Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0207321 Helianthus annuus HOM05D001304 ORTHO05D008890 1.9e-109 399.4 238 100.0
ECA233G5962 Erigeron canadensis HOM05D000468 ORTHO05D000548 5.7e-82 308.1 211 78.2
Lsat_1_v5_gn_8_150960 Lactuca sativa HOM05D001304 ORTHO05D008890 3.2e-77 292.4 243 67.9
Eucgr.H04690 Eucalyptus grandis HOM05D001304 ORTHO05D008890 1.7e-73 280.0 242 63.6
PGR119G0865 Punica granatum HOM05D001304 ORTHO05D008890 4.1e-72 275.4 228 63.6
Manes.12G017100 Manihot esculenta HOM05D001304 ORTHO05D008890 2.0e-71 273.1 239 62.8
Actinidia15135 Actinidia chinensis HOM05D001304 ORTHO05D008890 3.5e-71 272.3 178 76.4
Dinv11009 Davidia involucrata HOM05D001304 ORTHO05D008890 2.3e-70 269.6 179 77.1
Ciclev10032669m.g Citrus clementina HOM05D001304 ORTHO05D008890 2.9e-70 269.2 176 77.3
Cc11_g16390 Coffea canephora HOM05D001304 ORTHO05D008890 2.9e-70 269.2 241 62.7
CARHR060290 Cardamine hirsuta HOM05D001304 ORTHO05D008890 5.0e-70 268.5 178 74.2
TWI36G0586 Tripterygium wilfordii HOM05D001304 ORTHO05D008890 5.0e-70 268.5 239 62.3
CiPaw.05G174500 Carya illinoinensis HOM05D001304 ORTHO05D008890 8.6e-70 267.7 179 76.5
VMungo1383G0240 Vigna mungo HOM05D001304 ORTHO05D008890 1.9e-69 266.5 240 63.3
COL.COLO4_23565 Corchorus olitorius HOM05D001304 ORTHO05D008890 5.5e-69 265.0 236 62.3
TAR622G1249 Trochodendron aralioides HOM05D001304 ORTHO05D008890 5.5e-69 265.0 238 60.9
BcaB03g15175 Brassica carinata HOM05D001304 ORTHO05D008890 9.5e-69 264.2 178 74.2
BcaC08g46045 Brassica carinata HOM05D001304 ORTHO05D008890 9.5e-69 264.2 163 78.5
C06p38480 Brassica napus HOM05D001304 ORTHO05D008890 9.5e-69 264.2 163 78.5
Phvul.001G258300 Phaseolus vulgaris HOM05D001304 ORTHO05D008890 9.5e-69 264.2 179 76.0
AL2G26400 Arabidopsis lyrata HOM05D001304 ORTHO05D008890 1.6e-68 263.5 172 75.0
AT1G67700 Arabidopsis thaliana HOM05D001304 ORTHO05D008890 1.6e-68 263.5 172 75.0
BcaC08g46187 Brassica carinata HOM05D001304 ORTHO05D008890 2.8e-68 262.7 178 73.6
Potri.010G053600 Populus trichocarpa HOM05D001304 ORTHO05D008890 2.8e-68 262.7 173 76.9
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 3.6e-68 262.3 172 74.4
Thhalv10019020m.g Eutrema salsugineum HOM05D001304 ORTHO05D008890 3.6e-68 262.3 178 74.2
Glyma.11G246700 Glycine max HOM05D001304 ORTHO05D008890 3.6e-68 262.3 244 63.5
MSTRG.7966 Avicennia marina HOM05D001304 ORTHO05D008890 4.7e-68 261.9 225 63.6
Sabra10G0017000 Salix brachista HOM05D001304 ORTHO05D008890 4.7e-68 261.9 227 63.0
PSO063G7645 Papaver somniferum HOM05D001304 ORTHO05D008890 6.1e-68 261.5 180 73.9
PSO782G0777 Papaver somniferum HOM05D001304 ORTHO05D008890 6.1e-68 261.5 180 73.9
A07p32450 Brassica napus HOM05D001304 ORTHO05D008890 8.0e-68 261.2 169 76.3
BraA07t30869Z Brassica rapa HOM05D001304 ORTHO05D008890 8.0e-68 261.2 169 76.3
Carub.0002s1413 Capsella rubella HOM05D001304 ORTHO05D008890 8.0e-68 261.2 172 73.8
Nitab4.5_0000041g0390 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.8e-67 260.0 230 58.7
Sp5g22690 Schrenkiella parvula HOM05D001304 ORTHO05D008890 1.8e-67 260.0 174 74.1
CsaV3_2G025190 Cucumis sativus L. HOM05D001304 ORTHO05D008890 2.3e-67 259.6 240 61.7
FAN07G1515 Fragaria x ananassa HOM05D001304 ORTHO05D008890 3.0e-67 259.2 237 60.8
Haze_12318 Corylus avellana HOM05D001304 ORTHO05D008890 5.2e-67 258.5 238 59.2
