Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 6.7e-164 580.9 350 100.0
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 2.8e-130 469.2 350 85.7
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 8.6e-111 404.4 351 77.8
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 6.4e-106 388.3 364 72.5
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.6e-102 375.2 354 71.2
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 4.7e-101 372.1 352 72.4
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 6.2e-101 371.7 352 71.9
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 6.2e-101 371.7 352 71.9
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.4e-100 369.8 354 70.9
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 9.9e-99 364.4 311 78.5
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 4.9e-98 362.1 356 72.2
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 1.9e-97 360.1 362 69.9
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 3.2e-97 359.4 350 71.1
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 5.4e-97 358.6 354 70.9
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 5.4e-97 358.6 350 70.9
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 7.1e-97 358.2 356 69.7
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.6e-96 357.1 350 70.0
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 2.1e-96 356.7 350 70.9
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 2.7e-96 356.3 350 69.7
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 3.5e-96 355.9 350 70.3
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.3e-95 353.2 350 70.0
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.1e-95 352.1 353 69.7
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 6.6e-95 351.7 351 68.9
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 2.5e-94 349.7 347 70.0
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 7.3e-94 348.2 350 69.4
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 7.3e-94 348.2 348 68.7
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 7.3e-94 348.2 352 68.8
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 1.2e-93 347.4 346 71.4
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 3.6e-93 345.9 348 70.7
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 3.6e-93 345.9 350 70.0
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.1e-92 344.4 353 70.3
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.8e-92 343.6 347 69.5
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 1.8e-92 343.6 348 69.5
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.8e-92 343.6 335 71.6
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 3.1e-92 342.8 350 69.1
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 2.0e-91 340.1 349 67.6
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.4e-91 339.3 281 80.1
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.4e-91 339.3 349 67.9
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 3.4e-91 339.3 350 68.6
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 4.4e-91 339.0 350 68.3
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 7.6e-91 338.2 345 66.7
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.7e-90 337.0 350 68.6
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.7e-90 337.0 350 68.3
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 2.9e-90 336.3 376 63.3
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.9e-90 336.3 350 68.9
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 2.9e-90 336.3 348 67.8
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 4.9e-90 335.5 354 67.5
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 6.4e-90 335.1 355 61.1
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 6.4e-90 335.1 350 68.0
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 8.4e-90 334.7 369 67.2
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 8.4e-90 334.7 373 62.2
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 3.2e-89 332.8 350 65.1
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 7.1e-89 331.6 369 64.8
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 7.1e-89 331.6 349 67.6
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.2e-88 330.9 288 77.4
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.6e-88 330.5 350 66.0
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.0e-87 327.8 350 66.6
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 1.0e-87 327.8 357 66.1
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.7e-87 327.0 348 66.7
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 2.3e-87 326.6 359 65.5
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 3.0e-87 326.2 357 63.9
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 6.6e-87 325.1 357 65.8
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 6.6e-87 325.1 357 64.4
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 8.7e-87 324.7 353 63.2
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 5.6e-86 322.0 352 66.2
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 7.3e-86 321.6 396 48.7
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 9.6e-86 321.2 350 66.0
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 3.6e-85 319.3 351 67.8
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 6.2e-85 318.5 358 63.4
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.4e-84 317.4 290 74.5
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.8e-84 317.0 348 65.2
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 2.4e-84 316.6 350 62.9
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 6.9e-84 315.1 348 64.9
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.2e-83 314.3 338 68.3
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 2.6e-83 313.2 349 62.5
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 5.8e-83 312.0 354 65.3
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 4.9e-82 308.9 348 64.4
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 6.4e-82 308.5 361 62.6
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 3.2e-81 306.2 238 65.5
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.2e-80 304.3 345 63.2
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 4.6e-80 302.4 307 71.3
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 6.0e-80 302.0 349 60.5
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 1.1e-78 297.7 347 63.4
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 6.2e-77 292.0 350 60.0
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 6.2e-77 292.0 346 61.0
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 1.8e-76 290.4 336 63.7
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 2.4e-76 290.0 350 55.7
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.3e-76 288.9 249 59.8
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 1.9e-73 280.4 301 65.1
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 3.2e-73 279.6 313 68.7
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 5.5e-73 278.9 177 75.1
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 9.3e-73 278.1 229 61.1
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 1.3e-71 274.2 346 60.4
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 1.8e-71 273.9 344 59.9
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 5.1e-71 272.3 357 59.7
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 2.5e-70 270.0 279 69.5
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 9.6e-70 268.1 229 59.8
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 9.6e-70 268.1 164 74.4
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 2.1e-69 266.9 293 58.0
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 2.8e-69 266.5 349 56.7
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 2.8e-69 266.5 344 60.2
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 2.8e-69 266.5 316 48.7
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 6.2e-69 265.4 423 52.0
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 5.3e-68 262.3 344 59.3
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.6e-67 260.0 237 79.7
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.8e-66 256.1 343 58.3
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-64 250.8 344 57.6
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.0e-64 248.8 371 40.2
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 3.9e-63 246.1 164 72.6
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 2.5e-62 243.4 330 59.1
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 9.0e-60 235.0 345 56.2
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 9.1e-52 208.4 275 61.5
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 2.2e-50 203.8 192 55.7
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 7.2e-49 198.7 194 82.5
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 1.6e-48 197.6 194 80.9
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 7.9e-48 195.3 262 61.1
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 2.2e-45 187.2 241 66.8
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 4.5e-43 179.5 189 52.9
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 4.7e-40 169.5 162 54.3
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.3e-39 167.2 214 41.1
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 3.3e-38 163.3 294 52.7
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 5.3e-36 156.0 286 52.1
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 5.9e-35 152.5 124 61.3
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.0e-31 140.2 182 44.0
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.4e-30 136.3 188 43.1
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.3e-29 134.8 182 42.9
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 1.2e-27 128.3 160 77.5
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.5e-26 122.1 142 87.3
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 4.2e-25 119.8 83 65.1
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.3e-21 108.2 116 48.3
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.4e-20 102.8 81 63.0
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.7e-19 99.0 128 84.4
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 3.3e-17 93.6 130 43.8
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 1.6e-16 91.3 145 38.6
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 2.8e-16 90.5 134 63.4
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.8e-15 85.9 121 86.8
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.1e-09 68.6 56 60.7
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.1e-09 68.6 40 75.0
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 9.5e-09 65.5 40 70.0
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 4.0e-07 60.1 56 57.1
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 1.5e-06 58.2 50 56.0
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 1.5e-06 58.2 48 66.7
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 2.6e-06 57.4 47 57.4
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 4.4e-06 56.6 37 70.3
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 9.8e-06 55.5 58 44.8


User provided reference genes

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