Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0207431 Helianthus annuus HOM05D000424 ORTHO05D008586 3.5e-76 288.1 136 100.0
CSS0001753 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D000102 1.9e-50 202.6 136 67.6
CSS0034881 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D000102 1.9e-50 202.6 136 67.6
HanXRQChr08g0207401 Helianthus annuus HOM05D000424 ORTHO05D008586 3.3e-50 201.8 97 96.9
HanXRQChr08g0207451 Helianthus annuus HOM05D000424 ORTHO05D008586 3.3e-50 201.8 97 96.9
Lsat_1_v5_gn_8_151840 Lactuca sativa HOM05D000424 ORTHO05D008586 5.6e-50 201.1 136 69.1
ECA233G0630 Erigeron canadensis HOM05D000424 ORTHO05D008586 1.1e-48 196.8 120 77.5
Dinv10995 Davidia involucrata HOM05D000424 ORTHO05D008586 5.3e-48 194.5 136 64.0
Nn3g18338 Nelumbo nucifera HOM05D000424 ORTHO05D008586 2.6e-47 192.2 134 62.7
Hma1.2p1_0856F.1_g229090 Hydrangea macrophylla HOM05D000424 ORTHO05D008586 2.9e-46 188.7 135 59.3
CANSAT01G2133 Cannabis sativa HOM05D000424 ORTHO05D008586 6.4e-46 187.6 132 61.4
Haze_12363 Corylus avellana HOM05D000424 ORTHO05D008586 1.0e-43 180.3 127 62.2
MD17G1227800 Malus domestica HOM05D000424 ORTHO05D008586 1.0e-43 180.3 132 59.8
MD17G1228100 Malus domestica HOM05D000424 ORTHO05D008586 1.0e-43 180.3 132 59.8
Ciclev10031257m.g Citrus clementina HOM05D000424 ORTHO05D008586 2.3e-43 179.1 132 59.8
Prupe.3G105000 Prunus persica HOM05D000424 ORTHO05D008586 2.3e-43 179.1 132 59.8
FAN13G0831 Fragaria x ananassa HOM05D000424 ORTHO05D008586 5.1e-43 177.9 132 57.6
FAN04G2222 Fragaria x ananassa HOM05D000424 ORTHO05D008586 6.7e-43 177.6 132 57.6
FAN12G1611 Fragaria x ananassa HOM05D000424 ORTHO05D008586 6.7e-43 177.6 132 57.6
MSTRG.7975 Avicennia marina HOM05D000424 ORTHO05D008586 1.5e-42 176.4 136 58.1
FvH4_5g29890 Fragaria vesca HOM05D000424 ORTHO05D008586 1.5e-42 176.4 133 57.1
Nitab4.5_0001898g0020 Nicotiana tabacum HOM05D000424 ORTHO05D008586 1.5e-42 176.4 136 56.6
FvH4_4g36630 Fragaria vesca HOM05D000424 ORTHO05D008586 1.9e-42 176.0 132 57.6
Lalb_Chr12g0210351 Lupinus albus HOM05D000424 ORTHO05D008586 1.9e-42 176.0 132 56.8
PGR119G1668 Punica granatum HOM05D000424 ORTHO05D008586 2.5e-42 175.6 135 57.0
TAR374G1548 Trochodendron aralioides HOM05D000424 ORTHO05D008586 4.3e-42 174.9 125 60.8
RcHm_v2.0_Chr7g0223501 Rosa chinensis HOM05D000424 ORTHO05D008586 1.3e-41 173.3 132 56.8
CAN.G1038.8 Capsicum annuum HOM05D000424 ORTHO05D008586 2.8e-41 172.2 135 54.1
Haze_12359 Corylus avellana HOM05D000424 ORTHO05D008586 6.2e-41 171.0 127 59.8
Migut.K00691 Erythranthe guttata HOM05D000424 ORTHO05D008586 6.2e-41 171.0 136 57.4
Sc11g0000690 Simmondsia chinensis HOM05D000424 ORTHO05D008586 8.1e-41 170.6 134 56.7
Sopen05g009570 Solanum pennellii HOM05D000424 ORTHO05D008586 2.4e-40 169.1 136 53.7
Rhsim12G0106100 Rhododendron simsii HOM05D000424 ORTHO05D008586 3.1e-40 168.7 136 60.3
Cfa009309 Carpinus fangiana HOM05D000424 ORTHO05D008586 4.0e-40 168.3 126 59.5
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 6.9e-40 167.5 135 54.8
