Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 0.0e+00 1660.6 882 100.0
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 0.0e+00 1147.5 902 72.7
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 5.1e-301 1037.7 903 69.0
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 8.8e-221 771.2 919 52.9
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 2.6e-220 769.6 912 53.3
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 5.7e-220 768.5 903 52.7
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 8.3e-219 764.6 907 53.4
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 5.4e-218 761.9 906 53.0
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 2.8e-214 749.6 920 50.7
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.1e-210 737.6 926 51.1
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 3.1e-210 736.1 996 49.3
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 2.7e-209 733.0 935 50.6
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 5.9e-209 731.9 922 49.8
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.3e-208 730.7 902 51.4
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 7.3e-207 724.9 893 52.1
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 7.3e-207 724.9 911 51.3
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.6e-206 723.8 922 50.1
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 2.1e-206 723.4 908 52.5
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 1.4e-205 720.7 977 50.4
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 1.8e-205 720.3 905 51.3
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 8.9e-205 718.0 924 51.4
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 8.9e-205 718.0 920 50.4
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 1.5e-204 717.2 826 54.8
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 3.4e-204 716.1 990 49.6
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 5.7e-204 715.3 897 52.6
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 7.5e-204 714.9 949 50.2
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 6.4e-203 711.8 921 50.2
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 9.2e-202 708.0 785 55.0
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.7e-201 706.4 974 49.2
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 1.5e-199 700.7 884 50.6
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.2e-196 691.0 936 48.5
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.7e-195 687.2 775 52.6
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.9e-194 683.7 531 71.6
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 2.4e-194 683.3 906 50.2
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 3.2e-194 682.9 918 49.3
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 5.4e-194 682.2 911 49.6
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 1.6e-193 680.6 742 55.9
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.0e-193 680.2 908 49.1
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 7.3e-191 671.8 1092 45.2
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 1.2e-190 671.0 941 48.6
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 4.0e-189 666.0 908 47.7
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 1.2e-188 664.5 923 48.0
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 5.8e-188 662.1 807 52.3
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 7.5e-188 661.8 926 48.2
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.3e-187 661.0 966 46.5
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 1.7e-187 660.6 919 46.8
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 1.7e-187 660.6 959 46.5
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 2.2e-187 660.2 905 49.0
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 2.9e-187 659.8 782 51.4
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 3.7e-187 659.4 928 47.8
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 2.4e-186 656.8 937 47.5
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 4.1e-186 656.0 789 51.2
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.1e-186 656.0 972 46.8
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.1e-186 655.2 964 45.7
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 7.1e-186 655.2 962 46.4
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 7.8e-185 651.7 943 46.3
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.0e-184 651.4 968 45.9
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 2.3e-184 650.2 909 46.3
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 2.3e-184 650.2 803 49.3
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.0e-184 649.8 978 46.5
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 6.6e-184 648.7 961 46.2
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 6.6e-184 648.7 975 46.3
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 3.3e-183 646.4 915 47.9
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 4.3e-183 646.0 912 48.6
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.2e-182 644.4 919 48.0
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.6e-182 644.0 911 48.6
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 2.4e-181 640.2 1038 44.6
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.1e-181 639.8 925 47.2
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 4.0e-181 639.4 937 46.6
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 5.2e-181 639.0 924 47.4
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 6.8e-181 638.6 905 48.1
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.9e-179 633.3 925 47.2
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 4.9e-179 632.5 978 46.2
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 6.4e-179 632.1 893 47.7
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.9e-178 630.6 857 48.3
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 1.0e-176 624.8 910 46.7
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.3e-176 624.4 862 47.7
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 5.1e-176 622.5 991 44.2
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.2e-174 617.8 1020 45.2
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 2.2e-171 607.1 894 45.7
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 2.2e-171 607.1 992 43.8
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 7.1e-170 602.1 817 47.0
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 7.1e-170 602.1 817 47.0
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 1.6e-169 600.9 799 47.6
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 1.6e-169 600.9 978 43.9
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 2.7e-169 600.1 915 45.9
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 3.9e-168 596.3 796 47.4
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 6.6e-168 595.5 816 48.3
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 1.1e-167 594.7 1010 44.0
