Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0209061 Helianthus annuus HOM05D000343 ORTHO05D226123 4.8e-34 147.1 68 100.0
SGA_v2.0_scaffold175G39348 Striga asiatica HOM05D000343 ORTHO05D000975 4.0e-12 74.3 38 92.1
ECA232G4854 Erigeron canadensis HOM05D000343 ORTHO05D000975 8.8e-12 73.2 40 85.0
SalBow8G0685 Salvia bowleyana HOM05D000343 ORTHO05D000975 8.8e-12 73.2 40 82.5
CAN.G1299.9 Capsicum annuum HOM05D000343 ORTHO05D000975 1.2e-11 72.8 52 67.3
Dinv31173 Davidia involucrata HOM05D000343 ORTHO05D000975 1.2e-11 72.8 52 69.2
Nitab4.5_0000443g0130 Nicotiana tabacum HOM05D000343 ORTHO05D000975 1.2e-11 72.8 52 67.3
Nitab4.5_0007772g0010 Nicotiana tabacum HOM05D000343 ORTHO05D000975 1.2e-11 72.8 52 67.3
Peaxi162Scf00199g00810 Petunia axillaris HOM05D000343 ORTHO05D000975 1.2e-11 72.8 38 86.8
FvH4_3g12710 Fragaria vesca HOM05D000343 ORTHO05D000975 1.5e-11 72.4 38 86.8
FAN21G3394 Fragaria x ananassa HOM05D000343 ORTHO05D000975 1.5e-11 72.4 38 86.8
FAN25G2128 Fragaria x ananassa HOM05D000343 ORTHO05D000975 1.5e-11 72.4 38 86.8
Lsat_1_v5_gn_8_117941 Lactuca sativa HOM05D000343 ORTHO05D000975 2.0e-11 72.0 40 82.5
TWI15G0682 Tripterygium wilfordii HOM05D000343 ORTHO05D000975 2.6e-11 71.6 38 86.8
FAN16G1108 Fragaria x ananassa HOM05D000343 ORTHO05D000975 3.4e-11 71.2 38 86.8
Lsat_1_v5_gn_5_47401 Lactuca sativa HOM05D000343 ORTHO05D000975 4.4e-11 70.9 52 67.3
Solyc02g068490.4 Solanum lycopersicum HOM05D000343 ORTHO05D000975 4.4e-11 70.9 52 65.4
Sopen02g017630 Solanum pennellii HOM05D000343 ORTHO05D000975 4.4e-11 70.9 52 65.4
SGA_v2.0_scaffold298G47705 Striga asiatica HOM05D000343 ORTHO05D000975 4.4e-11 70.9 38 86.8
vmacro11008 Vaccinium macrocarpon HOM05D000343 ORTHO05D000975 4.4e-11 70.9 54 66.7
Oeu056056.1 Olea europaea HOM05D000343 ORTHO05D000975 5.7e-11 70.5 54 68.5
SalBow7G3790 Salvia bowleyana HOM05D000343 ORTHO05D000975 5.7e-11 70.5 38 84.2
TAR626G0885 Trochodendron aralioides HOM05D000343 ORTHO05D000975 5.7e-11 70.5 54 61.1
ECA246G1037 Erigeron canadensis HOM05D000343 ORTHO05D000975 7.5e-11 70.1 42 81.0
Migut.M02001 Erythranthe guttata HOM05D000343 ORTHO05D000975 7.5e-11 70.1 40 82.5
MBI15_g43527_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D000975 7.5e-11 70.1 54 63.0
MD05G1247900 Malus domestica HOM05D000343 ORTHO05D000975 7.5e-11 70.1 38 84.2
MD10G1228800 Malus domestica HOM05D000343 ORTHO05D000975 7.5e-11 70.1 38 84.2
HanXRQChr12g0378131 Helianthus annuus HOM05D000343 ORTHO05D000975 9.8e-11 69.7 38 86.8
Lalb_Chr07g0188341 Lupinus albus HOM05D000343 ORTHO05D000975 9.8e-11 69.7 52 65.4
