Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0210731 Helianthus annuus HOM05D003388 ORTHO05D003616 1.0e-38 162.9 81 100.0
HanXRQChr08g0210711 Helianthus annuus HOM05D003388 ORTHO05D003616 8.0e-36 153.3 80 95.0
ECA233G4218 Erigeron canadensis HOM05D003388 ORTHO05D003616 1.2e-31 139.4 75 85.3
Lsat_1_v5_gn_8_50121 Lactuca sativa HOM05D003388 ORTHO05D003616 1.6e-31 139.0 74 93.2
CSS0011500 Camellia sinensis var. sinensis HOM05D003388 ORTHO05D003616 2.9e-25 118.2 76 72.4
Dinv34132 Davidia involucrata HOM05D003388 ORTHO05D003616 4.9e-25 117.5 75 70.7
Aqoxy3G03455 Aquilegia oxysepala HOM05D003388 ORTHO05D003616 1.1e-24 116.3 75 65.3
Hma1.2p1_1079F.1_g254900 Hydrangea macrophylla HOM05D003388 ORTHO05D003616 1.4e-24 115.9 74 70.3
Hma1.2p1_1079F.1_g254910 Hydrangea macrophylla HOM05D003388 ORTHO05D003616 1.4e-24 115.9 74 70.3
Nn3g17299 Nelumbo nucifera HOM05D003388 ORTHO05D003616 4.1e-24 114.4 80 67.5
Nitab4.5_0004300g0010 Nicotiana tabacum HOM05D003388 ORTHO05D003616 5.4e-24 114.0 76 68.4
DCAR_007170 Daucus carota HOM05D003388 ORTHO05D003616 1.2e-23 112.8 79 68.4
Lj3P1035T24 Lonicera japonica HOM05D003388 ORTHO05D003616 2.0e-23 112.1 76 69.7
Duzib251G0885 Durio zibethinus HOM05D003388 ORTHO05D003616 3.5e-23 111.3 80 65.0
Nitab4.5_0000040g0070 Nicotiana tabacum HOM05D003388 ORTHO05D003616 4.6e-23 110.9 73 68.5
PGR102G2155 Punica granatum HOM05D003388 ORTHO05D003616 1.3e-22 109.4 80 67.5
GSVIVG01012615001 Vitis vinifera HOM05D003388 ORTHO05D003616 1.3e-22 109.4 75 66.7
MSTRG.7787 Avicennia marina HOM05D003388 ORTHO05D003616 2.3e-22 108.6 75 68.0
Thecc.02G342400 Theobroma cacao HOM05D003388 ORTHO05D003616 2.3e-22 108.6 73 65.8
Gohir.D13G076800 Gossypium hirsutum HOM05D003388 ORTHO05D003616 5.0e-22 107.5 72 66.7
Gorai.013G087800 Gossypium raimondii HOM05D003388 ORTHO05D003616 5.0e-22 107.5 72 66.7
Sopen05g003620 Solanum pennellii HOM05D003388 ORTHO05D003616 6.6e-22 107.1 75 62.7
Cpa.g.sc1.49 Carica papaya HOM05D003388 ORTHO05D003616 8.6e-22 106.7 76 63.2
Duzib248G0503 Durio zibethinus HOM05D003388 ORTHO05D003616 1.1e-21 106.3 73 68.5
Lj4g0011095 Lotus japonicus HOM05D003388 ORTHO05D003616 1.1e-21 106.3 73 64.4
TAR629G0929 Trochodendron aralioides HOM05D003388 ORTHO05D003616 1.1e-21 106.3 73 68.5
COL.COLO4_27999 Corchorus olitorius HOM05D003388 ORTHO05D003616 1.5e-21 105.9 72 65.3
Actinidia33214 Actinidia chinensis HOM05D003388 ORTHO05D003616 1.9e-21 105.5 72 69.4
Medtr4g082140 Medicago truncatula HOM05D003388 ORTHO05D003616 2.5e-21 105.1 76 60.5
SalBow2G1725 Salvia bowleyana HOM05D003388 ORTHO05D003616 2.5e-21 105.1 72 63.9
ClCG05G024100 Citrullus lanatus HOM05D003388 ORTHO05D003616 3.3e-21 104.8 74 67.6
Cc11_g12730 Coffea canephora HOM05D003388 ORTHO05D003616 3.3e-21 104.8 82 59.8
