 2.1e-44 182.2 99 91.9
HanXRQChr08g0229531 Helianthus annuus HOM05D003657 ORTHO05D004286 2.6e-42 175.3 96 91.7
HanXRQChr17g0562071 Helianthus annuus HOM05D003657 ORTHO05D004286 1.7e-41 172.6 96 89.6
Lsat_1_v5_gn_9_19501 Lactuca sativa HOM05D003657 ORTHO05D004286 8.6e-38 160.2 96 84.4
Hma1.2p1_0227F.1_g096420 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 5.4e-32 141.0 98 70.4
Hma1.2p1_3301F.1_g335025 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 4.6e-31 137.9 98 67.3
ECA247G3640 Erigeron canadensis HOM05D003657 ORTHO05D004286 4.3e-29 131.3 76 84.2
Dinv28627 Davidia involucrata HOM05D003657 ORTHO05D004286 5.6e-29 131.0 119 57.1
CSS0030381 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 1.6e-28 129.4 118 58.5
vmacro14588 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 1.6e-28 129.4 117 57.3
Actinidia34451 Actinidia chinensis HOM05D003657 ORTHO05D004286 4.7e-28 127.9 118 59.3
CSS0035662 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 4.7e-28 127.9 118 58.5
Hma1.2p1_0863F.1_g229980 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 4.7e-28 127.9 115 59.1
vmacro02979 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 4.7e-28 127.9 106 62.3
ECA247G2752 Erigeron canadensis HOM05D003657 ORTHO05D004286 4.0e-27 124.8 87 72.4
Rhsim01G0235900 Rhododendron simsii HOM05D003657 ORTHO05D004286 4.0e-27 124.8 117 57.3
Actinidia23893 Actinidia chinensis HOM05D003657 ORTHO05D004286 6.8e-27 124.0 118 57.6
CSS0013743 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 6.8e-27 124.0 113 59.3
Gohir.A03G050300 Gossypium hirsutum HOM05D003657 ORTHO05D004286 6.8e-27 124.0 119 53.8
Gohir.D03G117100 Gossypium hirsutum HOM05D003657 ORTHO05D004286 6.8e-27 124.0 119 53.8
Gorai.003G123500 Gossypium raimondii HOM05D003657 ORTHO05D004286 6.8e-27 124.0 119 53.8
Oeu045526.2 Olea europaea HOM05D003657 ORTHO05D004286 6.8e-27 124.0 117 56.4
Potri.001G250200 Populus trichocarpa HOM05D003657 ORTHO05D004286 2.0e-26 122.5 116 54.3
Cpa.g.sc112.42 Carica papaya HOM05D003657 ORTHO05D004286 2.6e-26 122.1 113 55.8
DCAR_018959 Daucus carota HOM05D003657 ORTHO05D004286 2.6e-26 122.1 119 52.1
Migut.I00319 Erythranthe guttata HOM05D003657 ORTHO05D004286 4.4e-26 121.3 112 56.2
MBI15_g31118_MAGBIO Magnolia biondii HOM05D003657 ORTHO05D004286 5.8e-26 120.9 112 57.1
Manes.01G163000 Manihot esculenta HOM05D003657 ORTHO05D004286 5.8e-26 120.9 119 54.6
Cfa011669 Carpinus fangiana HOM05D003657 ORTHO05D004286 7.5e-26 120.6 119 55.5
Eucgr.B02268 Eucalyptus grandis HOM05D003657 ORTHO05D004286 7.5e-26 120.6 121 54.5
Peaxi162Scf00540g00620 Petunia axillaris HOM05D003657 ORTHO05D004286 7.5e-26 120.6 119 54.6
CSS0017673 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 9.8e-26 120.2 121 54.5
CANSAT54G0812 Cannabis sativa HOM05D003657 ORTHO05D004286 9.8e-26 120.2 118 54.2
Sabra16G0152200 Salix brachista HOM05D003657 ORTHO05D004286 9.8e-26 120.2 114 54.4
Sed0018588 Sechium edule HOM05D003657 ORTHO05D004286 9.8e-26 120.2 112 58.0
Thecc.09G304100 Theobroma cacao HOM05D003657 ORTHO05D004286 9.8e-26 120.2 118 52.5
GSVIVG01024772001 Vitis vinifera HOM05D003657 ORTHO05D004286 9.8e-26 120.2 118 52.5
Aqoxy4G02626 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 1.3e-25 119.8 119 55.5