PGSC0003DMG400017435 Solanum tuberosum HOM05D000424 ORTHO05D008586 6.9e-40 167.5 136 54.4
Thecc.02G273600 Theobroma cacao HOM05D000424 ORTHO05D008586 6.9e-40 167.5 127 55.1
Aqoxy5G03537 Aquilegia oxysepala HOM05D000424 ORTHO05D008586 9.0e-40 167.2 134 56.0
Solyc05g014490.3 Solanum lycopersicum HOM05D000424 ORTHO05D008586 2.6e-39 165.6 136 54.4
Sed0028237 Sechium edule HOM05D000424 ORTHO05D008586 3.4e-39 165.2 132 55.3
VMungo1215G2887 Vigna mungo HOM05D000879 ORTHO05D002043 3.4e-39 165.2 132 51.5
Cpa.g.sc43.5 Carica papaya HOM05D000424 ORTHO05D008586 5.8e-39 164.5 130 56.9
Oeu020314.1 Olea europaea HOM05D000424 ORTHO05D008586 1.7e-38 162.9 136 53.7
Medtr7g029515 Medicago truncatula HOM05D000424 ORTHO05D008586 2.2e-38 162.5 132 52.3
COL.COLO4_23614 Corchorus olitorius HOM05D000424 ORTHO05D008586 3.8e-38 161.8 129 51.9
Lj6P821T28 Lonicera japonica HOM05D000424 ORTHO05D008586 3.8e-38 161.8 119 63.9
Lj5g0012330 Lotus japonicus HOM05D000424 ORTHO05D008586 3.8e-38 161.8 132 53.0
arahy.Tifrunner.gnm1.ann1.QBYX8U Arachis hypogaea HOM05D000424 ORTHO05D008586 4.9e-38 161.4 135 49.6
Lj6g0011408 Lotus japonicus HOM05D000424 ORTHO05D008586 6.4e-38 161.0 132 53.0
arahy.Tifrunner.gnm1.ann1.5FY1X2 Arachis hypogaea HOM05D000424 ORTHO05D008586 8.4e-38 160.6 132 50.0
TPR.G38275 Trifolium pratense HOM05D000424 ORTHO05D008586 1.1e-37 160.2 130 53.1
CDE06G1162 Ceratophyllum demersum HOM05D000424 ORTHO05D008586 1.4e-37 159.8 135 51.9
SGA_v2.0_scaffold34G13606 Striga asiatica HOM05D000424 ORTHO05D008586 1.4e-37 159.8 134 55.2
EL10Ac6g13428 Beta vulgaris HOM05D000424 ORTHO05D008586 3.2e-37 158.7 135 52.6
Phvul.001G095200 Phaseolus vulgaris HOM05D000424 ORTHO05D008586 3.2e-37 158.7 132 50.8
SalBow2G1939 Salvia bowleyana HOM05D000424 ORTHO05D008586 5.5e-37 157.9 134 58.2
Medtr1g056160 Medicago truncatula HOM05D000424 ORTHO05D008586 7.1e-37 157.5 132 52.3
Cc02_g24080 Coffea canephora HOM05D000424 ORTHO05D008586 2.7e-36 155.6 136 52.9
THA.LOC104805256 Tarenaya hassleriana HOM05D000424 ORTHO05D008586 4.6e-36 154.8 131 54.2
Atru.chr11.2237 Acer truncatum HOM05D000424 ORTHO05D008586 7.9e-36 154.1 132 53.8
Carub.0003s0338 Capsella rubella HOM05D000424 ORTHO05D008586 7.9e-36 154.1 133 53.4
AT3G04130 Arabidopsis thaliana HOM05D000424 ORTHO05D008586 1.3e-35 153.3 133 52.6
AL3G14040 Arabidopsis lyrata HOM05D000424 ORTHO05D008586 2.3e-35 152.5 133 52.6
AUR62024165 Chenopodium quinoa HOM05D000424 ORTHO05D008586 3.0e-35 152.1 135 51.1
Sp3g03100 Schrenkiella parvula HOM05D000424 ORTHO05D008586 6.7e-35 151.0 133 51.1
Gohir.D02G152900 Gossypium hirsutum HOM05D000424 ORTHO05D008586 8.7e-35 150.6 119 54.6
Gorai.005G172000 Gossypium raimondii HOM05D000424 ORTHO05D008586 8.7e-35 150.6 121 53.7
Thhalv10020548m.g Eutrema salsugineum HOM05D000424 ORTHO05D008586 4.3e-34 148.3 133 49.6
Aa31LG5G14670 Aethionema arabicum HOM05D000424 ORTHO05D008586 5.6e-34 147.9 133 51.1
CARHR078260 Cardamine hirsuta HOM05D000424 ORTHO05D008586 7.4e-34 147.5 133 50.4
