Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 1.4e-129 467.6 240 100.0
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 1.4e-84 318.2 244 66.8
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 9.9e-46 189.1 243 46.9
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 7.1e-44 183.0 232 45.7
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 1.2e-43 182.2 213 48.4
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 7.9e-43 179.5 225 47.6
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 1.8e-42 178.3 195 49.2
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 6.7e-42 176.4 226 45.6
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 4.3e-41 173.7 219 44.7
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 2.1e-40 171.4 239 45.6
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 2.8e-40 171.0 194 47.4
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 1.9e-36 158.3 259 39.8
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.3e-34 152.1 236 39.0
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 8.7e-34 149.4 229 40.6
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 1.5e-33 148.7 204 44.6
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.5e-33 147.9 211 45.0
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 4.3e-33 147.1 250 40.4
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 7.4e-33 146.4 244 38.5
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.2e-32 144.8 209 45.0
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 2.8e-32 144.4 250 40.0
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 4.8e-32 143.7 141 53.9
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.1e-31 142.5 238 40.3
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 3.1e-31 141.0 242 37.2
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 4.1e-31 140.6 224 38.4
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 5.3e-31 140.2 240 36.2
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 9.0e-31 139.4 246 39.0
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 1.2e-30 139.0 229 36.2
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 1.5e-30 138.7 233 36.5
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.5e-30 138.7 211 40.8
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 3.4e-30 137.5 190 39.5
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 3.4e-30 137.5 242 34.7
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 4.5e-30 137.1 223 39.0
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 1.0e-29 136.0 223 38.6
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 1.3e-29 135.6 214 35.5
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 1.3e-29 135.6 205 41.0
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 2.2e-29 134.8 213 35.7
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.9e-29 134.4 240 35.0
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 2.9e-29 134.4 147 49.0
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 5.0e-29 133.7 193 42.0
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 8.5e-29 132.9 241 35.3
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 1.9e-28 131.7 208 36.5
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.9e-28 131.7 247 34.4
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 2.5e-28 131.3 243 36.6
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 3.2e-28 131.0 209 39.2
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 5.5e-28 130.2 186 41.4
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 7.2e-28 129.8 247 35.6
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 9.4e-28 129.4 148 45.9
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 9.4e-28 129.4 235 38.3
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 1.6e-27 128.6 251 38.2
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 1.6e-27 128.6 228 36.4
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 2.1e-27 128.3 188 38.8
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 2.7e-27 127.9 240 34.6
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 7.9e-27 126.3 246 35.8
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 7.9e-27 126.3 198 40.4
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 7.9e-27 126.3 254 35.8
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 7.9e-27 126.3 225 37.3
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.4e-26 125.6 225 37.3
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 1.8e-26 125.2 198 40.4
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 2.3e-26 124.8 202 40.1
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 3.0e-26 124.4 217 35.5
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 3.9e-26 124.0 225 36.9
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 6.7e-26 123.2 250 34.4
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 2.0e-25 121.7 244 33.6
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 7.4e-25 119.8 249 33.7
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 9.7e-25 119.4 72 80.6
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 1.3e-24 119.0 176 41.5
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 1.7e-24 118.6 235 35.7
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 2.2e-24 118.2 113 55.8
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 2.8e-24 117.9 201 38.8
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 6.3e-24 116.7 217 35.0
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 1.1e-23 115.9 188 36.7
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 1.8e-23 115.2 199 39.7
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 6.9e-23 113.2 217 31.3
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 6.9e-23 113.2 210 32.9
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 9.1e-23 112.8 199 38.2
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.2e-22 112.5 146 41.8
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 1.5e-22 112.1 195 32.3
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 2.0e-22 111.7 187 35.8
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 2.6e-22 111.3 181 39.2
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.3e-21 109.0 178 35.4
