Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 1.6e-81 306.2 176 100.0
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 2.3e-56 222.6 180 80.6
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 4.9e-54 214.9 165 80.0
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 2.4e-53 212.6 165 77.0
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.4e-53 212.6 165 77.0
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.4e-53 212.6 165 77.0
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.0e-52 209.5 165 76.4
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.9e-52 208.0 165 77.6
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 2.5e-50 202.6 172 65.7
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 4.3e-50 201.8 158 78.5
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 7.3e-50 201.1 164 76.8
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 1.8e-48 196.4 174 62.1
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 3.1e-48 195.7 168 73.2
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.5e-47 193.4 165 74.5
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 3.4e-47 192.2 168 73.8
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 5.8e-47 191.4 160 73.8
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 3.2e-45 185.7 175 70.9
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 5.4e-45 184.9 171 58.5
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 5.4e-45 184.9 175 69.1
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.9e-43 178.7 163 72.4
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 6.6e-43 177.9 168 69.0
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 1.5e-42 176.8 149 74.5
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.3e-42 175.3 172 57.0
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 7.3e-42 174.5 176 55.1
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 9.5e-42 174.1 172 56.4
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.2e-41 173.7 161 70.8
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.6e-41 173.3 164 58.5
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 6.2e-41 171.4 168 56.5
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.3e-40 169.5 175 65.7
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 3.1e-40 169.1 232 44.8
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 4.0e-40 168.7 175 65.7
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 4.0e-40 168.7 175 65.7
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 4.0e-40 168.7 154 62.3
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 5.2e-40 168.3 165 69.1
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 6.8e-40 167.9 153 56.2
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 5.8e-39 164.9 127 81.9
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 5.8e-39 164.9 169 68.6
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 7.5e-39 164.5 166 52.4
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 9.9e-39 164.1 173 65.9
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 2.2e-38 162.9 163 57.1
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 2.9e-38 162.5 164 67.1
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 4.9e-38 161.8 175 64.0
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 6.4e-38 161.4 163 66.9
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 2.4e-37 159.5 163 68.1
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 3.2e-37 159.1 161 67.7
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 4.1e-37 158.7 152 59.2
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 1.2e-36 157.1 175 52.0
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.6e-36 156.8 174 50.0
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 2.7e-36 156.0 169 66.3
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 3.5e-36 155.6 174 50.0
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 4.6e-36 155.2 168 64.9
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 6.0e-36 154.8 164 65.2
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 6.0e-36 154.8 166 65.1
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 7.8e-36 154.5 152 62.5
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.3e-35 152.9 157 52.9
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 2.3e-35 152.9 174 50.0
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 2.3e-35 152.9 169 62.7
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 2.3e-35 152.9 127 78.0
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 3.0e-35 152.5 159 65.4
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 3.0e-35 152.5 169 62.7
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 3.9e-35 152.1 175 48.6
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 3.9e-35 152.1 163 51.5
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 5.1e-35 151.8 112 86.6
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 8.6e-35 151.0 162 64.8
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 8.6e-35 151.0 168 53.6
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 8.6e-35 151.0 164 64.0
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.1e-34 150.6 152 52.6
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.1e-34 150.6 153 66.7
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.1e-34 150.6 153 66.7
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 2.5e-34 149.4 163 50.3
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 2.5e-34 149.4 169 62.1
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 4.3e-34 148.7 169 50.9
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 9.5e-34 147.5 165 50.3
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 9.5e-34 147.5 163 63.8
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 9.5e-34 147.5 153 59.5
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 9.5e-34 147.5 164 52.4
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 1.2e-33 147.1 166 49.4
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.2e-33 147.1 162 53.1
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.2e-33 147.1 179 60.3
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 2.8e-33 146.0 167 59.9
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 3.6e-33 145.6 164 62.8
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 3.6e-33 145.6 163 49.1
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 4.7e-33 145.2 173 60.1
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 6.2e-33 144.8 173 60.7
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 8.1e-33 144.4 145 57.9
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 1.4e-32 143.7 175 51.4
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.4e-32 143.7 161 50.9
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 1.8e-32 143.3 168 61.9
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.8e-32 143.3 168 48.2
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 2.4e-32 142.9 167 60.5
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 4.0e-32 142.1 170 51.2
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 5.2e-32 141.7 173 59.5
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 5.2e-32 141.7 173 59.5
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 6.8e-32 141.4 169 60.4
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.2e-31 140.6 165 61.8
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 1.5e-31 140.2 131 69.5
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 2.0e-31 139.8 167 61.7
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 2.0e-31 139.8 173 60.1
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.4e-31 139.0 161 49.7
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 5.8e-31 138.3 163 47.9
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 7.6e-31 137.9 161 62.7
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 7.6e-31 137.9 169 47.9
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 9.9e-31 137.5 171 59.6
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 2.2e-30 136.3 170 58.8
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 3.8e-30 135.6 170 50.6
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.1e-29 134.0 168 58.9
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.1e-29 134.0 161 48.4
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.9e-29 133.3 160 49.4
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 1.9e-29 133.3 160 49.4
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 4.1e-29 132.1 180 44.4
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 4.1e-29 132.1 162 61.7
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 5.4e-29 131.7 162 58.6
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 7.1e-29 131.3 168 54.8
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 9.2e-29 131.0 160 48.8
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 1.2e-28 130.6 171 57.3
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.2e-28 130.6 171 44.4
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 1.2e-28 130.6 120 75.8
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.1e-28 129.8 169 59.8
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.1e-28 129.8 163 46.6
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.1e-28 129.8 171 46.8
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 2.7e-28 129.4 171 56.7
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 4.6e-28 128.6 171 56.7
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 4.6e-28 128.6 172 45.3
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 6.0e-28 128.3 109 56.0
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 7.8e-28 127.9 181 56.4
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 7.8e-28 127.9 181 55.8
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 1.0e-27 127.5 181 55.8
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 1.0e-27 127.5 181 55.8
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 1.7e-27 126.7 151 59.6
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 1.7e-27 126.7 151 59.6
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.3e-27 126.3 171 42.7
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 2.3e-27 126.3 172 44.2
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 2.3e-27 126.3 172 44.2
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.3e-27 126.3 172 44.2
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.3e-27 126.3 180 41.7
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 3.0e-27 125.9 148 45.9
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 6.6e-27 124.8 162 56.2
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 1.1e-26 124.0 147 61.2
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 9.6e-26 120.9 160 41.9
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.2e-25 120.6 182 53.8
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.8e-25 119.4 160 41.9
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 6.9e-24 114.8 150 58.7
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.2e-23 114.0 162 39.5
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 1.6e-20 103.6 132 44.7
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 4.6e-20 102.1 91 58.2
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 1.7e-19 100.1 97 55.7
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.3e-14 84.0 44 84.1
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.2e-14 83.2 95 50.5
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 1.1e-13 80.9 94 46.8
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 3.5e-12 75.9 92 45.7


User provided reference genes

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