Glyma.07G229200 Glycine max HOM05D003388 ORTHO05D003616 3.3e-21 104.8 79 62.0
BcaC05g26390 Brassica carinata HOM05D003388 ORTHO05D003616 4.3e-21 104.4 74 64.9
C05p24210 Brassica napus HOM05D003388 ORTHO05D003616 4.3e-21 104.4 74 64.9
BolC5t31157H Brassica oleracea HOM05D003388 ORTHO05D003616 4.3e-21 104.4 74 64.9
MELO3C012115.2 Cucumis melo HOM05D003388 ORTHO05D003616 4.3e-21 104.4 76 67.1
A09p40170 Brassica napus HOM05D003388 ORTHO05D003616 5.6e-21 104.0 74 64.9
BraA09t39515Z Brassica rapa HOM05D003388 ORTHO05D003616 5.6e-21 104.0 74 64.9
Rhsim10G0115600 Rhododendron simsii HOM05D003388 ORTHO05D003616 5.6e-21 104.0 74 70.3
Atru.chr11.1747 Acer truncatum HOM05D003388 ORTHO05D003616 7.3e-21 103.6 73 63.0
AUR62005822 Chenopodium quinoa HOM05D003388 ORTHO05D003616 7.3e-21 103.6 73 61.6
AUR62032817 Chenopodium quinoa HOM05D003388 ORTHO05D003616 7.3e-21 103.6 73 61.6
Ca_18822_v3 Cicer arietinum L. HOM05D003388 ORTHO05D003616 1.2e-20 102.8 73 60.3
Ca_30739_v3 Cicer arietinum L. HOM05D003388 ORTHO05D003616 1.2e-20 102.8 73 60.3
PGSC0003DMG400018436 Solanum tuberosum HOM05D003388 ORTHO05D003616 1.2e-20 102.8 72 62.5
Sp1g22050 Schrenkiella parvula HOM05D003388 ORTHO05D003616 1.6e-20 102.4 73 61.6
Sabra08G0066900 Salix brachista HOM05D003388 ORTHO05D003616 2.1e-20 102.1 71 67.6
Ciclev10031048m.g Citrus clementina HOM05D003388 ORTHO05D003616 2.8e-20 101.7 73 63.0
CsaV3_5G032950 Cucumis sativus L. HOM05D003388 ORTHO05D003616 2.8e-20 101.7 70 68.6
Carub.0001s2426 Capsella rubella HOM05D003388 ORTHO05D003616 3.6e-20 101.3 73 61.6
AT1G26760 Arabidopsis thaliana HOM05D003388 ORTHO05D003616 6.2e-20 100.5 73 61.6
PSO013G0084 Papaver somniferum HOM05D003388 ORTHO05D003616 6.2e-20 100.5 73 64.4
TWI75G1739 Tripterygium wilfordii HOM05D003388 ORTHO05D003616 6.2e-20 100.5 72 65.3
PSO832G1848 Papaver somniferum HOM05D003388 ORTHO05D003616 8.0e-20 100.1 73 64.4
Peaxi162Scf00222g00073 Petunia axillaris HOM05D003388 ORTHO05D003616 8.0e-20 100.1 74 63.5
Ah.03g134820 Amaranthus hybridus HOM05D003388 ORTHO05D003616 1.1e-19 99.8 80 60.0
AL1G38950 Arabidopsis lyrata HOM05D003388 ORTHO05D003616 1.1e-19 99.8 73 61.6
Migut.L01268 Erythranthe guttata HOM05D003388 ORTHO05D003616 1.1e-19 99.8 71 64.8
Thhalv10007288m.g Eutrema salsugineum HOM05D003388 ORTHO05D003616 1.1e-19 99.8 73 60.3
Eucgr.B03207 Eucalyptus grandis HOM05D003388 ORTHO05D003616 1.8e-19 99.0 73 63.0
CAN.G1335.17 Capsicum annuum HOM05D003388 ORTHO05D003616 2.3e-19 98.6 72 58.3
CARHR025200 Cardamine hirsuta HOM05D003388 ORTHO05D003616 2.3e-19 98.6 74 59.5
CiPaw.05G132000 Carya illinoinensis HOM05D003388 ORTHO05D003616 2.3e-19 98.6 72 61.1
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 3.1e-19 98.2 74 62.2
Psat7g160040 Pisum sativum HOM05D003388 ORTHO05D003616 4.0e-19 97.8 76 57.9
TPR.G34080 Trifolium pratense HOM05D003388 ORTHO05D003616 4.0e-19 97.8 69 59.4
