Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0207511 Helianthus annuus HOM05D005632 ORTHO05D006870 1.9e-37 158.7 80 100.0
Peaxi162Scf00128g00929 Petunia axillaris HOM05D005632 ORTHO05D006870 1.1e-24 116.3 70 85.7
DCAR_031183 Daucus carota HOM05D005632 ORTHO05D006870 9.1e-24 113.2 68 86.8
vmacro01081 Vaccinium macrocarpon HOM05D005632 ORTHO05D006870 1.3e-22 109.4 73 78.1
Peaxi162Scf00797g00115 Petunia axillaris HOM05D005632 ORTHO05D006870 1.7e-22 109.0 77 75.3
Cfa009318 Carpinus fangiana HOM05D005632 ORTHO05D006870 3.8e-22 107.8 68 79.4
EL10Ac6g13443 Beta vulgaris HOM05D005632 ORTHO05D006870 7.2e-21 103.6 65 81.5
MSTRG.522 Avicennia marina HOM05D005632 ORTHO05D006870 1.6e-20 102.4 66 78.8
MBI11_g46744_MAGBIO Magnolia biondii HOM05D005632 ORTHO05D006870 1.6e-20 102.4 67 77.6
MBI08_g36441_MAGBIO Magnolia biondii HOM05D005632 ORTHO05D006870 2.1e-20 102.1 68 76.5
Haze_12372 Corylus avellana HOM05D005632 ORTHO05D006870 3.6e-20 101.3 65 76.9
BcaB03g15184 Brassica carinata HOM05D005632 ORTHO05D006870 4.7e-20 100.9 67 74.6
AUR62005576 Chenopodium quinoa HOM05D005632 ORTHO05D006870 2.3e-19 98.6 62 80.6
Migut.E00242 Erythranthe guttata HOM05D005632 ORTHO05D006870 3.9e-19 97.8 65 76.9
Hma1.2p1_1340F.1_g276780 Hydrangea macrophylla HOM05D005632 ORTHO05D006870 3.9e-19 97.8 67 77.6
QL03p054693 Quercus lobata HOM05D005632 ORTHO05D006870 5.1e-19 97.4 65 73.8
Lj4g0009016 Lotus japonicus HOM05D005632 ORTHO05D006870 8.8e-19 96.7 73 65.8
Gohir.A01G155800 Gossypium hirsutum HOM05D005632 ORTHO05D006870 4.4e-18 94.4 64 70.3
Glyma.08G102500 Glycine max HOM05D005632 ORTHO05D006870 1.3e-17 92.8 69 68.1
Glyma.05G145700 Glycine max HOM05D005632 ORTHO05D006870 2.8e-17 91.7 69 65.2
VMungo0251G3265 Vigna mungo HOM05D005632 ORTHO05D006870 8.2e-17 90.1 68 63.2
Potri.010G056800 Populus trichocarpa HOM05D005632 ORTHO05D006870 2.4e-16 88.6 58 77.6
Rhsim12G0029700 Rhododendron simsii HOM05D005632 ORTHO05D006870 7.0e-16 87.0 66 68.2
Hund06068 Selenicereus undatus HOM05D005632 ORTHO05D006870 1.6e-15 85.9 56 75.0
HanXRQChr08g0207501 Helianthus annuus HOM05D005632 ORTHO05D006870 3.5e-15 84.7 39 100.0
CiPaw.05G114600 Carya illinoinensis HOM05D005632 ORTHO05D006870 1.3e-14 82.8 65 66.2
Dinv10990 Davidia involucrata HOM05D005632 ORTHO05D006870 1.3e-14 82.8 57 77.2
TWI36G0420 Tripterygium wilfordii HOM05D005632 ORTHO05D006870 6.5e-14 80.5 65 60.0
TWI36G0711 Tripterygium wilfordii HOM05D005632 ORTHO05D006870 6.5e-14 80.5 65 60.0
SalBow2G0748 Salvia bowleyana HOM05D005632 ORTHO05D006870 8.5e-14 80.1 47 83.0
Lalb_Chr13g0294171 Lupinus albus HOM05D005632 ORTHO05D006870 1.5e-13 79.3 68 63.2
MSTRG.13321 Avicennia marina HOM05D005632 ORTHO05D006870 5.5e-13 77.4 55 69.1
AUR62017841 Chenopodium quinoa HOM05D002431 ORTHO05D002543 4.7e-12 74.3 62 59.7