Gohir.A03G129100 Gossypium hirsutum HOM05D000424 ORTHO05D008586 7.4e-34 147.5 119 53.8
BraA05t23064Z Brassica rapa HOM05D000424 ORTHO05D008586 9.6e-34 147.1 133 48.9
A05p43220 Brassica napus HOM05D000424 ORTHO05D008586 1.6e-33 146.4 133 48.1
PSO782G4466 Papaver somniferum HOM05D000424 ORTHO05D008586 2.1e-33 146.0 135 52.6
Medtr7g005780 Medicago truncatula HOM05D000424 ORTHO05D008586 2.8e-33 145.6 112 55.4
BcaC05g30215 Brassica carinata HOM05D000424 ORTHO05D008586 8.2e-33 144.1 133 48.1
BolC5t34951H Brassica oleracea HOM05D000424 ORTHO05D008586 3.1e-32 142.1 133 46.6
Ah.03g133830 Amaranthus hybridus HOM05D000424 ORTHO05D008586 5.3e-32 141.4 133 47.4
Potri.008G179201 Populus trichocarpa HOM05D000424 ORTHO05D008586 2.6e-31 139.0 132 50.0
BcaC05g29964 Brassica carinata HOM05D000424 ORTHO05D008586 4.5e-31 138.3 133 45.9
C05p62960 Brassica napus HOM05D000424 ORTHO05D008586 4.5e-31 138.3 133 45.9
CiPaw.05G116100 Carya illinoinensis HOM05D000424 ORTHO05D008586 2.9e-30 135.6 112 53.6
Glyma.16G058400 Glycine max HOM05D000424 ORTHO05D008586 4.9e-30 134.8 97 59.8
Eucgr.H04672 Eucalyptus grandis HOM05D000424 ORTHO05D008586 6.5e-30 134.4 97 59.8
Os02g0601600 Oryza sativa ssp. japonica HOM05D000424 ORTHO05D008586 6.5e-30 134.4 130 50.0
DCAR_013708 Daucus carota HOM05D000424 ORTHO05D008586 7.1e-29 131.0 99 60.6
DCAR_024082 Daucus carota HOM05D000424 ORTHO05D008586 7.1e-29 131.0 99 60.6
Actinidia25755 Actinidia chinensis HOM05D000424 ORTHO05D008586 9.3e-29 130.6 86 68.6
HPP92_008081 Vanilla planifolia HOM05D000424 ORTHO05D008586 2.1e-28 129.4 133 46.6
Manes.13G015300 Manihot esculenta HOM05D000424 ORTHO05D008586 7.9e-28 127.5 97 58.8
QL03p055001 Quercus lobata HOM05D000424 ORTHO05D008586 1.0e-27 127.1 86 65.1
Psat7g264040 Pisum sativum HOM05D000424 ORTHO05D008586 3.3e-26 122.1 91 56.0
Zm00001eb246390 Zea mays HOM05D000424 ORTHO05D008586 2.4e-24 115.9 134 39.6
MBI07_g21926_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D008586 1.7e-22 109.8 135 39.3
Peaxi162Scf00128g00087 Petunia axillaris HOM05D000424 ORTHO05D008586 1.4e-21 106.7 77 58.4
Aa31LG1G15500 Aethionema arabicum HOM05D000424 ORTHO05D000355 3.0e-19 99.0 116 45.7
Eucgr.J02931 Eucalyptus grandis HOM05D000424 ORTHO05D008586 3.0e-19 99.0 73 56.2
AT3G22670 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 2.5e-18 95.9 112 46.4
BraA03t13435Z Brassica rapa HOM05D000424 ORTHO05D000355 3.3e-18 95.5 118 44.1
Carub.0003s2283 Capsella rubella HOM05D000424 ORTHO05D000355 4.3e-18 95.1 117 44.4
FvH4_4g00721 Fragaria vesca HOM05D000424 ORTHO05D000355 4.3e-18 95.1 133 39.1
AL3G36970 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 5.7e-18 94.7 117 44.4
Sp3g20430 Schrenkiella parvula HOM05D000424 ORTHO05D000355 5.7e-18 94.7 118 44.9
C03p52660 Brassica napus HOM05D000424 ORTHO05D000355 9.7e-18 94.0 120 43.3
BcaB04g19212 Brassica carinata HOM05D000424 ORTHO05D000355 1.3e-17 93.6 112 45.5
A03p42890 Brassica napus HOM05D000424 ORTHO05D008586 1.7e-17 93.2 116 44.8