CAN.G394.117 Capsicum annuum HOM05D003657 ORTHO05D004286 1.7e-25 119.4 119 53.8
Haze_24275 Corylus avellana HOM05D003657 ORTHO05D004286 1.7e-25 119.4 119 55.5
Duzib168G2233 Durio zibethinus HOM05D003657 ORTHO05D004286 1.7e-25 119.4 119 52.9
Solyc06g076860.4 Solanum lycopersicum HOM05D003657 ORTHO05D004286 1.7e-25 119.4 119 53.8
Sopen06g033250 Solanum pennellii HOM05D003657 ORTHO05D004286 1.7e-25 119.4 119 53.8
CiPaw.14G060100 Carya illinoinensis HOM05D003657 ORTHO05D004286 2.2e-25 119.0 118 52.5
Nn4g24153 Nelumbo nucifera HOM05D003657 ORTHO05D004286 2.2e-25 119.0 118 54.2
PSO339G1362 Papaver somniferum HOM05D003657 ORTHO05D004286 2.2e-25 119.0 116 55.2
PSO384G3334 Papaver somniferum HOM05D003657 ORTHO05D004286 2.2e-25 119.0 116 55.2
QL01p037650 Quercus lobata HOM05D003657 ORTHO05D004286 2.2e-25 119.0 119 52.9
PGSC0003DMG400030351 Solanum tuberosum HOM05D003657 ORTHO05D004286 2.2e-25 119.0 119 53.8
Cc01_g14050 Coffea canephora HOM05D003657 ORTHO05D004286 2.9e-25 118.6 111 54.1
Duzib170G0663 Durio zibethinus HOM05D003657 ORTHO05D004286 2.9e-25 118.6 119 52.1
Nitab4.5_0000807g0050 Nicotiana tabacum HOM05D003657 ORTHO05D004286 4.9e-25 117.9 123 52.0
Aqoxy2G02701 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 6.4e-25 117.5 119 54.6
ClCG02G019640 Citrullus lanatus HOM05D003657 ORTHO05D004286 6.4e-25 117.5 113 54.9
Nn2g13661 Nelumbo nucifera HOM05D003657 ORTHO05D004286 6.4e-25 117.5 118 53.4
Aa31LG5G6800 Aethionema arabicum HOM05D003657 ORTHO05D004286 8.3e-25 117.1 101 57.4
Ca_14923_v3 Cicer arietinum L. HOM05D003657 ORTHO05D004286 8.3e-25 117.1 118 51.7
SalBow6G0197 Salvia bowleyana HOM05D003657 ORTHO05D004286 8.3e-25 117.1 107 54.2
CiPaw.13G079800 Carya illinoinensis HOM05D003657 ORTHO05D004286 1.4e-24 116.3 119 52.9
Lj4A394T19 Lonicera japonica HOM05D003657 ORTHO05D004286 1.4e-24 116.3 118 54.2
Lj4C400T2 Lonicera japonica HOM05D003657 ORTHO05D004286 1.4e-24 116.3 119 54.6
AL1G17420 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 1.9e-24 115.9 101 56.4
EL10Ac7g16143 Beta vulgaris HOM05D003657 ORTHO05D004286 1.9e-24 115.9 125 48.0
FAN16G1802 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.9e-24 115.9 121 52.9
Nitab4.5_0000170g0210 Nicotiana tabacum HOM05D003657 ORTHO05D004286 1.9e-24 115.9 123 51.2
MELO3C025862.2 Cucumis melo HOM05D003657 ORTHO05D004286 2.4e-24 115.5 113 54.9
CsaV3_6G016310 Cucumis sativus L. HOM05D003657 ORTHO05D004286 2.4e-24 115.5 113 53.1
FvH4_3g38340 Fragaria vesca HOM05D003657 ORTHO05D004286 2.4e-24 115.5 121 53.7
FAN11G3726 Fragaria x ananassa HOM05D003657 ORTHO05D004286 2.4e-24 115.5 121 53.7
Ciclev10030030m.g Citrus clementina HOM05D003657 ORTHO05D004286 3.2e-24 115.2 123 49.6
C05p05340 Brassica napus HOM05D003657 ORTHO05D004286 4.1e-24 114.8 106 52.8
THA.LOC104800725 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 4.1e-24 114.8 101 56.4
FAN21G3798 Fragaria x ananassa HOM05D003657 ORTHO05D004286 5.4e-24 114.4 121 52.9
Medtr3g463490 Medicago truncatula HOM05D003657 ORTHO05D004286 7.0e-24 114.0 118 50.0
CSS0012712 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 9.2e-24 113.6 96 62.5
TPR.G21184 Trifolium pratense HOM05D003657 ORTHO05D004286 9.2e-24 113.6 118 51.7
A10p05840 Brassica napus HOM05D003657 ORTHO05D004286 1.2e-23 113.2 101 55.4