Peaxi162Scf00128g00729 Petunia axillaris HOM05D001304 ORTHO05D008890 6.8e-67 258.1 234 60.3
RcHm_v2.0_Chr4g0431911 Rosa chinensis HOM05D001304 ORTHO05D008890 6.8e-67 258.1 238 59.7
Aa31LG4G12100 Aethionema arabicum HOM05D001304 ORTHO05D008890 8.9e-67 257.7 236 59.3
PGSC0003DMG400017453 Solanum tuberosum HOM05D001304 ORTHO05D008890 8.9e-67 257.7 178 73.0
Aqoxy5G03572 Aquilegia oxysepala HOM05D001304 ORTHO05D008890 1.5e-66 256.9 240 58.3
FvH4_4g24830 Fragaria vesca HOM05D001304 ORTHO05D008890 1.5e-66 256.9 237 60.3
FAN12G0763 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.5e-66 256.9 237 60.3
FAN17G2678 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.5e-66 256.9 237 60.3
FAN22G1346 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.5e-66 256.9 237 60.3
THA.LOC104825532 Tarenaya hassleriana HOM05D001304 ORTHO05D008890 1.5e-66 256.9 175 74.9
Oeu020321.1 Olea europaea HOM05D001304 ORTHO05D008890 2.0e-66 256.5 234 62.0
Gohir.D04G181000 Gossypium hirsutum HOM05D001304 ORTHO05D008890 2.6e-66 256.1 237 59.1
Prupe.1G237600 Prunus persica HOM05D001304 ORTHO05D008890 2.6e-66 256.1 241 59.3
arahy.Tifrunner.gnm1.ann1.VHC2JK Arachis hypogaea HOM05D001304 ORTHO05D008890 3.4e-66 255.8 165 77.0
Sopen05g009420 Solanum pennellii HOM05D001304 ORTHO05D008890 4.4e-66 255.4 178 71.9
Sed0004969 Sechium edule HOM05D001304 ORTHO05D008890 5.7e-66 255.0 240 62.9
unitig_8.g2912 Utricularia gibba HOM05D000468 ORTHO05D008890 5.7e-66 255.0 233 60.1
Solyc05g014310.3 Solanum lycopersicum HOM05D001304 ORTHO05D008890 7.5e-66 254.6 172 72.1
Lj6C819T3 Lonicera japonica HOM05D001304 ORTHO05D008890 1.3e-65 253.8 174 75.3
SGA_v2.0_scaffold484G52361 Striga asiatica HOM05D001304 ORTHO05D008890 1.3e-65 253.8 232 60.3
Cfa009288 Carpinus fangiana HOM05D001304 ORTHO05D008890 6.3e-65 251.5 238 58.4
Ca_16494_v3 Cicer arietinum L. HOM05D001304 ORTHO05D008890 8.3e-65 251.1 160 78.1
MD13G1108600 Malus domestica HOM05D001304 ORTHO05D008890 1.1e-64 250.8 241 58.5
Migut.K00680 Erythranthe guttata HOM05D001304 ORTHO05D008890 1.4e-64 250.4 247 57.9
CANSAT01G0179 Cannabis sativa HOM05D001304 ORTHO05D008890 4.1e-64 248.8 178 71.3
SalBow2G0118 Salvia bowleyana HOM05D001304 ORTHO05D008890 5.4e-64 248.4 229 59.0
CDE02G1129 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 7.0e-64 248.1 229 57.6
Duzib251G0230 Durio zibethinus HOM05D001304 ORTHO05D008890 1.2e-63 247.3 165 76.4
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 1.6e-63 246.9 201 63.7
AUR62005553 Chenopodium quinoa HOM05D001304 ORTHO05D008890 2.7e-63 246.1 233 59.2
Thecc.02G270700 Theobroma cacao HOM05D001304 ORTHO05D008890 4.5e-63 245.4 165 74.5
Sc04g0009800 Simmondsia chinensis HOM05D001304 ORTHO05D008890 5.9e-63 245.0 180 68.9
Ah.02g130500 Amaranthus hybridus HOM05D001304 ORTHO05D008890 7.8e-63 244.6 212 62.3
ATR0824G252 Amborella trichopoda HOM05D001304 ORTHO05D008890 7.8e-63 244.6 160 75.6
EL10As2g23248 Beta vulgaris HOM05D001304 ORTHO05D008890 7.8e-63 244.6 228 58.8
Rhsim12G0107100 Rhododendron simsii HOM05D001304 ORTHO05D008890 1.0e-62 244.2 178 70.2
Gohir.A04G137800 Gossypium hirsutum HOM05D001304 ORTHO05D008890 1.3e-62 243.8 237 62.0
Gorai.012G174200 Gossypium raimondii HOM05D001304 ORTHO05D008890 2.9e-62 242.7 157 75.2
Lalb_Chr08g0230761 Lupinus albus HOM05D001304 ORTHO05D008890 5.0e-62 241.9 165 72.7
