Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0203451 Helianthus annuus HOM05D000263 ORTHO05D223542 1.2e-89 333.2 169 100.0
HanXRQChr16g0509551 Helianthus annuus HOM05D000263 ORTHO05D000213 3.3e-07 59.3 72 48.6
Gohir.D12G217200 Gossypium hirsutum HOM05D000263 ORTHO05D000213 7.3e-07 58.2 72 47.2
Gorai.008G232800 Gossypium raimondii HOM05D000263 ORTHO05D000213 7.3e-07 58.2 72 47.2
RcHm_v2.0_Chr7g0204571 Rosa chinensis HOM05D000263 ORTHO05D000213 7.3e-07 58.2 72 47.2
Sopen08g026700 Solanum pennellii HOM05D000263 ORTHO05D000213 7.3e-07 58.2 72 47.2
FvH4_5g19790 Fragaria vesca HOM05D000263 ORTHO05D000213 9.5e-07 57.8 64 50.0
FAN18G2449 Fragaria x ananassa HOM05D000263 ORTHO05D000213 9.5e-07 57.8 64 50.0
Gohir.A12G214600 Gossypium hirsutum HOM05D000263 ORTHO05D000213 1.6e-06 57.0 51 58.8
Solyc06g071100.4 Solanum lycopersicum HOM05D000263 ORTHO05D000213 1.6e-06 57.0 72 45.8
Sopen06g027400 Solanum pennellii HOM05D000263 ORTHO05D000213 1.6e-06 57.0 72 45.8
CSS0028713 Camellia sinensis var. sinensis HOM05D000263 ORTHO05D000213 2.1e-06 56.6 72 45.8
DCAR_016530 Daucus carota HOM05D000263 ORTHO05D000213 2.1e-06 56.6 72 44.4
DCAR_021539 Daucus carota HOM05D000263 ORTHO05D000213 2.1e-06 56.6 72 44.4
PGSC0003DMG400033034 Solanum tuberosum HOM05D000263 ORTHO05D000213 2.1e-06 56.6 72 44.4
COL.COLO4_37084 Corchorus olitorius HOM05D000263 ORTHO05D000213 2.8e-06 56.2 72 45.8
PSO017G4388 Papaver somniferum HOM05D000263 ORTHO05D000213 2.8e-06 56.2 72 45.8
PSO478G4298 Papaver somniferum HOM05D000263 ORTHO05D000213 2.8e-06 56.2 72 45.8
RcHm_v2.0_Chr2g0169231 Rosa chinensis HOM05D000263 ORTHO05D000213 2.8e-06 56.2 72 45.8
Solyc08g078200.2 Solanum lycopersicum HOM05D000263 ORTHO05D000213 2.8e-06 56.2 72 45.8
Thecc.03G245800 Theobroma cacao HOM05D000263 ORTHO05D000213 2.8e-06 56.2 72 45.8
CiPaw.13G027300 Carya illinoinensis HOM05D000263 ORTHO05D000213 3.6e-06 55.8 72 45.8
HanXRQChr05g0157971 Helianthus annuus HOM05D000263 ORTHO05D000213 3.6e-06 55.8 72 44.4
HanXRQChr08g0235741 Helianthus annuus HOM05D000263 ORTHO05D000213 3.6e-06 55.8 72 44.4
Lj9C458T5 Lonicera japonica HOM05D000263 ORTHO05D000213 3.6e-06 55.8 72 45.8
Lj2g0008351 Lotus japonicus HOM05D000263 ORTHO05D000213 3.6e-06 55.8 72 44.4
Sc12g0006140 Simmondsia chinensis HOM05D000263 ORTHO05D000213 3.6e-06 55.8 72 44.4
PGSC0003DMG400038156 Solanum tuberosum HOM05D000263 ORTHO05D000213 3.6e-06 55.8 64 48.4
AUR62023401 Chenopodium quinoa HOM05D000263 ORTHO05D000213 4.7e-06 55.5 72 43.1
Cc08_g11930 Coffea canephora HOM05D000263 ORTHO05D000213 4.7e-06 55.5 64 48.4
Duzib205G0234 Durio zibethinus HOM05D000263 ORTHO05D000213 4.7e-06 55.5 72 45.8
Lj5C117T5 Lonicera japonica HOM05D000263 ORTHO05D000213 4.7e-06 55.5 72 44.4
MD02G1216000 Malus domestica HOM05D000263 ORTHO05D000213 4.7e-06 55.5 72 44.4
PSO782G0296 Papaver somniferum HOM05D000263 ORTHO05D000213 4.7e-06 55.5 51 56.9
TAR371G1290 Trochodendron aralioides HOM05D000263 ORTHO05D000213 4.7e-06 55.5 72 44.4
GSVIVG01018265001 Vitis vinifera HOM05D000263 ORTHO05D000213 4.7e-06 55.5 72 45.8
arahy.Tifrunner.gnm1.ann1.3VET3K Arachis hypogaea HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
arahy.Tifrunner.gnm1.ann1.XPA4BD Arachis hypogaea HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
EL10Ac1g00754 Beta vulgaris HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
CSS0007236 Camellia sinensis var. sinensis HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 45.8
CSS0046845 Camellia sinensis var. sinensis HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 45.8
CAN.G999.28 Capsicum annuum HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
Ciclev10018727m.g Citrus clementina HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
ECA246G4365 Erigeron canadensis HOM05D000263 ORTHO05D000213 6.2e-06 55.1 61 49.2