VMungo0251G0662 Vigna mungo HOM05D002431 ORTHO05D002543 1.0e-11 73.2 67 56.7
TPR.G34762 Trifolium pratense HOM05D002431 ORTHO05D002543 1.4e-11 72.8 66 56.1
Potri.008G144300 Populus trichocarpa HOM05D002431 ORTHO05D002543 1.8e-11 72.4 69 55.1
Ca_18210_v3 Cicer arietinum L. HOM05D002431 ORTHO05D002543 6.7e-11 70.5 58 62.1
Sopen05g009890 Solanum pennellii HOM05D005632 ORTHO05D006870 6.7e-11 70.5 40 87.5
PGSC0003DMG400017445 Solanum tuberosum HOM05D005632 ORTHO05D006870 6.7e-11 70.5 40 87.5
Glyma.08G090800 Glycine max HOM05D002431 ORTHO05D002543 8.8e-11 70.1 66 54.5
Phvul.002G186400 Phaseolus vulgaris HOM05D002431 ORTHO05D002543 8.8e-11 70.1 66 54.5
Psat7g086280 Pisum sativum HOM05D002431 ORTHO05D002543 8.8e-11 70.1 67 53.7
Lj4g0002360 Lotus japonicus HOM05D002431 ORTHO05D002543 1.5e-10 69.3 65 56.9
Lsat_1_v5_gn_8_149761 Lactuca sativa HOM05D005632 ORTHO05D006870 4.4e-10 67.8 35 91.4
Atru.chr11.1045 Acer truncatum HOM05D002431 ORTHO05D002543 5.7e-10 67.4 67 55.2
CSS0014265 Camellia sinensis var. sinensis HOM05D005632 ORTHO05D006870 9.7e-10 66.6 50 72.0
Sabra10G0070600 Salix brachista HOM05D002431 ORTHO05D002543 1.3e-09 66.2 61 54.1
Lalb_Chr12g0209221 Lupinus albus HOM05D002431 ORTHO05D002543 1.7e-09 65.9 67 52.2
CAN.G282.81 Capsicum annuum HOM05D002431 ORTHO05D002543 3.7e-09 64.7 68 54.4
Dinv28152 Davidia involucrata HOM05D002431 ORTHO05D002543 3.7e-09 64.7 67 52.2
Sabra08G0109300 Salix brachista HOM05D002431 ORTHO05D002543 3.7e-09 64.7 67 50.7
TAR622G0018 Trochodendron aralioides HOM05D005632 ORTHO05D006870 3.7e-09 64.7 36 86.1
Dinv12783 Davidia involucrata HOM05D002431 ORTHO05D002543 4.8e-09 64.3 71 50.7
Oeu006354.3 Olea europaea HOM05D002431 ORTHO05D002543 4.8e-09 64.3 71 53.5
AUR62024154 Chenopodium quinoa HOM05D005632 ORTHO05D006870 8.2e-09 63.5 34 85.3
BcaC03g14853 Brassica carinata HOM05D005632 ORTHO05D006870 1.1e-08 63.2 36 77.8
A02p14350 Brassica napus HOM05D005632 ORTHO05D006870 1.1e-08 63.2 36 77.8
BraA02t06496Z Brassica rapa HOM05D005632 ORTHO05D006870 1.1e-08 63.2 36 77.8
TAR374G0791 Trochodendron aralioides HOM05D005632 ORTHO05D006870 1.1e-08 63.2 36 83.3
TWI77G0990 Tripterygium wilfordii HOM05D002431 ORTHO05D002543 1.4e-08 62.8 67 50.7
MELO3C010730.2 Cucumis melo HOM05D005632 ORTHO05D006870 1.8e-08 62.4 37 81.1
QL03p041928 Quercus lobata HOM05D002431 ORTHO05D002543 1.8e-08 62.4 68 47.1
Sabra08G0136100 Salix brachista HOM05D005632 ORTHO05D006870 1.8e-08 62.4 70 50.0
TWI18G1462 Tripterygium wilfordii HOM05D005632 ORTHO05D006870 1.8e-08 62.4 38 76.3
arahy.Tifrunner.gnm1.ann1.H5LZNT Arachis hypogaea HOM05D002431 ORTHO05D002543 2.4e-08 62.0 55 58.2
arahy.Tifrunner.gnm1.ann1.PUF5Z4 Arachis hypogaea HOM05D002431 ORTHO05D002543 2.4e-08 62.0 55 58.2
BcaB05g24299 Brassica carinata HOM05D005632 ORTHO05D006870 2.4e-08 62.0 35 80.0
