Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0203141 Helianthus annuus HOM05D005937 ORTHO05D008151 0.0e+00 1746.9 872 100.0
Lsat_1_v5_gn_2_123720 Lactuca sativa HOM05D005937 ORTHO05D008151 0.0e+00 1394.4 831 81.2
ECA238G3710 Erigeron canadensis HOM05D005937 ORTHO05D008151 0.0e+00 1365.1 874 79.5
Actinidia00667 Actinidia chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1172.5 876 69.1
Nitab4.5_0000058g0250 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1145.2 873 66.1
Atru.chr12.85 Acer truncatum HOM05D005937 ORTHO05D008151 0.0e+00 1140.6 888 65.2
Nitab4.5_0000969g0030 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1138.6 875 65.8
CSS0046957 Camellia sinensis var. sinensis HOM05D005937 ORTHO05D008151 0.0e+00 1137.5 901 66.7
GSVIVG01032777001 Vitis vinifera HOM05D005937 ORTHO05D008151 0.0e+00 1131.3 881 65.8
CAN.G19.18 Capsicum annuum HOM05D005937 ORTHO05D008151 0.0e+00 1129.8 877 66.1
Rhsim09G0179300 Rhododendron simsii HOM05D005937 ORTHO05D008151 0.0e+00 1129.0 891 66.3
Sopen06g016900 Solanum pennellii HOM05D005937 ORTHO05D008151 0.0e+00 1129.0 884 65.4
Solyc06g051080.4 Solanum lycopersicum HOM05D005937 ORTHO05D008151 0.0e+00 1123.2 886 65.2
Ciclev10030686m.g Citrus clementina HOM05D005937 ORTHO05D008151 0.0e+00 1122.5 881 65.8
TAR633G1521 Trochodendron aralioides HOM05D005937 ORTHO05D008151 0.0e+00 1116.7 882 66.1
Duzib114G0783 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1116.3 884 64.5
Potri.010G185800 Populus trichocarpa HOM05D005937 ORTHO05D008151 0.0e+00 1115.1 886 63.5
MD07G1224900 Malus domestica HOM05D005937 ORTHO05D008151 0.0e+00 1109.0 884 65.2
Thecc.10G012700 Theobroma cacao HOM05D005937 ORTHO05D008151 0.0e+00 1104.7 878 64.9
CiPaw.02G194600 Carya illinoinensis HOM05D005937 ORTHO05D008151 0.0e+00 1104.4 885 63.5
FvH4_7g24830 Fragaria vesca HOM05D005937 ORTHO05D008151 0.0e+00 1104.0 824 65.8
FAN01G2918 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1103.6 876 63.6
FAN06G2004 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1102.4 821 65.9
Gorai.011G291300 Gossypium raimondii HOM05D005937 ORTHO05D008151 0.0e+00 1098.2 862 65.2
Hma1.2p1_0523F.1_g172080 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 0.0e+00 1097.0 819 65.4
RcHm_v2.0_Chr1g0370701 Rosa chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1096.3 876 63.7
QL08p063536 Quercus lobata HOM05D005937 ORTHO05D008151 0.0e+00 1095.9 880 64.3
Migut.F01477 Erythranthe guttata HOM05D005937 ORTHO05D008151 0.0e+00 1094.3 885 63.2
TWI09G1402 Tripterygium wilfordii HOM05D005937 ORTHO05D008151 0.0e+00 1093.6 889 63.7
Haze_17256 Corylus avellana HOM05D005937 ORTHO05D008151 0.0e+00 1093.2 824 66.0
Gohir.A10G239000 Gossypium hirsutum HOM05D005937 ORTHO05D008151 0.0e+00 1088.9 826 66.7