Glyma.07G113500 Glycine max HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
Lju41A27T66 Lonicera japonica HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
Lj3g0022183 Lotus japonicus HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
MD03G1197800 Malus domestica HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
MD04G1058300 Malus domestica HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
Phvul.010G050900 Phaseolus vulgaris HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
Prupe.5G062200 Prunus persica HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
PGR031G1785 Punica granatum HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
Solyc03g113400.4 Solanum lycopersicum HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
Sopen03g032450 Solanum pennellii HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
PGSC0003DMG400025328 Solanum tuberosum HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
SGA_v2.0_scaffold205G41757 Striga asiatica HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
TWI60G1321 Tripterygium wilfordii HOM05D000263 ORTHO05D000213 6.2e-06 55.1 72 44.4
Atru.chr9.1250 Acer truncatum HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 44.4
Ah.10g031270 Amaranthus hybridus HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 43.1
Aqoxy3G02747 Aquilegia oxysepala HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 44.4
Cpa.g.sc17.191 Carica papaya HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 43.1
Cfa003448 Carpinus fangiana HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 44.4
CDE06G0946 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 44.4
Cc02_g25030 Coffea canephora HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 43.1
Dinv21676 Davidia involucrata HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 44.4
Dinv34991 Davidia involucrata HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 44.4
Eucgr.D02110 Eucalyptus grandis HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 44.4
FAN28G0930 Fragaria x ananassa HOM05D000263 ORTHO05D000213 8.1e-06 54.7 62 48.4
Glyma.05G030700 Glycine max HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 43.1
Glyma.17G096100 Glycine max HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 43.1
Gohir.A03G064600 Gossypium hirsutum HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 43.1
Gohir.D03G090900 Gossypium hirsutum HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 43.1
Gorai.003G094300 Gossypium raimondii HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 43.1
HanXRQChr10g0314521 Helianthus annuus HOM05D000263 ORTHO05D000213 8.1e-06 54.7 51 54.9
HanXRQChr13g0423171 Helianthus annuus HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 43.1
Lsat_1_v5_gn_3_131620 Lactuca sativa HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 43.1
Lj7C545T13 Lonicera japonica HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 44.4
Lj9C558T6 Lonicera japonica HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 44.4
Medtr8g006790 Medicago truncatula HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 44.4
Phvul.003G193800 Phaseolus vulgaris HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 43.1
Potri.012G071600 Populus trichocarpa HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 43.1
QL10p014974 Quercus lobata HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 43.1
TAR629G2030 Trochodendron aralioides HOM05D000263 ORTHO05D000213 8.1e-06 54.7 51 54.9
HPP92_015372 Vanilla planifolia HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 44.4
VMungo1215G3019 Vigna mungo HOM05D000263 ORTHO05D000213 8.1e-06 54.7 72 43.1


User provided reference genes

Program Settings