FvH4_4g31050 Fragaria vesca HOM05D003388 ORTHO05D003616 5.2e-19 97.4 73 65.8
FAN12G0832 Fragaria x ananassa HOM05D003388 ORTHO05D003616 5.2e-19 97.4 73 65.8
PSO832G3938 Papaver somniferum HOM05D003388 ORTHO05D003616 5.2e-19 97.4 73 61.6
Sc14g0008080 Simmondsia chinensis HOM05D003388 ORTHO05D003616 5.2e-19 97.4 80 51.2
EL10Ac6g13243 Beta vulgaris HOM05D003388 ORTHO05D003616 6.8e-19 97.1 73 56.2
MD13G1069000 Malus domestica HOM05D003388 ORTHO05D003616 6.8e-19 97.1 73 63.0
Cfa008954 Carpinus fangiana HOM05D003388 ORTHO05D003616 2.0e-18 95.5 72 54.2
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 2.6e-18 95.1 75 56.0
Haze_11983 Corylus avellana HOM05D003388 ORTHO05D003616 2.6e-18 95.1 72 55.6
FAN17G1125 Fragaria x ananassa HOM05D003388 ORTHO05D003616 2.6e-18 95.1 73 64.4
FAN22G1619 Fragaria x ananassa HOM05D003388 ORTHO05D003616 2.6e-18 95.1 73 64.4
Potri.008G089500 Populus trichocarpa HOM05D003388 ORTHO05D003616 2.6e-18 95.1 71 60.6
RcHm_v2.0_Chr4g0439431 Rosa chinensis HOM05D003388 ORTHO05D003616 3.4e-18 94.7 73 64.4
Actinidia12300 Actinidia chinensis HOM05D003388 ORTHO05D003616 4.4e-18 94.4 73 65.8
MBI13_g11341_MAGBIO Magnolia biondii HOM05D003388 ORTHO05D003616 4.4e-18 94.4 69 62.3
Phvul.002G170100 Phaseolus vulgaris HOM05D003388 ORTHO05D003616 4.4e-18 94.4 72 56.9
Lalb_Chr09g0329211 Lupinus albus HOM05D003388 ORTHO05D003616 5.8e-18 94.0 75 53.3
Manes.01G034100 Manihot esculenta HOM05D003388 ORTHO05D003616 5.8e-18 94.0 66 63.6
THA.LOC104803358 Tarenaya hassleriana HOM05D003388 ORTHO05D003616 5.8e-18 94.0 78 55.1
Aa31LG7G8370 Aethionema arabicum HOM05D003388 ORTHO05D003616 9.8e-18 93.2 80 50.0
QL03p068106 Quercus lobata HOM05D003388 ORTHO05D003616 1.3e-17 92.8 72 54.2
CDE07G1327 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 1.7e-17 92.4 73 54.8
VMungo0251G1426 Vigna mungo HOM05D003388 ORTHO05D003616 1.7e-17 92.4 72 55.6
Prupe.1G278000 Prunus persica HOM05D003388 ORTHO05D003616 1.1e-16 89.7 73 57.5
CANSAT64G0380 Cannabis sativa HOM05D003388 ORTHO05D003616 1.4e-16 89.4 72 55.6
unitig_747.g21182 Utricularia gibba HOM05D003388 ORTHO05D003616 2.0e-15 85.5 72 52.8
Sed0018691 Sechium edule HOM05D003388 ORTHO05D003616 3.5e-15 84.7 63 61.9
Zm00001eb005310 Zea mays HOM05D003388 ORTHO05D003616 1.9e-13 79.0 74 50.0
Manes.05G105000 Manihot esculenta HOM05D003388 ORTHO05D003616 5.6e-13 77.4 62 53.2
Os03g0168700 Oryza sativa ssp. japonica HOM05D003388 ORTHO05D003616 7.3e-13 77.0 74 51.4
CiPaw.05G131500 Carya illinoinensis HOM05D003388 ORTHO05D003616 1.2e-12 76.3 72 52.8
vmacro10858 Vaccinium macrocarpon HOM05D003388 ORTHO05D003616 1.8e-11 72.4 56 60.7
ATR0564G546 Amborella trichopoda HOM05D003388 ORTHO05D003616 2.4e-08 62.0 60 50.0


User provided reference genes

Program Settings