Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 1.5e-161 572.8 278 100.0
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 2.4e-108 396.0 278 72.3
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 8.1e-96 354.4 279 64.2
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 1.3e-90 337.0 279 62.7
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 7.7e-70 268.1 294 50.7
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 6.5e-69 265.0 289 49.8
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 5.5e-68 261.9 284 52.8
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 7.2e-68 261.5 298 48.7
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 7.9e-67 258.1 297 49.8
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 3.9e-66 255.8 302 50.0
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 8.8e-66 254.6 292 51.0
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.5e-65 253.8 292 50.0
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 2.5e-65 253.1 288 49.0
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 5.7e-65 251.9 300 48.3
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 7.4e-65 251.5 297 49.2
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 1.7e-64 250.4 285 49.8
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 3.7e-64 249.2 296 47.3
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.3e-64 248.4 292 49.7
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 1.1e-63 247.7 285 49.5
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 1.4e-63 247.3 285 48.1
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 1.4e-63 247.3 299 46.8
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 1.4e-63 247.3 291 48.1
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 3.1e-63 246.1 284 48.6
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 3.1e-63 246.1 308 47.4
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 5.3e-63 245.4 288 47.9
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 6.9e-63 245.0 285 48.4
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 6.9e-63 245.0 291 47.4
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 6.9e-63 245.0 292 48.3
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 1.2e-62 244.2 293 48.1
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 1.5e-62 243.8 290 47.9
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 1.5e-62 243.8 288 47.9
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 1.5e-62 243.8 294 49.0
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 2.0e-62 243.4 284 47.9
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 2.0e-62 243.4 294 46.9
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 2.0e-62 243.4 288 48.6
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 2.6e-62 243.0 299 47.5
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 4.5e-62 242.3 290 47.2
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 1.0e-61 241.1 289 48.8
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.3e-61 240.7 285 48.1
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 1.3e-61 240.7 294 48.0
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.3e-61 240.7 293 46.8
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 1.3e-61 240.7 285 46.7
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 1.7e-61 240.4 316 45.9
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 1.7e-61 240.4 291 46.4
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 1.7e-61 240.4 295 47.5
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 2.2e-61 240.0 303 46.9
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 3.8e-61 239.2 303 46.5
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 5.0e-61 238.8 289 47.4
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 6.5e-61 238.4 295 47.1
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 8.5e-61 238.0 290 46.6
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 1.4e-60 237.3 294 47.6
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.9e-60 236.9 280 48.2
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 1.9e-60 236.9 301 45.8
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 1.9e-60 236.9 297 46.8
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 2.5e-60 236.5 278 47.8
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 2.5e-60 236.5 295 45.4
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 2.5e-60 236.5 289 47.4
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 4.2e-60 235.7 292 45.2
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 7.2e-60 235.0 285 48.1
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 9.4e-60 234.6 298 45.6
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 1.6e-59 233.8 294 46.9
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 1.6e-59 233.8 289 46.7
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 2.7e-59 233.0 309 46.0
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 7.9e-59 231.5 298 44.3
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.0e-58 231.1 295 45.8
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 1.8e-58 230.3 286 46.5
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 1.8e-58 230.3 307 44.0
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 2.3e-58 229.9 291 45.0
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 3.9e-58 229.2 295 45.1
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 5.1e-58 228.8 296 44.3
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 5.1e-58 228.8 278 46.8
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 1.1e-57 227.6 298 45.3
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 1.5e-57 227.3 295 45.8
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 1.7e-56 223.8 290 45.2
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 2.8e-56 223.0 296 43.9
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 3.7e-56 222.6 301 44.5
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 1.4e-55 220.7 220 53.2
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 5.3e-55 218.8 307 43.0
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 9.1e-55 218.0 323 43.7
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 2.2e-53 213.4 270 47.4
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 5.0e-53 212.2 276 47.5
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 8.5e-53 211.5 267 46.4
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 2.5e-52 209.9 276 44.2
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 1.6e-51 207.2 272 44.1
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 1.8e-50 203.8 276 44.6
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 1.3e-48 197.6 231 47.2
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 1.4e-47 194.1 340 36.5
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 7.0e-47 191.8 287 41.1
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 1.2e-46 191.0 258 44.2
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 3.2e-44 183.0 312 39.4
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 1.2e-43 181.0 282 40.8
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 1.5e-41 174.1 279 36.2
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 6.3e-40 168.7 124 66.9
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 2.4e-39 166.8 273 37.4
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 5.3e-39 165.6 291 38.5
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.2e-38 164.5 121 68.6
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.2e-38 164.5 121 66.9
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 2.0e-38 163.7 251 39.4
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 2.7e-38 163.3 243 41.6
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 3.5e-38 162.9 123 67.5
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.9e-37 159.8 122 64.8
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 8.5e-37 158.3 121 64.5
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 9.4e-36 154.8 260 36.5
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.6e-35 154.1 119 63.0
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.3e-34 150.2 266 37.6
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 4.0e-34 149.4 266 38.0
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 4.0e-34 149.4 279 34.4
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 4.4e-33 146.0 301 34.6
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 5.7e-33 145.6 266 37.6
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 1.8e-31 140.6 280 36.1
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 2.0e-30 137.1 278 32.7
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 3.8e-29 132.9 102 65.7
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 8.6e-29 131.7 276 35.1
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 1.1e-28 131.3 98 67.3
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 1.9e-28 130.6 99 66.7
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 7.2e-28 128.6 100 61.0
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 2.3e-26 123.6 217 37.8
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.7e-24 117.5 100 59.0
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 2.2e-24 117.1 284 31.3
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 2.8e-24 116.7 142 45.8
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 5.4e-23 112.5 292 33.2
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.2e-22 111.3 309 32.0
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 7.8e-22 108.6 138 44.2
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.3e-21 107.1 208 35.6
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.3e-21 107.1 138 44.2
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 5.0e-21 105.9 136 39.0
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 2.5e-20 103.6 184 36.4
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 5.6e-20 102.4 111 52.3
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 1.2e-17 94.7 147 39.5
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 6.0e-14 82.4 50 74.0
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 6.6e-13 79.0 184 34.8
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 7.3e-12 75.5 51 70.6
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 8.9e-10 68.6 110 37.3
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.7e-08 64.3 49 67.3


User provided reference genes

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