BolC3t17534H Brassica oleracea HOM05D000424 ORTHO05D000355 3.7e-17 92.0 119 42.9
BcaC01g03431 Brassica carinata HOM05D000424 ORTHO05D000355 4.8e-17 91.7 122 42.6
A03p42910 Brassica napus HOM05D000424 ORTHO05D000355 6.3e-17 91.3 122 42.6
BcaB03g14655 Brassica carinata HOM05D000424 ORTHO05D000355 8.2e-17 90.9 112 43.8
Glyma.19G088850 Glycine max HOM05D000424 ORTHO05D008586 1.8e-16 89.7 82 48.8
CsaV3_5G030530 Cucumis sativus L. HOM05D000424 ORTHO05D008586 2.2e-14 82.8 97 44.3
MBI16_g31775_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D008586 8.5e-14 80.9 59 57.6
GSVIVG01010329001 Vitis vinifera HOM05D000424 ORTHO05D008586 3.2e-13 79.0 56 60.7
TWI09G0390 Tripterygium wilfordii HOM05D000424 ORTHO05D008586 1.2e-12 77.0 133 32.3
Nitab4.5_0000085g0350 Nicotiana tabacum HOM05D000424 ORTHO05D008586 4.7e-12 75.1 133 36.8
TWI79G0596 Tripterygium wilfordii HOM05D007173 ORTHO05D009151 4.1e-08 62.0 104 36.5
Cfa007278 Carpinus fangiana HOM05D007173 ORTHO05D009151 1.2e-07 60.5 102 35.3
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 2.0e-07 59.7 102 34.3
Peaxi162Scf00231g00042 Petunia axillaris HOM05D007173 ORTHO05D009151 3.4e-07 58.9 102 35.3
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 5.9e-07 58.2 102 35.3
BcaC06g35432 Brassica carinata HOM05D007173 ORTHO05D009151 7.7e-07 57.8 102 34.3
C07p16260 Brassica napus HOM05D007173 ORTHO05D009151 7.7e-07 57.8 102 34.3
BolC7t42120H Brassica oleracea HOM05D007173 ORTHO05D009151 7.7e-07 57.8 102 34.3
Cpa.g.sc332.2 Carica papaya HOM05D007173 ORTHO05D009589 7.7e-07 57.8 116 29.3
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 7.7e-07 57.8 102 35.3
MSTRG.18528 Avicennia marina HOM05D007173 ORTHO05D009151 1.0e-06 57.4 97 37.1
BcaB04g20505 Brassica carinata HOM05D000424 ORTHO05D039391 1.0e-06 57.4 116 31.9
Ca_27827_v3 Cicer arietinum L. HOM05D000424 ORTHO05D008586 1.0e-06 57.4 52 48.1
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 1.3e-06 57.0 104 33.7
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 1.3e-06 57.0 102 34.3
ATR0827G081 Amborella trichopoda HOM05D007173 ORTHO05D009151 1.7e-06 56.6 105 35.2
DCAR_028899 Daucus carota HOM05D007559 ORTHO05D009642 2.9e-06 55.8 126 27.8
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 3.8e-06 55.5 102 34.3
Nitab4.5_0000923g0180 Nicotiana tabacum HOM05D007173 ORTHO05D009151 3.8e-06 55.5 102 32.4
PSO017G0572 Papaver somniferum HOM05D007173 ORTHO05D009151 3.8e-06 55.5 128 26.6
Thecc.10G126300 Theobroma cacao HOM05D007173 ORTHO05D009151 5.0e-06 55.1 105 34.3
ClCG02G005230 Citrullus lanatus HOM05D000001 ORTHO05D009502 6.5e-06 54.7 94 34.0
Atru.chr4.863 Acer truncatum HOM05D007173 ORTHO05D009151 8.5e-06 54.3 102 33.3
Nn6g33908 Nelumbo nucifera HOM05D007173 ORTHO05D009151 8.5e-06 54.3 102 32.4
Potri.005G066700 Populus trichocarpa HOM05D007173 ORTHO05D009151 8.5e-06 54.3 104 32.7
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 8.5e-06 54.3 90 35.6


User provided reference genes

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