CDE09G0600 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 1.1e-61 240.7 168 72.0
AUR62024180 Chenopodium quinoa HOM05D001304 ORTHO05D008890 1.1e-61 240.7 238 57.6
Lj6g0017703 Lotus japonicus HOM05D001304 ORTHO05D008890 7.3e-61 238.0 165 72.7
Nitab4.5_0001318g0090 Nicotiana tabacum HOM05D001304 ORTHO05D008890 4.7e-60 235.3 230 55.7
Atru.chr11.2216 Acer truncatum HOM05D001304 ORTHO05D008890 1.0e-59 234.2 143 78.3
HPP92_004594 Vanilla planifolia HOM05D001304 ORTHO05D008890 6.8e-59 231.5 165 71.5
Hund06057 Selenicereus undatus HOM05D001304 ORTHO05D008890 3.7e-57 225.7 229 56.8
Medtr3g086040 Medicago truncatula HOM05D001304 ORTHO05D008890 5.0e-54 215.3 161 65.2
GSVIVG01010306001 Vitis vinifera HOM05D001304 ORTHO05D008890 6.6e-54 214.9 148 73.0
TPR.G33410 Trifolium pratense HOM05D001304 ORTHO05D008890 4.3e-53 212.2 152 66.4
CDE04G1632 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 5.6e-53 211.8 167 61.1
Zm00001eb246340 Zea mays HOM05D001304 ORTHO05D008890 5.6e-53 211.8 176 63.1
Os02g0600200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D008890 9.5e-53 211.1 176 64.2
CSS0032412 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D008721 2.1e-52 209.9 147 70.1
vmacro16148 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 8.0e-52 208.0 144 73.6
Actinidia24567 Actinidia chinensis HOM05D001304 ORTHO05D008890 2.6e-50 203.0 238 51.3
TAR629G1650 Trochodendron aralioides HOM05D001304 ORTHO05D008890 5.8e-50 201.8 141 70.9
Cpa.g.c30628.2 Carica papaya HOM05D001304 ORTHO05D008890 3.7e-49 199.1 231 52.4
BolC6t38945H Brassica oleracea HOM05D001304 ORTHO05D008890 5.2e-43 178.7 116 75.9
Psat5g093920 Pisum sativum HOM05D001304 ORTHO05D008890 2.6e-42 176.4 95 83.2
Hma1.2p1_0079F.1_g041530 Hydrangea macrophylla HOM05D001304 ORTHO05D008890 5.8e-42 175.3 235 48.1
Pp3c14_9580 Physcomitrium patens HOM05D001304 ORTHO05D008890 9.2e-40 167.9 170 52.4
SEGI_40444 Sequoiadendron giganteum HOM05D001304 ORTHO05D008890 3.9e-38 162.5 175 48.6
AagrBONN_evm.TU.Sc2ySwM_368.469 Anthoceros agrestis HOM05D001304 ORTHO05D008890 3.3e-37 159.5 176 45.5
DCAR_026486 Daucus carota HOM05D000468 ORTHO05D008890 3.4e-34 149.4 137 60.6
Mapoly0101s0039 Marchantia polymorpha HOM05D001304 ORTHO05D008890 3.4e-34 149.4 157 45.2
CBR_g28672 Chara braunii HOM05D001304 ORTHO05D008890 3.8e-33 146.0 169 45.0
Cfa021197 Carpinus fangiana HOM05D001304 ORTHO05D008890 1.9e-32 143.7 145 58.6
MELO3C010716.2 Cucumis melo HOM05D001304 ORTHO05D008890 1.6e-31 140.6 140 56.4
Duzib248G0877 Durio zibethinus HOM05D001304 ORTHO05D008890 1.7e-30 137.1 149 51.7
arahy.Tifrunner.gnm1.ann1.Q18UTF Arachis hypogaea HOM05D001304 ORTHO05D008890 2.3e-30 136.7 151 51.7
SMO367G0665 Selaginella moellendorffii HOM05D001304 ORTHO05D008890 1.8e-27 127.1 136 45.6
MBI06_g05241_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D008890 1.0e-22 111.3 94 63.8
Oeu009356.1 Olea europaea HOM05D001304 ORTHO05D008890 1.1e-16 91.3 57 75.4
PRCOL_00000361 Prasinoderma coloniale HOM05D001304 ORTHO05D008890 9.6e-13 78.2 157 28.7
MCO01G115 Micromonas commoda HOM05D001304 ORTHO05D008890 7.6e-10 68.6 169 27.8
ClCG08G017440 Citrullus lanatus HOM05D001304 ORTHO05D008890 4.6e-07 59.3 94 43.6
HanXRQChr03g0075761 Helianthus annuus HOM05D001304 ORTHO05D223772 1.8e-06 57.4 96 38.5


User provided reference genes

Program Settings