Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 1.3e-85 320.1 205 100.0
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 2.1e-56 223.0 205 76.1
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 3.3e-54 215.7 205 76.1
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 2.4e-52 209.5 243 67.5
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 2.2e-42 176.4 203 52.7
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 2.9e-42 176.0 202 51.5
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 3.8e-42 175.6 203 54.2
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.1e-41 174.1 207 52.2
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 9.4e-41 171.0 209 48.8
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 3.6e-40 169.1 207 46.4
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.0e-39 167.5 209 64.6
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 1.4e-39 167.2 218 53.2
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.8e-39 166.8 202 55.9
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 2.3e-39 166.4 210 61.9
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.5e-38 163.7 206 51.0
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.5e-38 163.7 206 52.9
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.6e-38 162.9 203 53.2
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 3.3e-38 162.5 220 57.7
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 4.4e-38 162.2 230 51.3
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 4.4e-38 162.2 208 46.6
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 4.4e-38 162.2 207 50.7
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 7.4e-38 161.4 208 59.6
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 7.4e-38 161.4 208 59.6
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 9.7e-38 161.0 202 63.9
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 9.7e-38 161.0 206 67.0
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.3e-37 160.6 201 54.2
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.2e-37 159.8 206 66.5
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 2.8e-37 159.5 211 63.5
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 4.8e-37 158.7 207 67.1
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.1e-36 157.5 206 65.0
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.4e-36 157.1 205 45.9
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.4e-36 157.1 206 67.0
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.4e-36 156.4 216 47.2
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 4.1e-36 155.6 208 58.2
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 4.1e-36 155.6 209 50.7
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 5.3e-36 155.2 210 51.4
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 5.3e-36 155.2 224 59.4
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 5.3e-36 155.2 210 51.0
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 7.0e-36 154.8 223 59.2
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 7.0e-36 154.8 212 44.8
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.6e-35 153.7 213 57.7
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.6e-35 153.7 213 57.7
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 1.6e-35 153.7 226 58.8
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.6e-35 153.7 203 47.3
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 2.0e-35 153.3 203 44.8
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 2.6e-35 152.9 216 44.4
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 3.5e-35 152.5 208 59.6
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 4.5e-35 152.1 202 45.5
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 4.5e-35 152.1 205 57.1
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.0e-34 151.0 206 50.0
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.7e-34 150.2 227 52.0
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.7e-34 150.2 194 49.5
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 2.2e-34 149.8 227 48.0
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 2.9e-34 149.4 208 53.8
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 2.9e-34 149.4 216 62.0
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 3.8e-34 149.1 230 43.0
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 6.5e-34 148.3 218 51.8
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 1.5e-33 147.1 218 59.6
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 1.5e-33 147.1 202 51.5
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.5e-33 147.1 207 55.6
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 2.5e-33 146.4 213 45.5
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 3.2e-33 146.0 212 57.5
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.2e-33 146.0 206 46.6
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 4.2e-33 145.6 223 47.5
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 5.5e-33 145.2 212 56.6
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.2e-33 144.8 216 63.0
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 7.2e-33 144.8 204 44.1
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 2.1e-32 143.3 203 54.2
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 2.1e-32 143.3 206 56.8
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 2.7e-32 142.9 210 55.2
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.7e-32 142.9 253 54.2
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 2.7e-32 142.9 222 52.3
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 2.7e-32 142.9 221 46.6
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.7e-32 142.9 221 41.6
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 3.6e-32 142.5 212 59.0
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 3.6e-32 142.5 212 59.0
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.6e-32 142.5 245 52.7
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 4.7e-32 142.1 200 55.0
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 6.1e-32 141.7 231 57.1
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 8.0e-32 141.4 203 56.2
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-31 140.6 202 52.5
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 1.4e-31 140.6 206 47.1
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 1.4e-31 140.6 210 55.7
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.8e-31 140.2 200 61.0
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 1.8e-31 140.2 215 54.4
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 3.0e-31 139.4 209 62.7
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 8.8e-31 137.9 202 51.5
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.2e-30 137.5 210 42.9
