Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0206051 Helianthus annuus HOM05D000646 ORTHO05D031384 2.8e-54 214.9 103 100.0
unitig_46.g18489 Utricularia gibba HOM05D000646 ORTHO05D000607 3.0e-11 72.0 56 64.3
Lj9A392G37 Lonicera japonica HOM05D000646 ORTHO05D000607 1.5e-10 69.7 62 59.7
Actinidia23590 Actinidia chinensis HOM05D000646 ORTHO05D000607 2.5e-10 68.9 46 71.7
Actinidia31250 Actinidia chinensis HOM05D000646 ORTHO05D000607 2.5e-10 68.9 46 71.7
CSS0006153 Camellia sinensis var. sinensis HOM05D000646 ORTHO05D000607 2.5e-10 68.9 62 61.3
Ciclev10028990m.g Citrus clementina HOM05D000646 ORTHO05D000607 4.3e-10 68.2 62 58.1
Dinv14098 Davidia involucrata HOM05D000646 ORTHO05D000607 5.6e-10 67.8 46 69.6
CSS0007354 Camellia sinensis var. sinensis HOM05D000646 ORTHO05D000607 7.3e-10 67.4 42 76.2
Lsat_1_v5_gn_3_46681 Lactuca sativa HOM05D000646 ORTHO05D000607 7.3e-10 67.4 46 69.6
Migut.B00088 Erythranthe guttata HOM05D000646 ORTHO05D000607 9.6e-10 67.0 56 58.9
Hma1.2p1_0163F.1_g072370 Hydrangea macrophylla HOM05D000646 ORTHO05D000607 9.6e-10 67.0 46 71.7
ECA246G0512 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.3e-09 66.6 46 69.6
Gohir.D01G158600 Gossypium hirsutum HOM05D000646 ORTHO05D000607 1.3e-09 66.6 62 58.1
Gorai.002G196800 Gossypium raimondii HOM05D000646 ORTHO05D000607 1.3e-09 66.6 62 58.1
HanXRQChr17g0544251 Helianthus annuus HOM05D000646 ORTHO05D000607 1.3e-09 66.6 46 69.6
vmacro17356 Vaccinium macrocarpon HOM05D000646 ORTHO05D031384 1.3e-09 66.6 43 72.1
arahy.Tifrunner.gnm1.ann1.KAS3CI Arachis hypogaea HOM05D000646 ORTHO05D000607 1.6e-09 66.2 46 69.6
arahy.Tifrunner.gnm1.ann1.ZB3H4T Arachis hypogaea HOM05D000646 ORTHO05D000607 1.6e-09 66.2 46 69.6
HanXRQChr15g0478771 Helianthus annuus HOM05D000646 ORTHO05D000607 1.6e-09 66.2 42 76.2
MBI12_g36979_MAGBIO Magnolia biondii HOM05D000646 ORTHO05D000607 1.6e-09 66.2 45 68.9
Oeu008325.1 Olea europaea HOM05D000646 ORTHO05D000607 1.6e-09 66.2 56 58.9
Thecc.02G061300 Theobroma cacao HOM05D000646 ORTHO05D000607 1.6e-09 66.2 46 69.6
CDE02G1916 Ceratophyllum demersum HOM05D000646 ORTHO05D000607 2.1e-09 65.9 46 67.4
CDE04G0875 Ceratophyllum demersum HOM05D000646 ORTHO05D000607 2.8e-09 65.5 46 67.4
Gohir.A01G167400 Gossypium hirsutum HOM05D000646 ORTHO05D000607 2.8e-09 65.5 62 58.1
TAR625G0806 Trochodendron aralioides HOM05D000646 ORTHO05D000607 2.8e-09 65.5 46 69.6
Lalb_Chr03g0025131 Lupinus albus HOM05D000646 ORTHO05D000607 3.6e-09 65.1 46 69.6
MD00G1173600 Malus domestica HOM05D000646 ORTHO05D000607 3.6e-09 65.1 46 69.6
Rhsim05G0060700 Rhododendron simsii HOM05D000524 ORTHO05D000381 3.6e-09 65.1 40 77.5
GSVIVG01024035001 Vitis vinifera HOM05D000646 ORTHO05D000607 3.6e-09 65.1 46 69.6
Lalb_Chr19g0139161 Lupinus albus HOM05D000646 ORTHO05D000607 4.8e-09 64.7 46 69.6
