Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 0.0e+00 1545.0 827 100.0
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 1.0e-98 365.5 1227 33.0
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 4.7e-75 287.0 1020 32.9
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 2.3e-61 241.5 1238 26.7
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 2.0e-33 148.7 1097 26.4
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 4.3e-28 131.0 129 54.3
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 3.4e-25 121.3 415 28.2
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 7.7e-25 120.2 114 55.3
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 1.7e-24 119.0 102 56.9
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.9e-23 115.5 175 41.7
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 2.5e-23 115.2 115 50.4
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 2.5e-23 115.2 125 47.2
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 3.6e-22 111.3 87 62.1
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 3.6e-22 111.3 101 55.4
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 7.9e-22 110.2 96 55.2
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 1.0e-21 109.8 451 26.6
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 1.8e-21 109.0 99 53.5
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 5.1e-21 107.5 87 59.8
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 6.7e-21 107.1 165 42.4
Lsat_1_v5_gn_4_112241 Lactuca sativa HOM05D005863 ORTHO05D003355 8.8e-21 106.7 241 36.5
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 3.3e-20 104.8 170 37.6
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 9.7e-20 103.2 242 33.9
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.3e-19 102.8 152 40.8
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 2.2e-19 102.1 84 57.1
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 2.8e-19 101.7 86 54.7
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.8e-19 101.7 150 38.7
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 2.8e-19 101.7 92 47.8
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 4.8e-19 100.9 101 50.5
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 6.3e-19 100.5 94 52.1
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 8.2e-19 100.1 89 53.9
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.1e-18 99.8 94 52.1
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 1.8e-18 99.0 320 28.4
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.8e-18 99.0 472 26.3
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 1.8e-18 99.0 313 31.3
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 2.4e-18 98.6 87 51.7
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 2.4e-18 98.6 96 45.8
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 3.1e-18 98.2 97 49.5
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 4.1e-18 97.8 290 31.4
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 7.0e-18 97.1 194 33.5
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.0e-17 95.5 671 24.6
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 2.0e-17 95.5 95 50.5
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 2.6e-17 95.1 260 33.8
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 3.4e-17 94.7 954 24.6
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 3.4e-17 94.7 255 32.5
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 5.9e-17 94.0 837 23.4
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 3.8e-16 91.3 739 24.6
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 5.0e-16 90.9 458 26.4
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 6.5e-16 90.5 591 24.0
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 1.4e-15 89.4 86 50.0
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 1.9e-15 89.0 204 32.8
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 1.9e-15 89.0 87 48.3
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.9e-15 89.0 276 27.9
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.2e-15 87.8 234 28.2
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 9.4e-15 86.7 91 44.0
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 1.2e-14 86.3 618 24.9
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.6e-14 85.9 82 46.3
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 2.1e-14 85.5 1072 23.9
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 2.1e-14 85.5 1053 22.9
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.7e-14 85.1 156 32.7
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 2.7e-14 85.1 81 45.7
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 2.7e-14 85.1 82 45.1
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.7e-14 85.1 89 40.4
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 6.1e-14 84.0 88 40.9
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 6.1e-14 84.0 95 42.1
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 6.1e-14 84.0 102 47.1
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 6.1e-14 84.0 302 29.8
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 8.0e-14 83.6 174 32.8
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.0e-13 83.2 88 40.9
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 1.0e-13 83.2 264 25.8
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 1.0e-13 83.2 86 46.5
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 1.4e-13 82.8 102 41.2
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 1.4e-13 82.8 89 43.8
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.8e-13 82.4 180 31.1
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 2.3e-13 82.0 91 39.6
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 3.0e-13 81.6 82 47.6
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 3.0e-13 81.6 88 40.9
Cfa009271 Carpinus fangiana HOM05D005863 ORTHO05D003355 3.9e-13 81.3 135 48.1
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 5.2e-13 80.9 159 30.8
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 8.8e-13 80.1 285 28.8
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 8.8e-13 80.1 263 28.5
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 8.8e-13 80.1 88 43.2
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.1e-12 79.7 106 43.4
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.5e-12 79.3 116 37.1
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 1.5e-12 79.3 309 28.2
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 5.7e-12 77.4 142 31.7
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 9.7e-12 76.6 93 47.3
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 9.7e-12 76.6 102 44.1
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 9.7e-12 76.6 102 44.1
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 1.3e-11 76.3 194 30.4
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.7e-11 75.9 85 40.0
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.2e-11 75.5 87 42.5
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.2e-11 75.5 979 23.2