TAR624G1262 Trochodendron aralioides HOM05D000343 ORTHO05D000975 9.8e-11 69.7 38 81.6
MSTRG.16366 Avicennia marina HOM05D000343 ORTHO05D000975 1.3e-10 69.3 38 81.6
Manes.03G074800 Manihot esculenta HOM05D000343 ORTHO05D000975 1.3e-10 69.3 38 84.2
Nitab4.5_0000138g0130 Nicotiana tabacum HOM05D000343 ORTHO05D000975 1.3e-10 69.3 52 65.4
QL11p012985 Quercus lobata HOM05D000343 ORTHO05D000975 1.3e-10 69.3 38 81.6
RcHm_v2.0_Chr5g0020701 Rosa chinensis HOM05D000343 ORTHO05D000975 1.3e-10 69.3 38 84.2
Hund17872 Selenicereus undatus HOM05D000343 ORTHO05D000975 1.3e-10 69.3 38 81.6
Cpa.g.sc30.132 Carica papaya HOM05D000343 ORTHO05D000975 1.7e-10 68.9 38 84.2
Lalb_Chr15g0083811 Lupinus albus HOM05D000343 ORTHO05D000975 1.7e-10 68.9 38 81.6
TWI38G1614 Tripterygium wilfordii HOM05D000343 ORTHO05D000975 1.7e-10 68.9 38 84.2
VMungo1309G2201 Vigna mungo HOM05D000343 ORTHO05D000975 1.7e-10 68.9 52 65.4
CSS0014840 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D000975 2.2e-10 68.6 52 63.5
HanXRQChr15g0487371 Helianthus annuus HOM05D000343 ORTHO05D000975 2.2e-10 68.6 40 80.0
Nitab4.5_0008021g0010 Nicotiana tabacum HOM05D000343 ORTHO05D000975 2.2e-10 68.6 52 63.5
Cfa000665 Carpinus fangiana HOM05D000343 ORTHO05D000975 2.8e-10 68.2 38 84.2
Haze_06155 Corylus avellana HOM05D000343 ORTHO05D000975 2.8e-10 68.2 38 84.2
Psat1g149800 Pisum sativum HOM05D000343 ORTHO05D000975 2.8e-10 68.2 52 63.5
Prupe.4G115900 Prunus persica HOM05D000343 ORTHO05D000975 2.8e-10 68.2 40 82.5
PGSC0003DMG400009436 Solanum tuberosum HOM05D000343 ORTHO05D000975 2.8e-10 68.2 52 61.5
TPR.G31241 Trifolium pratense HOM05D000343 ORTHO05D000975 2.8e-10 68.2 52 63.5
CiPaw.10G062500 Carya illinoinensis HOM05D000343 ORTHO05D000975 3.7e-10 67.8 38 81.6
Ca_18246_v3 Cicer arietinum L. HOM05D000343 ORTHO05D000975 3.7e-10 67.8 39 76.9
ClCG01G025580 Citrullus lanatus HOM05D000343 ORTHO05D000975 3.7e-10 67.8 38 81.6
COL.COLO4_17630 Corchorus olitorius HOM05D000343 ORTHO05D000975 3.7e-10 67.8 38 81.6
Glyma.15G158300 Glycine max HOM05D000343 ORTHO05D000975 3.7e-10 67.8 52 61.5
Manes.16G060400 Manihot esculenta HOM05D000343 ORTHO05D000975 3.7e-10 67.8 38 81.6
Sabra03G0046200 Salix brachista HOM05D000343 ORTHO05D000975 3.7e-10 67.8 38 78.9
Thecc.02G005600 Theobroma cacao HOM05D000343 ORTHO05D000975 3.7e-10 67.8 38 81.6
TPR.G31847 Trifolium pratense HOM05D000343 ORTHO05D000975 3.7e-10 67.8 52 65.4
Ciclev10014141m.g Citrus clementina HOM05D000343 ORTHO05D000975 4.8e-10 67.4 38 78.9
Hma1.2p1_0088F.1_g045010 Hydrangea macrophylla HOM05D000343 ORTHO05D000975 4.8e-10 67.4 52 61.5