Potri.009G134100 Populus trichocarpa HOM05D000646 ORTHO05D000607 4.8e-09 64.7 46 67.4
Sed0004709 Sechium edule HOM05D000646 ORTHO05D000607 4.8e-09 64.7 46 69.6
DCAR_003164 Daucus carota HOM05D000646 ORTHO05D000607 6.2e-09 64.3 46 65.2
Duzib132G0364 Durio zibethinus HOM05D000646 ORTHO05D000607 6.2e-09 64.3 46 67.4
SalBow1G1584 Salvia bowleyana HOM05D000646 ORTHO05D000607 6.2e-09 64.3 72 51.4
COL.COLO4_17322 Corchorus olitorius HOM05D000646 ORTHO05D000607 8.1e-09 63.9 46 65.2
Atru.chr5.3306 Acer truncatum HOM05D000646 ORTHO05D000607 1.1e-08 63.5 46 65.2
MSTRG.16900 Avicennia marina HOM05D000646 ORTHO05D000607 1.4e-08 63.2 56 57.1
Duzib052G0534 Durio zibethinus HOM05D000646 ORTHO05D000607 1.4e-08 63.2 62 54.8
Sabra04G0116400 Salix brachista HOM05D000646 ORTHO05D000607 1.4e-08 63.2 62 54.8
TAR628G0137 Trochodendron aralioides HOM05D000646 ORTHO05D000607 1.4e-08 63.2 46 67.4
AagrBONN_evm.TU.Sc2ySwM_228.2305 Anthoceros agrestis HOM05D000646 ORTHO05D000607 1.8e-08 62.8 46 65.2
CiPaw.05G081100 Carya illinoinensis HOM05D000646 ORTHO05D000607 1.8e-08 62.8 46 67.4
ClCG02G004180 Citrullus lanatus HOM05D000646 ORTHO05D000607 1.8e-08 62.8 46 67.4
MD05G1120800 Malus domestica HOM05D000646 ORTHO05D000607 1.8e-08 62.8 46 67.4
Os08g0549100 Oryza sativa ssp. japonica HOM05D000646 ORTHO05D000607 1.8e-08 62.8 46 65.2
VMungo1127G0105 Vigna mungo HOM05D000524 ORTHO05D000381 1.8e-08 62.8 46 67.4
Manes.11G094500 Manihot esculenta HOM05D000646 ORTHO05D000607 2.4e-08 62.4 63 50.8
Nitab4.5_0012050g0010 Nicotiana tabacum HOM05D000646 ORTHO05D000607 2.4e-08 62.4 46 63.0
Nitab4.5_0018666g0010 Nicotiana tabacum HOM05D000646 ORTHO05D000607 2.4e-08 62.4 46 63.0
Sed0024322 Sechium edule HOM05D000646 ORTHO05D000607 2.4e-08 62.4 46 65.2
SGA_v2.0_scaffold58G20379 Striga asiatica HOM05D000646 ORTHO05D000607 2.4e-08 62.4 56 57.1
TWI31G0937 Tripterygium wilfordii HOM05D000646 ORTHO05D000607 2.4e-08 62.4 46 65.2
Cpa.g.sc37.148 Carica papaya HOM05D000646 ORTHO05D000607 3.1e-08 62.0 46 63.0
Glyma.11G107200 Glycine max HOM05D000646 ORTHO05D000607 3.1e-08 62.0 46 65.2
HanXRQChr15g0483901 Helianthus annuus HOM05D000646 ORTHO05D000607 3.1e-08 62.0 46 65.2
Oeu055663.1 Olea europaea HOM05D000646 ORTHO05D000607 3.1e-08 62.0 56 57.1
Glyma.12G032300 Glycine max HOM05D000646 ORTHO05D000607 4.0e-08 61.6 46 65.2
Gohir.A03G204900 Gossypium hirsutum HOM05D000646 ORTHO05D000607 4.0e-08 61.6 46 63.0
Gohir.D02G226200 Gossypium hirsutum HOM05D000646 ORTHO05D000607 4.0e-08 61.6 46 63.0
Gorai.005G254100 Gossypium raimondii HOM05D000646 ORTHO05D000607 4.0e-08 61.6 46 63.0
Sopen01g053550 Solanum pennellii HOM05D000646 ORTHO05D000607 4.0e-08 61.6 47 59.6
CAN.G588.68 Capsicum annuum HOM05D000646 ORTHO05D000607 5.3e-08 61.2 46 60.9