Manes.10G010100 Manihot esculenta HOM05D005937 ORTHO05D008151 0.0e+00 1088.2 884 64.3
Eucgr.J00183 Eucalyptus grandis HOM05D005937 ORTHO05D008151 0.0e+00 1085.9 826 64.3
Lj1C959G18 Lonicera japonica HOM05D005937 ORTHO05D008151 0.0e+00 1085.9 757 71.1
Hund15900 Selenicereus undatus HOM05D005937 ORTHO05D008151 0.0e+00 1082.8 885 61.6
Oeu011112.1 Olea europaea HOM05D005937 ORTHO05D008151 0.0e+00 1079.7 967 59.8
FAN03G2902 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1078.9 877 63.2
Nn2g10945 Nelumbo nucifera HOM05D005937 ORTHO05D008151 1.2e-311 1072.8 890 63.3
Prupe.2G253500 Prunus persica HOM05D005937 ORTHO05D008151 1.2e-311 1072.8 884 62.9
Sabra10G0143100 Salix brachista HOM05D005937 ORTHO05D008151 1.2e-311 1072.8 893 60.6
CANSAT56G2579 Cannabis sativa HOM05D005937 ORTHO05D008151 1.6e-310 1069.3 886 61.9
Ah.16g103770 Amaranthus hybridus HOM05D005937 ORTHO05D008151 1.1e-308 1063.1 890 60.6
Dinv21757 Davidia involucrata HOM05D005937 ORTHO05D008151 4.2e-308 1061.2 892 63.2
EL10Ac2g04871 Beta vulgaris HOM05D005937 ORTHO05D008151 1.0e-306 1056.6 925 58.2
Duzib106G1087 Durio zibethinus HOM05D005937 ORTHO05D008151 2.0e-305 1052.4 888 63.0
DCAR_024814 Daucus carota HOM05D005937 ORTHO05D008151 2.2e-304 1048.9 807 66.0
Lalb_Chr23g0277021 Lupinus albus HOM05D005937 ORTHO05D008151 4.8e-304 1047.7 894 58.9
Medtr3g071440 Medicago truncatula HOM05D005937 ORTHO05D008151 4.8e-304 1047.7 881 61.2
vmacro10023 Vaccinium macrocarpon HOM05D005937 ORTHO05D008151 5.3e-303 1044.3 919 60.5
Aqoxy4G02431 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 3.5e-302 1041.6 826 64.4
Ca_15144_v3 Cicer arietinum L. HOM05D005937 ORTHO05D008151 3.8e-301 1038.1 888 60.5
Psat5g130440 Pisum sativum HOM05D005937 ORTHO05D008151 1.1e-300 1036.6 819 63.7
CsaV3_6G001960 Cucumis sativus L. HOM05D005937 ORTHO05D008151 1.5e-300 1036.2 820 61.5
AL5G37310 Arabidopsis lyrata HOM05D005937 ORTHO05D008151 1.9e-300 1035.8 850 60.9
ClCG11G006010 Citrullus lanatus HOM05D005937 ORTHO05D008151 3.2e-300 1035.0 821 61.6
TPR.G10616 Trifolium pratense HOM05D005937 ORTHO05D008151 5.5e-300 1034.2 870 61.0
Aa31LG10G10960 Aethionema arabicum HOM05D005937 ORTHO05D008151 7.2e-300 1033.9 836 61.6
AT3G56040 Arabidopsis thaliana HOM05D005937 ORTHO05D008151 9.4e-300 1033.5 865 60.5
CARHR166110 Cardamine hirsuta HOM05D005937 ORTHO05D008151 1.2e-299 1033.1 876 60.2
Glyma.11G231700 Glycine max HOM05D005937 ORTHO05D008151 4.0e-298 1028.1 818 62.6
Carub.0005s2277 Capsella rubella HOM05D005937 ORTHO05D008151 2.6e-297 1025.4 883 59.1
Sed0020446 Sechium edule HOM05D005937 ORTHO05D008151 1.3e-296 1023.1 835 61.0
Sp5g06500 Schrenkiella parvula HOM05D005937 ORTHO05D008151 2.8e-296 1021.9 892 58.4
A09p48990 Brassica napus HOM05D005937 ORTHO05D008151 4.8e-296 1021.1 883 59.5