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.2e-11 75.5 93 47.3
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.8e-11 75.1 93 46.2
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 3.7e-11 74.7 283 28.6
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 4.8e-11 74.3 734 22.9
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 8.2e-11 73.6 87 41.4
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 1.1e-10 73.2 106 36.8
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 1.4e-10 72.8 92 39.1
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 1.4e-10 72.8 103 35.0
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 1.8e-10 72.4 200 30.0
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 1.8e-10 72.4 84 42.9
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.4e-10 72.0 86 43.0
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 2.4e-10 72.0 205 30.7
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 2.4e-10 72.0 96 39.6
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 2.4e-10 72.0 177 29.4
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 2.4e-10 72.0 461 25.2
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 4.1e-10 71.2 174 29.3
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 4.1e-10 71.2 56 57.1
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 4.1e-10 71.2 158 29.1
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 5.3e-10 70.9 201 29.9
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 7.0e-10 70.5 191 28.8
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 9.1e-10 70.1 79 40.5
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 9.1e-10 70.1 98 32.7
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 9.1e-10 70.1 244 24.2
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 1.2e-09 69.7 152 26.3
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 1.6e-09 69.3 112 32.1
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 1.6e-09 69.3 73 42.5
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.6e-09 69.3 70 51.4
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.0e-09 68.9 312 25.6
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 2.0e-09 68.9 972 22.8
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 2.6e-09 68.6 73 43.8
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 2.6e-09 68.6 73 43.8
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 2.6e-09 68.6 645 24.2
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 3.5e-09 68.2 87 35.6
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 4.5e-09 67.8 88 36.4
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 5.9e-09 67.4 279 24.7
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 5.9e-09 67.4 89 33.7
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 5.9e-09 67.4 92 33.7
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 7.7e-09 67.0 80 40.0
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 7.7e-09 67.0 802 22.7
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.0e-08 66.6 102 35.3
Ca_25120_v3 Cicer arietinum L. HOM05D013281 ORTHO05D015409 1.0e-08 66.6 898 24.3
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.3e-08 66.2 274 27.0
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 1.3e-08 66.2 314 23.6
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.3e-08 66.2 225 26.2
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 1.3e-08 66.2 97 37.1
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 1.7e-08 65.9 85 37.6
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 1.7e-08 65.9 86 34.9
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 2.9e-08 65.1 745 23.4
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 5.0e-08 64.3 559 20.8
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 5.0e-08 64.3 84 35.7
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 5.0e-08 64.3 50 48.0
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 6.5e-08 63.9 558 23.8
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 6.5e-08 63.9 170 26.5
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 6.5e-08 63.9 101 34.7
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 6.5e-08 63.9 77 36.4
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 6.5e-08 63.9 122 30.3
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 6.5e-08 63.9 70 44.3
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 6.5e-08 63.9 70 44.3
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 1.5e-07 62.8 208 25.5
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 1.5e-07 62.8 92 35.9
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 1.9e-07 62.4 105 26.7
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 1.9e-07 62.4 186 26.3
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.5e-07 62.0 114 34.2
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.2e-07 61.6 332 25.3
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 4.2e-07 61.2 533 22.3
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 4.2e-07 61.2 79 36.7
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 5.5e-07 60.8 162 26.5
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 7.2e-07 60.5 186 25.8
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 7.2e-07 60.5 93 30.1
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 7.2e-07 60.5 149 26.8
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 1.2e-06 59.7 540 22.4
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 1.2e-06 59.7 83 34.9
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 1.2e-06 59.7 89 30.3
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 1.2e-06 59.7 72 38.9
CDE02G3774 Ceratophyllum demersum HOM05D005863 ORTHO05D003355 1.6e-06 59.3 310 24.5
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.6e-06 59.3 820 22.1
Hma1.2p1_0815F.1_g222840 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 1.6e-06 59.3 295 28.1
Aa31sc26G90 Aethionema arabicum HOM05D005863 ORTHO05D003355 2.1e-06 58.9 105 26.7
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 2.1e-06 58.9 540 22.4
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 2.1e-06 58.9 88 30.7
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 2.7e-06 58.5 90 30.0
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 2.7e-06 58.5 131 26.0
ECA236G3808 Erigeron canadensis HOM05D000747 ORTHO05D001683 2.7e-06 58.5 59 39.0
Aa31sc26G120 Aethionema arabicum HOM05D003496 ORTHO05D003909 3.6e-06 58.2 60 40.0
Eucgr.B03235 Eucalyptus grandis HOM05D005863 ORTHO05D003355 3.6e-06 58.2 314 27.4
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 4.7e-06 57.8 813 22.3
SGA_v2.0_scaffold140G35473 Striga asiatica HOM05D005863 ORTHO05D003355 4.7e-06 57.8 66 42.4
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 6.1e-06 57.4 79 35.4
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 6.1e-06 57.4 82 32.9
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 8.0e-06 57.0 586 21.3


User provided reference genes

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