arahy.Tifrunner.gnm1.ann1.8Q2P9V Arachis hypogaea HOM05D000343 ORTHO05D000975 6.3e-10 67.0 52 63.5
arahy.Tifrunner.gnm1.ann1.GR9FC3 Arachis hypogaea HOM05D000343 ORTHO05D000975 6.3e-10 67.0 52 63.5
arahy.Tifrunner.gnm1.ann1.XIB6CP Arachis hypogaea HOM05D000343 ORTHO05D000975 6.3e-10 67.0 52 63.5
Glyma.09G052000 Glycine max HOM05D000343 ORTHO05D000975 6.3e-10 67.0 38 78.9
PSO541G2797 Papaver somniferum HOM05D000343 ORTHO05D000975 6.3e-10 67.0 38 76.3
PSO675G5234 Papaver somniferum HOM05D000343 ORTHO05D000975 6.3e-10 67.0 38 76.3
Phvul.009G241800 Phaseolus vulgaris HOM05D000343 ORTHO05D000975 6.3e-10 67.0 52 63.5
Sed0017485 Sechium edule HOM05D000343 ORTHO05D000975 6.3e-10 67.0 38 81.6
Glyma.05G132900 Glycine max HOM05D000343 ORTHO05D000975 8.3e-10 66.6 52 65.4
Lj6g0027980 Lotus japonicus HOM05D000343 ORTHO05D000975 8.3e-10 66.6 52 63.5
Phvul.002G190000 Phaseolus vulgaris HOM05D000343 ORTHO05D000975 8.3e-10 66.6 52 61.5
Psat7g088800 Pisum sativum HOM05D000343 ORTHO05D000975 8.3e-10 66.6 52 61.5
Potri.001G158900 Populus trichocarpa HOM05D000343 ORTHO05D000975 8.3e-10 66.6 38 76.3
Sc17g0004170 Simmondsia chinensis HOM05D000343 ORTHO05D000975 8.3e-10 66.6 38 78.9
CiPaw.09G073800 Carya illinoinensis HOM05D000343 ORTHO05D000975 1.1e-09 66.2 38 78.9
Duzib132G0104 Durio zibethinus HOM05D000343 ORTHO05D000975 1.1e-09 66.2 38 78.9
MBI02_g08254_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D000975 1.1e-09 66.2 38 76.3
Potri.003G075700 Populus trichocarpa HOM05D000343 ORTHO05D000975 1.1e-09 66.2 38 78.9
PGR004G2704 Punica granatum HOM05D000343 ORTHO05D000975 1.1e-09 66.2 38 78.9
Sed0022590 Sechium edule HOM05D000343 ORTHO05D000975 1.1e-09 66.2 38 78.9
unitig_747.g21639 Utricularia gibba HOM05D000343 ORTHO05D000975 1.1e-09 66.2 38 78.9
MSTRG.7605 Avicennia marina HOM05D000343 ORTHO05D000975 1.4e-09 65.9 38 81.6
EL10Ac7g17239 Beta vulgaris HOM05D000343 ORTHO05D000975 1.4e-09 65.9 40 75.0
Ca_00831_v3 Cicer arietinum L. HOM05D000343 ORTHO05D021358 1.4e-09 65.9 63 54.0
MELO3C007027.2 Cucumis melo HOM05D000343 ORTHO05D000975 1.4e-09 65.9 38 78.9
Medtr4g094695 Medicago truncatula HOM05D000343 ORTHO05D000975 1.4e-09 65.9 52 61.5
Sabra01G0132900 Salix brachista HOM05D000343 ORTHO05D000975 1.4e-09 65.9 38 78.9
VMungo0251G3666 Vigna mungo HOM05D000343 ORTHO05D000975 1.4e-09 65.9 52 61.5
arahy.Tifrunner.gnm1.ann1.H8X8VQ Arachis hypogaea HOM05D000343 ORTHO05D000975 1.8e-09 65.5 52 61.5
arahy.Tifrunner.gnm1.ann1.PPR7D4 Arachis hypogaea HOM05D000343 ORTHO05D000975 1.8e-09 65.5 52 61.5