CiPaw.05G163000 Carya illinoinensis HOM05D002431 ORTHO05D002543 3.1e-08 61.6 67 50.7
Lalb_Chr07g0188081 Lupinus albus HOM05D002431 ORTHO05D002543 3.1e-08 61.6 56 58.9
MD13G1113300 Malus domestica HOM05D005632 ORTHO05D006870 3.1e-08 61.6 33 81.8
CDE05G0828 Ceratophyllum demersum HOM05D002431 ORTHO05D002543 4.1e-08 61.2 67 52.2
Cc11_g03240 Coffea canephora HOM05D002431 ORTHO05D002543 4.1e-08 61.2 69 49.3
DCAR_030330 Daucus carota HOM05D002431 ORTHO05D002543 4.1e-08 61.2 62 53.2
Sc11g0000640 Simmondsia chinensis HOM05D005632 ORTHO05D006870 4.1e-08 61.2 33 84.8
CDE05G1253 Ceratophyllum demersum HOM05D002431 ORTHO05D002543 5.3e-08 60.8 67 49.3
Potri.010G098000 Populus trichocarpa HOM05D002431 ORTHO05D002543 5.3e-08 60.8 59 52.5
Nn3g16536 Nelumbo nucifera HOM05D005632 ORTHO05D006870 7.0e-08 60.5 31 87.1
BolC2t08463H Brassica oleracea HOM05D005632 ORTHO05D006870 9.1e-08 60.1 36 75.0
Duzib248G1043 Durio zibethinus HOM05D005632 ORTHO05D006870 9.1e-08 60.1 33 78.8
Eucgr.J01777 Eucalyptus grandis HOM05D002431 ORTHO05D002543 9.1e-08 60.1 66 53.0
Gohir.A05G311200 Gossypium hirsutum HOM05D005632 ORTHO05D006870 9.1e-08 60.1 33 78.8
Gohir.D01G154266 Gossypium hirsutum HOM05D005632 ORTHO05D006870 9.1e-08 60.1 33 75.8
Gorai.002G191000 Gossypium raimondii HOM05D005632 ORTHO05D006870 9.1e-08 60.1 33 75.8
Lsat_1_v5_gn_4_26141 Lactuca sativa HOM05D002431 ORTHO05D002543 1.6e-07 59.3 65 47.7
CANSAT01G1127 Cannabis sativa HOM05D005632 ORTHO05D006870 2.0e-07 58.9 30 86.7
CANSAT01G1284 Cannabis sativa HOM05D005632 ORTHO05D006870 2.0e-07 58.9 30 86.7
ClCG11G000810 Citrullus lanatus HOM05D002431 ORTHO05D002543 2.0e-07 58.9 60 53.3
HanXRQChr12g0385931 Helianthus annuus HOM05D005632 ORTHO05D006870 2.0e-07 58.9 35 80.0
Actinidia30669 Actinidia chinensis HOM05D005632 ORTHO05D006870 2.7e-07 58.5 33 87.9
Sed0026720 Sechium edule HOM05D005632 ORTHO05D006870 3.5e-07 58.2 29 86.2
Atru.chr11.2274 Acer truncatum HOM05D005632 ORTHO05D006870 4.5e-07 57.8 30 83.3
Nitab4.5_0000240g0120 Nicotiana tabacum HOM05D005632 ORTHO05D006870 4.5e-07 57.8 31 90.3
Thecc.02G274700 Theobroma cacao HOM05D005632 ORTHO05D006870 4.5e-07 57.8 31 80.6
CAN.G947.28 Capsicum annuum HOM05D005632 ORTHO05D006870 5.9e-07 57.4 32 87.5
Lj6C822T14 Lonicera japonica HOM05D005632 ORTHO05D006870 5.9e-07 57.4 32 87.5
Manes.10G068300 Manihot esculenta HOM05D002431 ORTHO05D002543 7.7e-07 57.0 66 50.0
Medtr8g080180 Medicago truncatula HOM05D005632 ORTHO05D006870 7.7e-07 57.0 41 61.0
Cpa.g.sc43.34 Carica papaya HOM05D005632 ORTHO05D006870 1.3e-06 56.2 33 78.8
MD16G1112600 Malus domestica HOM05D005632 ORTHO05D006870 1.3e-06 56.2 29 82.8
Manes.13G016200 Manihot esculenta HOM05D005632 ORTHO05D006870 1.3e-06 56.2 29 82.8
Prupe.1G232800 Prunus persica HOM05D005632 ORTHO05D006870 1.3e-06 56.2 29 82.8
SGA_v2.0_scaffold223G42825 Striga asiatica HOM05D002431 ORTHO05D002543 1.3e-06 56.2 63 49.2