Cc02_g16260 Coffea canephora HOM05D000646 ORTHO05D000607 5.3e-08 61.2 46 63.0
Pp3c1_26270 Physcomitrium patens HOM05D000646 ORTHO05D000607 5.3e-08 61.2 46 60.9
QL11p050032 Quercus lobata HOM05D000646 ORTHO05D000607 5.3e-08 61.2 46 65.2
Solyc01g111510.3 Solanum lycopersicum HOM05D000646 ORTHO05D000607 5.3e-08 61.2 46 60.9
PGSC0003DMG400006175 Solanum tuberosum HOM05D000646 ORTHO05D000607 5.3e-08 61.2 46 60.9
Carub.0003s3048 Capsella rubella HOM05D000646 ORTHO05D000607 6.9e-08 60.8 48 58.3
Haze_02151 Corylus avellana HOM05D000646 ORTHO05D000607 6.9e-08 60.8 46 65.2
Potri.004G174500 Populus trichocarpa HOM05D000646 ORTHO05D000607 6.9e-08 60.8 57 57.9
Sc18g0006490 Simmondsia chinensis HOM05D000646 ORTHO05D000607 6.9e-08 60.8 46 65.2
Phvul.011G035000 Phaseolus vulgaris HOM05D000646 ORTHO05D000607 9.0e-08 60.5 46 65.2
MSTRG.3607 Avicennia marina HOM05D000646 ORTHO05D000607 1.2e-07 60.1 46 63.0
CAN.G1274.27 Capsicum annuum HOM05D000646 ORTHO05D000607 1.2e-07 60.1 46 60.9
Psat0s4922g0040 Pisum sativum HOM05D000646 ORTHO05D000607 1.2e-07 60.1 46 63.0
Prupe.8G164400 Prunus persica HOM05D000646 ORTHO05D000607 1.2e-07 60.1 46 63.0
Aqoxy6G02195 Aquilegia oxysepala HOM05D000646 ORTHO05D000607 1.5e-07 59.7 46 63.0
CANSAT25G3731 Cannabis sativa HOM05D000646 ORTHO05D000607 2.0e-07 59.3 46 63.0
CsaV3_7G000930 Cucumis sativus L. HOM05D000646 ORTHO05D000607 2.0e-07 59.3 46 65.2
Lj3g0013273 Lotus japonicus HOM05D000646 ORTHO05D000607 2.0e-07 59.3 46 60.9
Peaxi162Scf00362g00830 Petunia axillaris HOM05D000646 ORTHO05D000607 2.0e-07 59.3 46 58.7
RcHm_v2.0_Chr6g0252201 Rosa chinensis HOM05D000646 ORTHO05D000607 2.0e-07 59.3 46 60.9
Zm00001eb202790 Zea mays HOM05D000646 ORTHO05D000607 2.0e-07 59.3 46 60.9
CARHR243280 Cardamine hirsuta HOM05D000646 ORTHO05D000607 2.6e-07 58.9 46 58.7
Nn5g30762 Nelumbo nucifera HOM05D000646 ORTHO05D000607 2.6e-07 58.9 46 60.9
Hund00027 Selenicereus undatus HOM05D000646 ORTHO05D000607 2.6e-07 58.9 46 63.0
SGA_v2.0_scaffold32G13275 Striga asiatica HOM05D000646 ORTHO05D000607 2.6e-07 58.9 42 64.3
TPR.G39232 Trifolium pratense HOM05D000646 ORTHO05D000607 2.6e-07 58.9 46 63.0
AL3G49430 Arabidopsis lyrata HOM05D000646 ORTHO05D000607 3.4e-07 58.5 46 58.7
Lj4A222T54 Lonicera japonica HOM05D000646 ORTHO05D000607 3.4e-07 58.5 62 51.6
PSO170G1755 Papaver somniferum HOM05D000646 ORTHO05D000607 3.4e-07 58.5 46 60.9
PSO700G0109 Papaver somniferum HOM05D000646 ORTHO05D000607 3.4e-07 58.5 46 60.9
Prupe.7G171200 Prunus persica HOM05D000646 ORTHO05D000607 3.4e-07 58.5 46 58.7
Solyc02g083620.3 Solanum lycopersicum HOM05D000646 ORTHO05D000607 3.4e-07 58.5 46 58.7
THA.LOC104804329 Tarenaya hassleriana HOM05D000646 ORTHO05D000607 3.4e-07 58.5 46 58.7