BraA10t42845Z Brassica rapa HOM05D003657 ORTHO05D004286 1.2e-23 113.2 101 55.4
CARHR006990 Cardamine hirsuta HOM05D003657 ORTHO05D004286 1.2e-23 113.2 101 53.5
RcHm_v2.0_Chr4g0399271 Rosa chinensis HOM05D003657 ORTHO05D004286 1.2e-23 113.2 121 53.7
RcHm_v2.0_Chr5g0068951 Rosa chinensis HOM05D003657 ORTHO05D004286 1.2e-23 113.2 121 53.7
FAN25G3712 Fragaria x ananassa HOM05D003657 ORTHO05D004286 2.0e-23 112.5 121 52.9
BcaC01g05004 Brassica carinata HOM05D002033 ORTHO05D002181 2.7e-23 112.1 101 54.5
A03p26150 Brassica napus HOM05D002033 ORTHO05D002181 2.7e-23 112.1 101 54.5
C03p31210 Brassica napus HOM05D002033 ORTHO05D002181 2.7e-23 112.1 101 54.5
BolC3t15469H Brassica oleracea HOM05D003657 ORTHO05D004286 2.7e-23 112.1 101 54.5
BraA03t11830Z Brassica rapa HOM05D002033 ORTHO05D002181 2.7e-23 112.1 101 54.5
AT1G07270 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 3.5e-23 111.7 101 54.5
AUR62020110 Chenopodium quinoa HOM05D003657 ORTHO05D004286 3.5e-23 111.7 117 48.7
Psat5g159760 Pisum sativum HOM05D003657 ORTHO05D004286 3.5e-23 111.7 118 49.2
ATR0618G109 Amborella trichopoda HOM05D003657 ORTHO05D004286 4.6e-23 111.3 119 52.1
Sp4g12400 Schrenkiella parvula HOM05D003657 ORTHO05D004286 4.6e-23 111.3 101 54.5
Hund04875 Selenicereus undatus HOM05D003657 ORTHO05D004286 4.6e-23 111.3 117 49.6
SEGI_02229 Sequoiadendron giganteum HOM05D003657 ORTHO05D004286 4.6e-23 111.3 118 50.0
TWI14G1047 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 4.6e-23 111.3 120 50.8
Ah.08g221030 Amaranthus hybridus HOM05D003657 ORTHO05D004286 6.0e-23 110.9 116 46.6
Sc12g0000820 Simmondsia chinensis HOM05D003657 ORTHO05D004286 6.0e-23 110.9 112 48.2
TWI79G1454 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 6.0e-23 110.9 118 51.7
Aa31LG5G550 Aethionema arabicum HOM05D003657 ORTHO05D004286 7.8e-23 110.5 100 56.0
PGR102G3249 Punica granatum HOM05D003657 ORTHO05D004286 7.8e-23 110.5 119 51.3
THA.LOC104816080 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 7.8e-23 110.5 98 56.1
BcaB01g03143 Brassica carinata HOM05D002033 ORTHO05D002181 1.3e-22 109.8 101 52.5
Lalb_Chr04g0252271 Lupinus albus HOM05D003657 ORTHO05D004286 1.7e-22 109.4 129 51.2
Lalb_Chr17g0345031 Lupinus albus HOM05D003657 ORTHO05D004286 1.7e-22 109.4 119 51.3
VMungo0540G2171 Vigna mungo HOM05D003657 ORTHO05D004286 1.7e-22 109.4 119 48.7
C04p21110 Brassica napus HOM05D003657 ORTHO05D004286 3.9e-22 108.2 101 52.5
Thhalv10016540m.g Eutrema salsugineum HOM05D003657 ORTHO05D004286 3.9e-22 108.2 101 53.5
Glyma.18G066900 Glycine max HOM05D003657 ORTHO05D004286 5.0e-22 107.8 119 49.6
Nitab4.5_0005502g0010 Nicotiana tabacum HOM05D003657 ORTHO05D004286 5.0e-22 107.8 134 47.0
Prupe.6G059500 Prunus persica HOM05D003657 ORTHO05D004286 5.0e-22 107.8 118 48.3
BcaC02g11054 Brassica carinata HOM05D003657 ORTHO05D004286 1.1e-21 106.7 101 51.5
Carub.0001s0657 Capsella rubella HOM05D003657 ORTHO05D004286 1.1e-21 106.7 101 51.5
Pp3c2_14050 Physcomitrium patens HOM05D003657 ORTHO05D004286 1.5e-21 106.3 115 47.8
Phvul.006G064300 Phaseolus vulgaris HOM05D003657 ORTHO05D004286 1.9e-21 105.9 119 47.9
SGA_v2.0_scaffold28G11769 Striga asiatica HOM05D003657 ORTHO05D004286 2.5e-21 105.5 138 43.5
AL4G24450 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 3.3e-21 105.1 101 52.5