BraA09t40354Z Brassica rapa HOM05D005937 ORTHO05D008151 4.8e-296 1021.1 883 59.5
Thhalv10005783m.g Eutrema salsugineum HOM05D005937 ORTHO05D008151 1.4e-295 1019.6 879 59.3
Phvul.001G244900 Phaseolus vulgaris HOM05D005937 ORTHO05D008151 9.1e-295 1016.9 878 58.2
C08p31350 Brassica napus HOM05D005937 ORTHO05D008151 1.2e-294 1016.5 883 58.9
Glyma.18G025500 Glycine max HOM05D005937 ORTHO05D008151 1.6e-294 1016.1 874 60.1
Lj6g0019628 Lotus japonicus HOM05D005937 ORTHO05D008151 1.3e-293 1013.1 858 61.4
Cpa.g.sc19.149 Carica papaya HOM05D005937 ORTHO05D008151 1.7e-293 1012.7 924 58.2
PSO017G4998 Papaver somniferum HOM05D005937 ORTHO05D008151 3.8e-293 1011.5 838 61.7
PSO170G3027 Papaver somniferum HOM05D005937 ORTHO05D008151 5.0e-293 1011.1 841 61.7
FAN10G1632 Fragaria x ananassa HOM05D005937 ORTHO05D008151 2.5e-292 1008.8 845 62.7
arahy.Tifrunner.gnm1.ann1.6RBS9T Arachis hypogaea HOM05D005937 ORTHO05D008151 4.2e-292 1008.1 831 60.2
arahy.Tifrunner.gnm1.ann1.0WF02T Arachis hypogaea HOM05D005937 ORTHO05D008151 5.5e-292 1007.7 831 60.0
THA.LOC104824329 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 6.1e-291 1004.2 879 58.1
AUR62012278 Chenopodium quinoa HOM05D005937 ORTHO05D008151 3.0e-290 1001.9 820 59.9
THA.LOC104811372 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 4.0e-290 1001.5 896 57.9
VMungo1383G1379 Vigna mungo HOM05D005937 ORTHO05D008151 2.8e-288 995.3 868 59.4
Peaxi162Scf00284g00620 Petunia axillaris HOM05D005937 ORTHO05D008151 9.2e-287 990.3 885 60.0
unitig_60.g25670 Utricularia gibba HOM05D005937 ORTHO05D008151 2.0e-286 989.2 829 59.5
Cfa001293 Carpinus fangiana HOM05D005937 ORTHO05D008151 6.6e-277 957.6 662 70.7
ATR0174G021 Amborella trichopoda HOM05D005937 ORTHO05D008151 4.3e-276 954.9 880 56.0
Gohir.D10G250900 Gossypium hirsutum HOM05D005937 ORTHO05D008151 1.2e-275 953.4 734 66.5
Os05g0468600 Oryza sativa ssp. japonica HOM05D005937 ORTHO05D008151 4.7e-275 951.4 805 57.1
PGR044G1548 Punica granatum HOM05D005937 ORTHO05D008151 8.0e-275 950.7 867 57.2
AUR62022920 Chenopodium quinoa HOM05D005937 ORTHO05D008151 2.6e-273 945.7 742 62.1
Cc02_g06180 Coffea canephora HOM05D005937 ORTHO05D008151 8.3e-272 940.6 642 71.3
Zm00001eb351780 Zea mays HOM05D005937 ORTHO05D008151 7.3e-268 927.5 849 53.8
MELO3C008313.2 Cucumis melo HOM05D005937 ORTHO05D008151 8.6e-261 904.0 712 62.5
Sc10g0002520 Simmondsia chinensis HOM05D005937 ORTHO05D008151 1.2e-257 893.6 713 63.7
COL.COLO4_25772 Corchorus olitorius HOM05D005937 ORTHO05D008151 1.1e-252 877.1 791 60.1
MBI15_g40751_MAGBIO Magnolia biondii HOM05D005937 ORTHO05D008151 5.6e-252 874.8 911 53.6
MD01G1156200 Malus domestica HOM05D005937 ORTHO05D008151 4.0e-242 842.0 699 60.8
SGA_v2.0_scaffold395G50730 Striga asiatica HOM05D005937 ORTHO05D008151 2.9e-240 835.9 739 60.2