Atru.chr3.850 Acer truncatum HOM05D000646 ORTHO05D000607 4.5e-07 58.2 56 53.6
BcaB08g34665 Brassica carinata HOM05D000646 ORTHO05D000607 4.5e-07 58.2 46 58.7
BcaC01g02987 Brassica carinata HOM05D000646 ORTHO05D000607 4.5e-07 58.2 46 58.7
A03p45990 Brassica napus HOM05D000646 ORTHO05D000607 4.5e-07 58.2 46 58.7
C03p57450 Brassica napus HOM05D000646 ORTHO05D000607 4.5e-07 58.2 46 58.7
BolC3t18020H Brassica oleracea HOM05D000646 ORTHO05D000607 4.5e-07 58.2 46 58.7
BraA03t13728Z Brassica rapa HOM05D000646 ORTHO05D000607 4.5e-07 58.2 46 58.7
ECA246G0850 Erigeron canadensis HOM05D000646 ORTHO05D000607 4.5e-07 58.2 46 60.9
Eucgr.I01408 Eucalyptus grandis HOM05D000646 ORTHO05D000607 4.5e-07 58.2 72 45.8
Thhalv10022797m.g Eutrema salsugineum HOM05D000646 ORTHO05D000607 4.5e-07 58.2 46 58.7
FvH4_2g01310 Fragaria vesca HOM05D000646 ORTHO05D000607 4.5e-07 58.2 46 58.7
FAN20G2439 Fragaria x ananassa HOM05D000646 ORTHO05D000607 4.5e-07 58.2 46 58.7
FAN24G0627 Fragaria x ananassa HOM05D000646 ORTHO05D000607 4.5e-07 58.2 46 58.7
Manes.01G147300 Manihot esculenta HOM05D000646 ORTHO05D000607 4.5e-07 58.2 46 58.7
PGR142G3454 Punica granatum HOM05D000646 ORTHO05D000607 4.5e-07 58.2 56 51.8
Sp3g30010 Schrenkiella parvula HOM05D000646 ORTHO05D000607 4.5e-07 58.2 46 58.7
AL3G49420 Arabidopsis lyrata HOM05D000646 ORTHO05D000607 5.8e-07 57.8 46 60.9
Carub.0003s3050 Capsella rubella HOM05D000646 ORTHO05D000607 5.8e-07 57.8 46 58.7
MD15G1242900 Malus domestica HOM05D000646 ORTHO05D000607 5.8e-07 57.8 62 48.4
Medtr4g073410 Medicago truncatula HOM05D000646 ORTHO05D000607 5.8e-07 57.8 46 60.9
ATR0712G050 Amborella trichopoda HOM05D000646 ORTHO05D000607 7.6e-07 57.4 46 58.7
CiPaw.06G122900 Carya illinoinensis HOM05D000646 ORTHO05D000607 7.6e-07 57.4 46 60.9
FvH4_1g11491 Fragaria vesca HOM05D000646 ORTHO05D000607 7.6e-07 57.4 46 58.7
FAN15G1778 Fragaria x ananassa HOM05D000646 ORTHO05D000607 7.6e-07 57.4 42 61.9
FAN19G0633 Fragaria x ananassa HOM05D000646 ORTHO05D000607 7.6e-07 57.4 46 58.7
FAN26G2406 Fragaria x ananassa HOM05D000646 ORTHO05D000607 7.6e-07 57.4 46 58.7
SEGI_08847 Sequoiadendron giganteum HOM05D000646 ORTHO05D000607 7.6e-07 57.4 46 54.3
Sopen02g028400 Solanum pennellii HOM05D000646 ORTHO05D000607 7.6e-07 57.4 46 56.5
PGSC0003DMG402003646 Solanum tuberosum HOM05D000646 ORTHO05D000607 7.6e-07 57.4 46 56.5
BraA03t15399Z Brassica rapa HOM05D000646 ORTHO05D000607 9.9e-07 57.0 62 50.0
CANSAT25G0187 Cannabis sativa HOM05D000646 ORTHO05D000607 9.9e-07 57.0 46 60.9
Eucgr.J02463 Eucalyptus grandis HOM05D000646 ORTHO05D000607 9.9e-07 57.0 46 58.7
Carub.0007s0531 Capsella rubella HOM05D000646 ORTHO05D000607 1.3e-06 56.6 62 50.0
CARHR106960 Cardamine hirsuta HOM05D000646 ORTHO05D000607 1.3e-06 56.6 46 58.7
Cc07_g11020 Coffea canephora HOM05D000646 ORTHO05D000607 1.3e-06 56.6 46 56.5