AT2G29680 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 3.3e-21 105.1 101 53.5
COL.COLO4_19124 Corchorus olitorius HOM05D003657 ORTHO05D004286 4.3e-21 104.8 116 49.1
Lj6g0007931 Lotus japonicus HOM05D003657 ORTHO05D004286 5.6e-21 104.4 119 47.9
arahy.Tifrunner.gnm1.ann1.XTS0HX Arachis hypogaea HOM05D003657 ORTHO05D004286 7.3e-21 104.0 119 48.7
MD03G1072700 Malus domestica HOM05D003657 ORTHO05D004286 7.3e-21 104.0 120 46.7
SHI00483 Sapria himalayana HOM05D003657 ORTHO05D004286 7.3e-21 104.0 119 47.9
BraA05t20483Z Brassica rapa HOM05D003657 ORTHO05D004286 1.2e-20 103.2 111 48.6
CARHR123010 Cardamine hirsuta HOM05D003657 ORTHO05D004286 1.2e-20 103.2 101 51.5
SEGI_38514 Sequoiadendron giganteum HOM05D003657 ORTHO05D004286 1.2e-20 103.2 113 50.4
unitig_0.g1519 Utricularia gibba HOM05D003657 ORTHO05D004286 1.2e-20 103.2 111 49.5
arahy.Tifrunner.gnm1.ann1.NA7AU5 Arachis hypogaea HOM05D003657 ORTHO05D004286 1.6e-20 102.8 119 48.7
Carub.0004s1078 Capsella rubella HOM05D003657 ORTHO05D004286 1.6e-20 102.8 101 51.5
Os01g0856000 Oryza sativa ssp. japonica HOM05D003657 ORTHO05D004286 1.6e-20 102.8 97 53.6
MD11G1078800 Malus domestica HOM05D003657 ORTHO05D004286 2.8e-20 102.1 120 45.8
HPP92_015512 Vanilla planifolia HOM05D003657 ORTHO05D004286 8.1e-20 100.5 93 54.8
Lj2A1080T42 Lonicera japonica HOM05D003657 ORTHO05D004286 1.8e-19 99.4 98 56.1
AUR62001671 Chenopodium quinoa HOM05D003657 ORTHO05D004286 6.8e-19 97.4 142 40.1
SMO137G0247 Selaginella moellendorffii HOM05D003657 ORTHO05D004286 8.9e-19 97.1 102 48.0
Zm00001eb367100 Zea mays HOM05D003657 ORTHO05D004286 8.9e-19 97.1 97 51.5
Zm00001eb147490 Zea mays HOM05D003657 ORTHO05D004286 3.4e-18 95.1 97 51.5
ECA247G3569 Erigeron canadensis HOM05D000942 ORTHO05D000918 1.7e-17 92.8 79 63.3
Mapoly0042s0007 Marchantia polymorpha HOM05D003657 ORTHO05D004286 6.4e-17 90.9 122 41.0
Migut.G00378 Erythranthe guttata HOM05D003657 ORTHO05D004286 1.9e-16 89.4 56 73.2
HanXRQChr14g0433451 Helianthus annuus HOM05D003657 ORTHO05D004286 2.4e-16 89.0 46 93.5
AagrBONN_evm.TU.Sc2ySwM_228.2818 Anthoceros agrestis HOM05D003657 ORTHO05D004286 1.2e-15 86.7 121 41.3
Nitab4.5_0000010g0240 Nicotiana tabacum HOM05D003657 ORTHO05D004286 2.7e-15 85.5 51 76.5
BolC5t29306H Brassica oleracea HOM05D003657 ORTHO05D004286 6.0e-15 84.3 81 51.9
Glyma.08G333800 Glycine max HOM05D003657 ORTHO05D004286 1.3e-14 83.2 116 45.7
CSS0044418 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 3.0e-14 82.0 105 46.7
CBR_g34218 Chara braunii HOM05D003657 ORTHO05D004286 1.6e-12 76.3 123 35.8
A05p15700 Brassica napus HOM05D003657 ORTHO05D004286 2.8e-12 75.5 77 46.8
CBR_g22272 Chara braunii HOM05D003657 ORTHO05D004286 4.7e-12 74.7 131 31.3
MCO07G225 Micromonas commoda HOM05D003657 ORTHO05D004286 1.4e-11 73.2 106 35.8
RcHm_v2.0_Chr2g0157111 Rosa chinensis HOM05D003657 ORTHO05D004286 2.0e-10 69.3 46 67.4
Lsat_1_v5_gn_7_93181 Lactuca sativa HOM05D003657 ORTHO05D004286 4.9e-09 64.7 48 70.8
arahy.Tifrunner.gnm1.ann1.RGQY4W Arachis hypogaea HOM05D003657 ORTHO05D004286 2.4e-08 62.4 96 38.5
RcHm_v2.0_Chr1g0327861 Rosa chinensis HOM05D003657 ORTHO05D004286 1.3e-06 56.6 40 60.0


User provided reference genes

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