Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 2.5e-104 382.1 189 100.0
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 1.4e-54 216.9 213 58.2
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.7e-52 209.9 203 59.1
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 4.6e-50 201.8 202 58.4
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 9.5e-48 194.1 200 55.0
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 8.1e-47 191.0 212 53.8
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 8.1e-47 191.0 182 57.1
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 1.1e-46 190.7 213 53.5
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 3.1e-46 189.1 207 55.1
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 2.0e-45 186.4 209 52.6
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 3.4e-45 185.7 213 49.8
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 5.8e-45 184.9 209 53.1
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 7.6e-45 184.5 169 61.5
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 9.9e-45 184.1 157 62.4
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.3e-44 183.7 204 53.9
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 2.2e-44 183.0 118 77.1
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 2.2e-44 183.0 154 63.0
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 2.9e-44 182.6 212 51.9
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 2.9e-44 182.6 212 51.9
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 8.4e-44 181.0 207 53.6
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 1.1e-43 180.6 209 52.6
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 1.9e-43 179.9 203 53.2
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 2.4e-43 179.5 211 51.2
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 2.4e-43 179.5 144 66.0
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 3.2e-43 179.1 134 69.4
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 3.2e-43 179.1 193 54.4
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 4.2e-43 178.7 118 73.7
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 5.4e-43 178.3 147 63.3
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 5.4e-43 178.3 147 63.3
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 5.4e-43 178.3 152 62.5
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 7.1e-43 177.9 161 61.5
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 7.1e-43 177.9 146 65.1
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 9.2e-43 177.6 224 49.6
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 1.2e-42 177.2 150 60.7
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 1.6e-42 176.8 198 52.5
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 1.6e-42 176.8 118 75.4
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 2.1e-42 176.4 149 61.1
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 2.7e-42 176.0 157 61.1
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 3.5e-42 175.6 162 59.9
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 3.5e-42 175.6 177 54.8
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 4.6e-42 175.3 111 76.6
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 6.0e-42 174.9 148 61.5
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 6.0e-42 174.9 155 60.0
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 6.0e-42 174.9 174 58.0
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 7.8e-42 174.5 120 73.3
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 7.8e-42 174.5 208 48.6
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 7.8e-42 174.5 155 61.3
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 7.8e-42 174.5 118 74.6
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 1.3e-41 173.7 111 75.7
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.3e-41 173.7 183 53.6
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 1.7e-41 173.3 118 73.7
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 1.7e-41 173.3 118 72.9
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 2.3e-41 172.9 118 72.9
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 3.0e-41 172.6 118 72.0
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 3.0e-41 172.6 118 73.7
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 3.0e-41 172.6 118 72.0
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 3.0e-41 172.6 111 75.7
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 5.1e-41 171.8 118 72.0
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 8.7e-41 171.0 111 72.1
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 1.1e-40 170.6 143 61.5
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.5e-40 170.2 118 72.0
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 3.3e-40 169.1 111 73.0
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 4.3e-40 168.7 164 57.3
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 5.6e-40 168.3 121 70.2
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 5.6e-40 168.3 149 60.4
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 5.6e-40 168.3 150 58.7
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 5.6e-40 168.3 227 48.0
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 5.6e-40 168.3 211 47.9
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 5.6e-40 168.3 211 48.8
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 5.6e-40 168.3 208 51.9
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 7.3e-40 167.9 121 70.2
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 7.3e-40 167.9 110 71.8
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 9.6e-40 167.5 111 73.0
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 9.6e-40 167.5 217 47.5
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.2e-39 167.2 150 59.3
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 2.8e-39 166.0 226 47.8
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 4.7e-39 165.2 118 70.3
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 4.7e-39 165.2 118 70.3
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 6.2e-39 164.9 111 73.9
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 1.1e-38 164.1 204 48.5
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 1.8e-38 163.3 175 53.1
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 9.0e-38 161.0 150 56.7
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 1.2e-37 160.6 139 60.4
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 1.2e-37 160.6 118 68.6
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 1.5e-37 160.2 109 69.7
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 2.0e-37 159.8 115 69.6
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 2.0e-37 159.8 109 70.6
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 2.6e-37 159.5 117 68.4
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 2.6e-37 159.5 142 58.5
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 3.4e-37 159.1 118 67.8
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 4.4e-37 158.7 118 66.9
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 5.8e-37 158.3 118 66.9
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 7.6e-37 157.9 143 58.0
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 7.6e-37 157.9 111 67.6
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 9.9e-37 157.5 118 67.8
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 1.7e-36 156.8 118 66.1
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 1.7e-36 156.8 118 66.9
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 1.7e-36 156.8 118 66.9
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 2.2e-36 156.4 118 66.1
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 2.2e-36 156.4 118 66.1
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 2.2e-36 156.4 118 66.1
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 2.9e-36 156.0 93 78.5
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 2.9e-36 156.0 141 57.4
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 3.8e-36 155.6 150 56.7
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 8.4e-36 154.5 239 42.3
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 1.1e-35 154.1 110 66.4
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 2.4e-35 152.9 116 65.5
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 2.4e-35 152.9 111 64.9
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 3.2e-35 152.5 111 67.6
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 6.0e-34 148.3 186 50.0
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 1.0e-33 147.5 139 57.6
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 2.3e-33 146.4 149 54.4
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 3.9e-33 145.6 200 48.5
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 3.9e-33 145.6 100 73.0
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 3.9e-33 145.6 149 55.0
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 1.5e-32 143.7 131 56.5
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.5e-32 143.7 108 64.8
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.3e-32 142.5 185 47.0
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 4.3e-32 142.1 285 35.4
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 9.6e-32 141.0 119 63.0
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 8.1e-31 137.9 99 69.7
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 1.4e-30 137.1 167 48.5
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 1.5e-29 133.7 93 68.8
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 9.9e-29 131.0 110 60.0
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 2.9e-28 129.4 110 58.2
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 3.8e-28 129.0 99 65.7
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 4.9e-28 128.6 124 54.8
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 6.4e-28 128.3 92 68.5
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 1.1e-27 127.5 102 62.7
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 7.1e-27 124.8 178 44.4
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 3.9e-25 119.0 198 41.4
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 3.9e-25 119.0 118 55.9
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 1.5e-24 117.1 133 48.9
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 1.5e-24 117.1 114 56.1
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 9.0e-22 107.8 114 51.8
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 2.6e-21 106.3 156 41.0
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 1.3e-20 104.0 154 45.5
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 2.2e-20 103.2 165 40.0
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 1.9e-19 100.1 146 41.1
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 2.5e-19 99.8 62 80.6
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 4.2e-19 99.0 173 38.7
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 7.1e-19 98.2 162 38.3
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 1.6e-18 97.1 125 44.0
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 2.7e-18 96.3 92 52.2
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 3.5e-18 95.9 86 58.1
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.8e-17 93.6 71 63.4
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.8e-17 93.6 71 63.4
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 6.2e-15 85.1 119 38.7
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 2.6e-13 79.7 138 36.2
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 2.8e-07 59.7 49 55.1


User provided reference genes

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