MBI09_g41705_MAGBIO Magnolia biondii HOM05D000646 ORTHO05D000607 1.3e-06 56.6 42 64.3
PGR102G2521 Punica granatum HOM05D000646 ORTHO05D000607 1.7e-06 56.2 46 56.5
Thhalv10025911m.g Eutrema salsugineum HOM05D000646 ORTHO05D000607 2.2e-06 55.8 46 54.3
Sabra05G0092000 Salix brachista HOM05D000646 ORTHO05D000607 2.2e-06 55.8 46 56.5
SMO367G0265 Selaginella moellendorffii HOM05D000646 ORTHO05D000607 2.2e-06 55.8 46 56.5
HPP92_012938 Vanilla planifolia HOM05D000646 ORTHO05D000607 2.2e-06 55.8 46 56.5
AL7G16220 Arabidopsis lyrata HOM05D000646 ORTHO05D000607 2.9e-06 55.5 46 54.3
BcaNung02368 Brassica carinata HOM05D000646 ORTHO05D000607 2.9e-06 55.5 62 48.4
C07p60860 Brassica napus HOM05D000646 ORTHO05D000607 2.9e-06 55.5 62 48.4
BolC7t46514H Brassica oleracea HOM05D000646 ORTHO05D000607 2.9e-06 55.5 62 48.4
Lsat_1_v5_gn_3_72100 Lactuca sativa HOM05D000646 ORTHO05D000607 2.9e-06 55.5 46 58.7
Lsat_1_v5_gn_3_72581 Lactuca sativa HOM05D000646 ORTHO05D000607 2.9e-06 55.5 46 58.7
Ah.03g149070 Amaranthus hybridus HOM05D000646 ORTHO05D000607 3.8e-06 55.1 46 56.5
AT4G35000 Arabidopsis thaliana HOM05D000646 ORTHO05D000607 3.8e-06 55.1 46 54.3
A03p63220 Brassica napus HOM05D000646 ORTHO05D000607 3.8e-06 55.1 62 48.4
Ca_19062_v3 Cicer arietinum L. HOM05D000646 ORTHO05D000607 3.8e-06 55.1 46 58.7
MBI19_g45013_MAGBIO Magnolia biondii HOM05D000646 ORTHO05D000607 3.8e-06 55.1 46 58.7
Nitab4.5_0003187g0040 Nicotiana tabacum HOM05D000646 ORTHO05D000607 3.8e-06 55.1 46 54.3
Oeu011650.1 Olea europaea HOM05D000646 ORTHO05D000607 3.8e-06 55.1 45 60.0
Potri.005G112200 Populus trichocarpa HOM05D000646 ORTHO05D000607 3.8e-06 55.1 46 54.3
HPP92_001034 Vanilla planifolia HOM05D000646 ORTHO05D000607 3.8e-06 55.1 46 58.7
FvH4_1g11490 Fragaria vesca HOM05D000646 ORTHO05D000607 4.9e-06 54.7 46 56.5
FAN23G1910 Fragaria x ananassa HOM05D000646 ORTHO05D000607 4.9e-06 54.7 46 56.5
FAN28G0856 Fragaria x ananassa HOM05D000646 ORTHO05D000607 4.9e-06 54.7 46 56.5
HPP92_012713 Vanilla planifolia HOM05D000646 ORTHO05D000607 6.4e-06 54.3 62 48.4
Aa31LG2G15480 Aethionema arabicum HOM05D000646 ORTHO05D000607 8.4e-06 53.9 57 50.9
Ciclev10026205m.g Citrus clementina HOM05D000646 ORTHO05D000607 8.4e-06 53.9 46 54.3
MBI09_g46219_MAGBIO Magnolia biondii HOM05D000646 ORTHO05D000607 8.4e-06 53.9 46 58.7
Rhsim10G0209400 Rhododendron simsii HOM05D000646 ORTHO05D000607 8.4e-06 53.9 41 61.0
SalBow5G5151 Salvia bowleyana HOM05D000646 ORTHO05D000607 8.4e-06 53.9 46 56.5
unitig_37.g12439 Utricularia gibba HOM05D000646 ORTHO05D000607 8.4e-06 53.9 63 46.0
Zm00001eb419790 Zea mays HOM05D000646 ORTHO05D000607 8.4e-06 53.9 46 58.7


User provided reference genes

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