Mapoly0007s0127 Marchantia polymorpha HOM05D005937 ORTHO05D008151 7.1e-239 831.2 874 48.2
AagrBONN_evm.TU.Sc2ySwM_368.2798 Anthoceros agrestis HOM05D005937 ORTHO05D008151 1.5e-236 823.5 863 49.2
Pp3c22_15610 Physcomitrium patens HOM05D005937 ORTHO05D008151 2.2e-232 809.7 912 48.5
SMO141G0067 Selaginella moellendorffii HOM05D005937 ORTHO05D008151 5.5e-215 751.9 748 50.3
HPP92_007567 Vanilla planifolia HOM05D005937 ORTHO05D008151 2.0e-196 690.3 792 50.3
Hma1.2p1_0523F.1_g172070 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 1.5e-188 664.1 517 65.6
CBR_g61489 Chara braunii HOM05D005937 ORTHO05D008151 1.7e-187 660.6 608 51.2
Actinidia00964 Actinidia chinensis HOM05D005937 ORTHO05D008151 1.4e-170 604.4 480 63.3
PRCOL_00004696 Prasinoderma coloniale HOM05D005937 ORTHO05D008151 1.2e-153 548.1 682 43.0
Cre12.g554250 Chlamydomonas reinhardtii HOM05D005937 ORTHO05D008151 1.4e-146 524.6 813 38.6
CDE04G2743 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 3.0e-144 516.9 615 48.5
HPP92_007578 Vanilla planifolia HOM05D005937 ORTHO05D008151 1.5e-116 424.9 408 55.9
RhsimUnG0153700 Rhododendron simsii HOM05D005937 ORTHO05D008151 5.5e-106 389.8 299 65.9
BcaB01g00040 Brassica carinata HOM05D005937 ORTHO05D008151 2.1e-105 387.9 406 53.9
Rhsim12G0073000 Rhododendron simsii HOM05D005937 ORTHO05D008151 2.9e-99 367.5 298 63.4
CDE04G2646 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 1.5e-87 328.6 246 62.6
Aqoxy1G01260 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 3.7e-86 323.9 192 77.6
Aqoxy2G01148 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 4.8e-86 323.6 188 78.7
Aqoxy4G01451 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 3.1e-85 320.9 186 79.0
SEGI_34891 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 1.2e-84 318.9 245 62.4
HPP92_007579 Vanilla planifolia HOM05D005937 ORTHO05D008151 2.0e-71 275.0 217 60.8
MCO05G015 Micromonas commoda HOM05D005937 ORTHO05D008151 4.5e-68 263.8 383 38.1
BolC8t50756H Brassica oleracea HOM05D005937 ORTHO05D008151 9.1e-61 239.6 201 55.2
Ah.00g001390 Amaranthus hybridus HOM05D005937 ORTHO05D008151 1.3e-38 166.0 147 51.7
SEGI_09306 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 1.3e-35 156.0 131 51.1
Aqoxy4G01461 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 2.3e-32 145.2 182 47.3
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 2.6e-23 115.2 194 35.1
Aqoxy4G00767 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 5.8e-15 87.4 92 54.3
SEGI_37602 Sequoiadendron giganteum HOM05D005937 ORTHO05D026713 3.5e-12 78.2 184 32.1
Rhsim12G0072900 Rhododendron simsii HOM05D005937 ORTHO05D008151 5.1e-11 74.3 53 71.7
Hund15853 Selenicereus undatus HOM05D005937 ORTHO05D026713 1.3e-09 69.7 112 39.3


User provided reference genes

Program Settings