Cc09_g05420 Coffea canephora HOM05D000343 ORTHO05D000975 1.8e-09 65.5 52 63.5
DCAR_003767 Daucus carota HOM05D000343 ORTHO05D000975 1.8e-09 65.5 52 65.4
Eucgr.D00027 Eucalyptus grandis HOM05D000343 ORTHO05D000975 1.8e-09 65.5 38 81.6
Glyma.08G087300 Glycine max HOM05D000343 ORTHO05D000975 1.8e-09 65.5 52 63.5
Gohir.A12G048300 Gossypium hirsutum HOM05D000343 ORTHO05D000975 1.8e-09 65.5 38 78.9
Gohir.D12G047100 Gossypium hirsutum HOM05D000343 ORTHO05D000975 1.8e-09 65.5 38 78.9
Lj4g0015974 Lotus japonicus HOM05D000343 ORTHO05D000975 1.8e-09 65.5 38 78.9
Medtr2g035840 Medicago truncatula HOM05D000343 ORTHO05D000975 1.8e-09 65.5 38 78.9
Nn7g38284 Nelumbo nucifera HOM05D000343 ORTHO05D000975 1.8e-09 65.5 54 59.3
Rhsim02G0169300 Rhododendron simsii HOM05D000343 ORTHO05D000975 1.8e-09 65.5 54 63.0
GSVIVG01012131001 Vitis vinifera HOM05D000343 ORTHO05D000975 1.8e-09 65.5 38 78.9
Atru.chr10.410 Acer truncatum HOM05D000343 ORTHO05D000975 2.4e-09 65.1 38 73.7
Ah.15g091900 Amaranthus hybridus HOM05D000343 ORTHO05D000975 3.1e-09 64.7 38 76.3
Duzib248G0157 Durio zibethinus HOM05D000343 ORTHO05D000975 3.1e-09 64.7 38 78.9
THA.LOC104811764 Tarenaya hassleriana HOM05D000343 ORTHO05D000975 3.1e-09 64.7 38 78.9
AUR62040482 Chenopodium quinoa HOM05D000343 ORTHO05D000975 4.1e-09 64.3 40 75.0
AUR62042799 Chenopodium quinoa HOM05D000343 ORTHO05D000975 4.1e-09 64.3 40 75.0
Zm00001eb389830 Zea mays HOM05D000343 ORTHO05D000975 4.1e-09 64.3 54 57.4
Aa31LG9G8380 Aethionema arabicum HOM05D000343 ORTHO05D000975 5.4e-09 63.9 38 76.3
AL8G14730 Arabidopsis lyrata HOM05D000343 ORTHO05D000975 5.4e-09 63.9 38 76.3
AT5G44790 Arabidopsis thaliana HOM05D000343 ORTHO05D000975 5.4e-09 63.9 38 76.3
Carub.0008s0346 Capsella rubella HOM05D000343 ORTHO05D000975 5.4e-09 63.9 38 76.3
CARHR178080 Cardamine hirsuta HOM05D000343 ORTHO05D000975 5.4e-09 63.9 38 76.3
Thhalv10000758m.g Eutrema salsugineum HOM05D000343 ORTHO05D000975 5.4e-09 63.9 38 76.3
Gorai.008G049700 Gossypium raimondii HOM05D000343 ORTHO05D000975 5.4e-09 63.9 38 76.3
Actinidia34690 Actinidia chinensis HOM05D000343 ORTHO05D000975 7.0e-09 63.5 38 78.9
BcaC06g31586 Brassica carinata HOM05D000343 ORTHO05D000975 7.0e-09 63.5 38 76.3
BcaC06g34504 Brassica carinata HOM05D000343 ORTHO05D000975 7.0e-09 63.5 38 76.3
A06p46880 Brassica napus HOM05D000343 ORTHO05D000975 7.0e-09 63.5 38 76.3
C07p27770 Brassica napus HOM05D000343 ORTHO05D000975 7.0e-09 63.5 38 76.3
BolC7t43309H Brassica oleracea HOM05D000343 ORTHO05D000975 7.0e-09 63.5 38 76.3
BraA06t27561Z Brassica rapa HOM05D000343 ORTHO05D000975 7.0e-09 63.5 38 76.3