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 3.3e-167 593.2 893 46.5
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 7.3e-167 592.0 912 43.9
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 1.6e-166 590.9 922 44.0
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 8.1e-166 588.6 1021 42.6
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.4e-165 587.8 821 46.0
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.4e-165 587.8 821 46.0
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 6.9e-165 585.5 940 43.1
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 1.5e-164 584.3 919 43.6
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 4.5e-164 582.8 918 43.2
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 5.8e-164 582.4 929 42.7
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 9.9e-164 581.6 911 44.0
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.2e-163 580.5 864 45.8
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.2e-163 580.5 805 47.0
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 6.4e-163 578.9 913 43.0
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.1e-162 578.2 945 42.6
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 9.3e-162 575.1 791 45.6
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.6e-161 574.3 927 42.3
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 2.7e-161 573.5 976 41.7
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 3.5e-161 573.2 938 45.2
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 3.5e-161 573.2 921 43.3
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 3.0e-160 570.1 982 41.1
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 8.7e-160 568.5 810 46.4
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 1.5e-159 567.8 900 44.0
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 5.6e-159 565.8 811 46.5
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 1.3e-158 564.7 909 42.7
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.8e-158 563.5 796 46.5
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 2.8e-158 563.5 773 45.9
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 3.7e-158 563.1 804 45.1
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 6.2e-158 562.4 800 46.1
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.4e-156 556.6 793 45.6
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 9.9e-156 555.1 901 42.3
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 9.6e-151 538.5 824 43.0
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 1.3e-150 538.1 943 41.8
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.9e-143 514.2 822 41.8
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 9.7e-143 511.9 806 43.1
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 2.0e-140 504.2 761 44.2
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 4.5e-132 476.5 953 39.6
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 7.4e-127 459.1 921 39.3
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.9e-122 444.5 918 39.5
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 1.6e-116 424.9 806 40.2
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 3.5e-116 423.7 854 39.3
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 8.8e-112 409.1 890 37.0
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 9.1e-109 399.1 808 37.4
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 9.1e-109 399.1 808 37.4
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 3.5e-100 370.5 774 35.8
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 1.1e-90 339.0 662 39.3
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 1.2e-84 318.9 368 50.8
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.2e-79 302.4 289 57.1
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 3.9e-75 287.3 348 50.6
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 1.1e-66 259.2 966 28.5
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 5.8e-63 246.9 466 38.4
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 2.9e-62 244.6 245 57.6
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 8.7e-59 233.0 379 44.1
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.9e-53 215.3 223 64.1
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 9.3e-53 213.0 390 45.4
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.4e-48 199.1 381 43.0
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 6.0e-44 183.7 184 51.6
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 2.1e-41 175.3 139 69.8
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.0e-31 142.1 164 51.8
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 7.6e-31 140.2 205 44.4
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 7.1e-29 133.7 112 67.9
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 1.3e-27 129.4 96 66.7
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.5e-26 125.2 204 42.6
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 1.6e-25 122.5 155 43.2
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.2e-23 116.3 111 55.0
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 2.2e-22 112.1 88 67.0
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.9e-22 111.7 168 44.0
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 3.2e-21 108.2 69 71.0
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 2.3e-19 102.1 89 58.4
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 8.8e-19 100.1 79 67.1
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 9.7e-18 96.7 89 56.2
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 8.2e-17 93.6 117 46.2
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 1.2e-15 89.7 57 73.7
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 2.0e-15 89.0 72 65.3
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 1.0e-14 86.7 59 69.5
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 1.3e-14 86.3 93 50.5
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.5e-13 82.0 59 76.3
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 3.2e-13 81.6 111 45.9
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 5.5e-13 80.9 89 51.7
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 1.6e-12 79.3 68 60.3
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.7e-12 78.6 141 42.6
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 1.0e-11 76.6 126 40.5
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.2e-09 68.9 92 46.7
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 1.1e-08 66.6 57 59.6
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.4e-08 66.2 44 75.0
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 5.3e-08 64.3 60 51.7
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.5e-07 62.8 115 37.4
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 1.3e-06 59.7 307 23.1
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 2.9e-06 58.5 74 47.3
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 2.9e-06 58.5 82 46.3


User provided reference genes

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