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 2.9e-21 107.8 222 32.9
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 2.9e-21 107.8 200 37.5
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 3.8e-21 107.5 187 35.3
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 8.5e-21 106.3 214 31.3
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 1.1e-20 105.9 173 39.3
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 2.5e-20 104.8 203 34.0
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 2.5e-20 104.8 215 30.7
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 4.2e-20 104.0 154 40.3
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 5.5e-20 103.6 199 36.2
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 1.2e-19 102.4 181 32.0
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 2.7e-19 101.3 211 33.2
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 4.7e-19 100.5 171 39.2
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 4.7e-19 100.5 181 31.5
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 7.9e-19 99.8 245 30.6
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 2.3e-18 98.2 171 33.3
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 3.9e-18 97.4 210 32.9
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 5.1e-18 97.1 215 29.8
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 6.7e-18 96.7 251 28.7
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 8.8e-18 96.3 199 34.2
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.1e-17 95.9 239 28.5
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 1.5e-17 95.5 195 31.3
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 2.0e-17 95.1 143 37.8
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 3.3e-17 94.4 176 37.5
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 4.4e-17 94.0 189 32.3
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 7.4e-17 93.2 137 40.9
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.3e-16 92.4 185 35.7
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.8e-16 91.3 198 34.3
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 2.8e-16 91.3 172 33.7
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 4.8e-16 90.5 205 33.2
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 1.1e-15 89.4 128 39.1
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 3.1e-15 87.8 90 51.1
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 4.1e-15 87.4 213 26.8
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 4.1e-15 87.4 138 39.9
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 4.1e-15 87.4 198 27.8
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 5.3e-15 87.0 195 30.3
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 9.1e-15 86.3 198 34.8
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 1.5e-14 85.5 157 33.8
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 2.0e-14 85.1 206 31.1
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 2.0e-14 85.1 151 37.1
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 2.6e-14 84.7 199 33.2
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 3.5e-14 84.3 198 33.8
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 3.5e-14 84.3 198 33.8
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 3.5e-14 84.3 179 34.1
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 4.5e-14 84.0 187 32.1
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 4.5e-14 84.0 157 30.6
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 7.7e-14 83.2 198 32.8
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 1.0e-13 82.8 221 33.0
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 1.0e-13 82.8 162 29.0
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 1.0e-13 82.8 157 30.6
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 1.7e-13 82.0 149 32.2
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 5.0e-13 80.5 201 32.8
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 6.5e-13 80.1 156 30.1
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 8.5e-13 79.7 201 32.3
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 1.9e-12 78.6 205 30.2
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 5.5e-12 77.0 174 31.0
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 1.6e-11 75.5 103 39.8
HanXRQChr02g0053431 Helianthus annuus HOM05D004255 ORTHO05D004815 4.7e-11 73.9 39 94.9
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 6.1e-11 73.6 164 30.5
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 2.3e-10 71.6 208 27.4
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 2.6e-09 68.2 76 44.7
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 4.4e-09 67.4 96 39.6
A06p06540 Brassica napus HOM05D006888 ORTHO05D008371 5.7e-09 67.0 195 27.2
Carub.0001s0920 Capsella rubella HOM05D006888 ORTHO05D008371 9.7e-09 66.2 213 25.8
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 9.7e-09 66.2 198 28.3
AL1G20420 Arabidopsis lyrata HOM05D006888 ORTHO05D008371 1.7e-08 65.5 210 25.2
AT1G09820 Arabidopsis thaliana HOM05D006888 ORTHO05D008371 1.7e-08 65.5 194 25.8
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 1.7e-08 65.5 57 56.1
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 2.8e-08 64.7 165 27.9
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 3.7e-08 64.3 124 29.8
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 6.3e-08 63.5 137 29.2
BolC5t29545H Brassica oleracea HOM05D006888 ORTHO05D008371 1.1e-07 62.8 240 25.8
C05p07930 Brassica napus HOM05D006888 ORTHO05D008371 1.4e-07 62.4 240 25.4
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.4e-07 62.4 82 40.2
BcaC05g24842 Brassica carinata HOM05D006888 ORTHO05D008371 1.8e-07 62.0 192 28.6
BraA06t23865Z Brassica rapa HOM05D006888 ORTHO05D008371 2.4e-07 61.6 195 26.2
Sp1g08450 Schrenkiella parvula HOM05D006888 ORTHO05D008371 2.4e-07 61.6 216 25.5
CARHR009830 Cardamine hirsuta HOM05D006888 ORTHO05D008371 1.2e-06 59.3 204 24.0
Thhalv10009487m.g Eutrema salsugineum HOM05D006888 ORTHO05D008371 1.6e-06 58.9 194 24.2
BolC4t23855H Brassica oleracea HOM05D004255 ORTHO05D004815 7.7e-06 56.6 143 28.7


User provided reference genes

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