CsaV3_6G052820 Cucumis sativus L. HOM05D000343 ORTHO05D000975 7.0e-09 63.5 38 76.3
Sp2g09640 Schrenkiella parvula HOM05D000343 ORTHO05D000975 7.0e-09 63.5 38 76.3
Zm00001eb207090 Zea mays HOM05D000343 ORTHO05D000975 7.0e-09 63.5 54 55.6
BcaB07g30924 Brassica carinata HOM05D000343 ORTHO05D000975 9.1e-09 63.2 38 76.3
BcaC04g21815 Brassica carinata HOM05D000343 ORTHO05D000975 9.1e-09 63.2 38 76.3
A09p21340 Brassica napus HOM05D000343 ORTHO05D000975 9.1e-09 63.2 38 76.3
C09p27180 Brassica napus HOM05D000343 ORTHO05D000975 9.1e-09 63.2 38 76.3
BolC9t55599H Brassica oleracea HOM05D000343 ORTHO05D000975 9.1e-09 63.2 38 76.3
CANSAT35G0769 Cannabis sativa HOM05D000343 ORTHO05D000975 9.1e-09 63.2 38 73.7
Aqoxy1G01417 Aquilegia oxysepala HOM05D000343 ORTHO05D000975 1.2e-08 62.8 40 72.5
Aqoxy72s002 Aquilegia oxysepala HOM05D000343 ORTHO05D000975 1.2e-08 62.8 40 72.5
DCAR_001287 Daucus carota HOM05D000343 ORTHO05D000975 1.2e-08 62.8 52 59.6
Aa31LG6G2420 Aethionema arabicum HOM05D000343 ORTHO05D000975 2.7e-08 61.6 38 73.7
Aqoxy5G02330 Aquilegia oxysepala HOM05D000343 ORTHO05D021358 2.7e-08 61.6 40 72.5
Os02g0172600 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D000975 3.5e-08 61.2 38 68.4
Os06g0665800 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D000975 3.5e-08 61.2 38 68.4
ATR0763G107 Amborella trichopoda HOM05D000343 ORTHO05D000975 4.5e-08 60.8 54 53.7
THA.LOC104806219 Tarenaya hassleriana HOM05D000343 ORTHO05D000975 4.5e-08 60.8 38 68.4
Aqoxy7G03047 Aquilegia oxysepala HOM05D000343 ORTHO05D021358 7.7e-08 60.1 40 70.0
HPP92_016425 Vanilla planifolia HOM05D000343 ORTHO05D000975 7.7e-08 60.1 38 68.4
HPP92_026364 Vanilla planifolia HOM05D000343 ORTHO05D000975 7.7e-08 60.1 38 68.4
Ca_07397_v3 Cicer arietinum L. HOM05D000343 ORTHO05D021358 1.7e-07 58.9 38 68.4
SEGI_37469 Sequoiadendron giganteum HOM05D000343 ORTHO05D000975 8.6e-07 56.6 38 60.5
CDE06G1492 Ceratophyllum demersum HOM05D000343 ORTHO05D000975 1.9e-06 55.5 38 68.4
Pp3c20_13520 Physcomitrium patens HOM05D000343 ORTHO05D000975 1.9e-06 55.5 43 58.1
Mapoly0108s0036 Marchantia polymorpha HOM05D000343 ORTHO05D000975 3.3e-06 54.7 63 47.6
AUR62010592 Chenopodium quinoa HOM05D000343 ORTHO05D000975 5.5e-06 53.9 38 60.5
AUR62017237 Chenopodium quinoa HOM05D000343 ORTHO05D000975 5.5e-06 53.9 38 60.5
MSTRG.25597 Avicennia marina HOM05D000343 ORTHO05D000975 9.5e-06 53.1 40 57.5
EL10Ac5g12785 Beta vulgaris HOM05D000343 ORTHO05D000975 9.5e-06 53.1 38 57.9


User provided reference genes

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