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 1.5e-30 137.1 202 51.5
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 2.0e-30 136.7 204 39.2
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 2.6e-30 136.3 202 51.0
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 2.6e-30 136.3 202 51.0
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 5.7e-30 135.2 205 50.7
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 9.7e-30 134.4 232 56.0
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.3e-29 134.0 221 51.6
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 2.8e-29 132.9 208 55.3
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 2.8e-29 132.9 225 50.7
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 2.8e-29 132.9 206 53.9
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.7e-29 132.5 203 38.9
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 8.2e-29 131.3 208 50.5
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 8.2e-29 131.3 211 56.4
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 1.1e-28 131.0 224 44.2
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-28 130.2 207 52.2
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.8e-28 130.2 211 49.3
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 2.4e-28 129.8 212 50.9
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 2.4e-28 129.8 213 50.2
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 3.1e-28 129.4 218 47.7
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 4.1e-28 129.0 231 38.5
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 7.0e-28 128.3 225 54.7
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 9.1e-28 127.9 208 38.9
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.2e-27 127.5 200 49.0
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.6e-27 127.1 218 49.5
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 4.5e-27 125.6 213 46.5
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 5.9e-27 125.2 197 47.2
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 1.3e-26 124.0 221 48.4
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 2.2e-26 123.2 199 39.7
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 2.2e-26 123.2 199 39.7
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 2.9e-26 122.9 200 57.5
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 3.8e-26 122.5 204 58.8
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 5.0e-26 122.1 221 47.5
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 6.5e-26 121.7 198 38.9
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 6.5e-26 121.7 192 40.1
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 8.5e-26 121.3 226 47.8
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 8.5e-26 121.3 163 49.1
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 8.5e-26 121.3 127 54.3
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.5e-25 120.6 209 44.0
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 3.2e-25 119.4 237 42.2
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 3.2e-25 119.4 215 43.3
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 5.5e-25 118.6 199 46.2
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.2e-24 117.5 220 38.6
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.6e-24 117.1 160 65.0
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 3.6e-24 115.9 218 49.5
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 3.6e-24 115.9 200 46.5
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 4.0e-23 112.5 214 43.5
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 6.8e-23 111.7 201 40.3
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 8.8e-23 111.3 204 52.5
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 2.6e-22 109.8 204 52.5
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-21 107.5 198 37.4
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-21 107.5 198 37.4
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.3e-21 107.5 198 37.4
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 2.2e-21 106.7 197 37.6
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.8e-21 106.3 203 42.9
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-20 104.4 154 42.2
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.4e-20 103.2 195 46.2
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 2.4e-20 103.2 197 45.2
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 2.4e-20 103.2 196 41.8
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 3.1e-20 102.8 199 44.7
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 4.1e-20 102.4 200 45.5
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 7.0e-20 101.7 201 45.3
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 9.1e-20 101.3 197 39.1
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 1.6e-19 100.5 197 39.1
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.0e-19 100.1 212 42.5
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 2.9e-18 96.3 107 52.3
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.8e-18 95.9 217 46.5
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 8.6e-18 94.7 197 38.1
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 2.5e-17 93.2 197 37.6
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 3.2e-17 92.8 151 47.0
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 3.2e-17 92.8 151 47.0
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 4.2e-17 92.4 151 48.3
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 4.2e-17 92.4 151 48.3
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.6e-16 90.5 203 31.5
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.8e-15 85.1 239 33.1
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.1e-12 76.3 238 34.9
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.1e-12 75.9 199 49.2
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 7.0e-12 75.1 198 49.0
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 9.2e-12 74.7 151 43.0
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.5e-11 72.8 133 36.1
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.5e-11 72.4 199 48.7
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 5.0e-10 68.9 203 28.6
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 6.6e-10 68.6 36 75.0
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 8.6e-10 68.2 35 80.0
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 2.8e-08 63.2 94 40.4
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.4e-07 60.8 153 26.8
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 2.3e-07 60.1 66 47.0
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 5.2e-07 58.9 67 44.8
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 1.5e-06 57.4 26 92.3


User provided reference genes

Program Settings