CsaV3_2G025340 Cucumis sativus L. HOM05D005632 ORTHO05D006870 1.7e-06 55.8 33 81.8
Gohir.D05G312000 Gossypium hirsutum HOM05D005632 ORTHO05D006870 1.7e-06 55.8 30 80.0
Gorai.009G333200 Gossypium raimondii HOM05D005632 ORTHO05D006870 1.7e-06 55.8 30 80.0
Peaxi162Scf00097g01811 Petunia axillaris HOM05D002431 ORTHO05D002543 1.7e-06 55.8 61 54.1
FvH4_4g24210 Fragaria vesca HOM05D005632 ORTHO05D006870 2.2e-06 55.5 29 86.2
FAN07G2757 Fragaria x ananassa HOM05D005632 ORTHO05D006870 2.2e-06 55.5 29 86.2
FAN12G4104 Fragaria x ananassa HOM05D005632 ORTHO05D006870 2.2e-06 55.5 29 86.2
FAN17G2842 Fragaria x ananassa HOM05D005632 ORTHO05D006870 2.2e-06 55.5 29 86.2
FAN22G2239 Fragaria x ananassa HOM05D005632 ORTHO05D006870 2.2e-06 55.5 29 86.2
RcHm_v2.0_Chr4g0431051 Rosa chinensis HOM05D005632 ORTHO05D006870 2.2e-06 55.5 29 86.2
TAR382G0001 Trochodendron aralioides HOM05D002431 ORTHO05D002543 2.2e-06 55.5 66 50.0
HPP92_001245 Vanilla planifolia HOM05D005632 ORTHO05D006870 2.2e-06 55.5 31 83.9
HPP92_001261 Vanilla planifolia HOM05D005632 ORTHO05D006870 2.2e-06 55.5 31 83.9
A07p34120 Brassica napus HOM05D005632 ORTHO05D006870 2.9e-06 55.1 29 82.8
C06p42650 Brassica napus HOM05D005632 ORTHO05D006870 2.9e-06 55.1 29 82.8
BolC6t39174H Brassica oleracea HOM05D005632 ORTHO05D006870 2.9e-06 55.1 29 82.8
BraA07t31038Z Brassica rapa HOM05D005632 ORTHO05D006870 2.9e-06 55.1 29 82.8
Cc11_g16640 Coffea canephora HOM05D005632 ORTHO05D006870 2.9e-06 55.1 30 86.7
Thhalv10018804m.g Eutrema salsugineum HOM05D005632 ORTHO05D006870 2.9e-06 55.1 29 82.8
Aa31sc48G70 Aethionema arabicum HOM05D005632 ORTHO05D006870 3.8e-06 54.7 28 85.7
Dinv14805 Davidia involucrata HOM05D005632 ORTHO05D006870 3.8e-06 54.7 30 86.7
Gohir.A01G145800 Gossypium hirsutum HOM05D002431 ORTHO05D002543 3.8e-06 54.7 67 47.8
Oeu020312.1 Olea europaea HOM05D005632 ORTHO05D006870 3.8e-06 54.7 30 86.7
COL.COLO4_12811 Corchorus olitorius HOM05D005632 ORTHO05D006870 5.0e-06 54.3 30 76.7
CsaV3_5G012590 Cucumis sativus L. HOM05D002431 ORTHO05D002543 5.0e-06 54.3 57 50.9
CsaV3_5G012800 Cucumis sativus L. HOM05D002431 ORTHO05D002543 5.0e-06 54.3 57 50.9
Duzib251G0024 Durio zibethinus HOM05D005632 ORTHO05D006870 5.0e-06 54.3 29 79.3
Sp5g22610 Schrenkiella parvula HOM05D005632 ORTHO05D006870 5.0e-06 54.3 31 74.2
Sed0013249 Sechium edule HOM05D002431 ORTHO05D002543 6.5e-06 53.9 57 50.9
Sed0020525 Sechium edule HOM05D005632 ORTHO05D006870 6.5e-06 53.9 36 72.2
ECA233G1608 Erigeron canadensis HOM05D000084 ORTHO05D002602 8.5e-06 53.5 31 93.5
THA.LOC104824101 Tarenaya hassleriana HOM05D002431 ORTHO05D002543 8.5e-06 53.5 58 50.0
GSVIVG01010242001 Vitis vinifera HOM05D002431 ORTHO05D002543 8.5e-06 53.5 71 42.3


User provided reference genes

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