Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 9.3e-270 932.9 467 100.0
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.2e-211 740.0 464 79.3
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 7.3e-182 641.0 448 70.1
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.2e-171 607.1 476 65.1
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 5.8e-171 604.7 467 65.5
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.4e-169 600.1 466 65.2
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 3.5e-168 595.5 471 64.3
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.5e-168 595.5 466 64.8
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.5e-168 595.5 468 64.7
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.0e-168 594.7 466 64.8
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 1.1e-166 590.5 458 65.1
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 1.5e-166 590.1 469 64.0
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 4.3e-166 588.6 467 64.5
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 8.1e-165 584.3 468 64.1
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 1.8e-164 583.2 464 64.7
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.5e-163 580.1 464 63.8
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.5e-163 580.1 464 63.6
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 2.0e-163 579.7 467 62.5
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.3e-162 577.0 449 64.4
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.3e-162 577.0 468 63.2
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.2e-162 576.2 464 63.1
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 3.8e-162 575.5 469 63.5
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 4.9e-162 575.1 467 63.6
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 4.9e-162 575.1 468 63.5
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.1e-161 573.9 467 62.3
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 1.4e-161 573.5 472 62.3
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.9e-161 573.2 466 62.4
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.4e-161 572.8 472 60.4
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 4.2e-161 572.0 447 64.0
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.4e-161 571.6 469 62.3
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 9.3e-161 570.9 465 61.9
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.6e-160 570.1 464 63.1
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.1e-160 569.7 468 62.4
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.1e-160 569.7 468 62.4
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 2.7e-160 569.3 463 63.9
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 3.5e-160 568.9 471 60.9
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 2.3e-159 566.2 470 60.9
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 3.9e-159 565.5 470 61.5
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 5.1e-159 565.1 466 60.9
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 8.7e-159 564.3 469 60.1
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.5e-158 563.5 474 61.8
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 9.6e-158 560.8 471 59.7
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 1.6e-157 560.1 474 61.2
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.1e-157 559.7 471 61.4
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 2.1e-157 559.7 469 61.0
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 6.2e-157 558.1 464 63.4
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 6.2e-157 558.1 469 60.6
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 8.1e-157 557.8 466 60.9
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 4.0e-156 555.4 469 60.6
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.3e-156 555.1 471 61.6
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 5.3e-156 555.1 469 61.2
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 1.5e-155 553.5 469 59.9
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 3.4e-155 552.4 467 59.7
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 6.4e-154 548.1 471 59.2
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.1e-153 544.7 467 59.5
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 7.1e-153 544.7 472 60.2
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.6e-152 543.5 467 59.1
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.1e-152 543.1 469 59.3
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 2.1e-152 543.1 469 58.6
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 3.5e-152 542.3 467 58.9
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 5.1e-151 538.5 460 58.7
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.5e-150 536.2 458 59.2
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 4.8e-149 531.9 466 59.2
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 4.0e-148 528.9 447 60.6
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.0e-148 528.9 458 58.7
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 2.6e-147 526.2 471 58.2
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 7.1e-145 518.1 457 59.5
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 7.1e-145 518.1 476 56.3
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.6e-144 516.9 459 57.7
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 2.1e-144 516.5 458 57.4
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.8e-143 513.5 464 57.1
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.7e-142 508.4 466 56.9
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.4e-140 503.8 471 55.6
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.4e-140 503.8 469 56.9
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 3.1e-140 502.7 457 56.5
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 5.8e-139 498.4 466 55.6
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 6.1e-136 488.4 468 55.3
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 3.0e-135 486.1 464 54.3
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 5.1e-135 485.3 464 56.5
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 5.7e-134 481.9 471 54.8
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 7.4e-134 481.5 390 60.5
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 2.2e-133 479.9 470 53.8
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 3.7e-133 479.2 472 52.5
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 8.2e-133 478.0 474 53.0
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.4e-132 476.5 471 52.7
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.7e-130 470.3 466 53.0
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 8.5e-130 468.0 467 53.3
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 8.5e-130 468.0 467 53.5
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.4e-129 467.2 401 58.4
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.9e-129 466.8 467 53.3
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.2e-129 466.1 470 51.7
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 4.2e-129 465.7 471 50.7
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 4.6e-128 462.2 466 52.1
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.9e-127 459.1 463 51.6
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 3.9e-127 459.1 467 51.8
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.1e-126 457.6 464 52.2
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.0e-126 456.8 463 51.6
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 4.3e-126 455.7 463 51.6
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 7.4e-126 454.9 463 51.2
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.3e-125 454.1 460 52.2
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 2.8e-125 453.0 462 51.3
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 3.7e-125 452.6 462 50.9
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 6.3e-125 451.8 463 50.5
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 6.3e-125 451.8 463 50.5
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 8.2e-125 451.4 462 50.0
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 8.2e-125 451.4 464 51.3
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-124 451.1 462 50.0
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.4e-124 450.7 462 51.5
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.1e-124 449.5 468 51.3
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 4.1e-124 449.1 466 50.4
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 4.1e-124 449.1 463 50.1
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 2.0e-123 446.8 462 50.4
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 2.6e-123 446.4 462 51.3
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.4e-123 446.0 463 51.0
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 3.4e-123 446.0 462 50.9
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 4.5e-123 445.7 462 50.6
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 4.5e-123 445.7 311 71.1
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 4.5e-123 445.7 311 71.1
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 8.5e-122 441.4 462 50.6
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 8.5e-122 441.4 462 50.6
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 8.5e-122 441.4 445 50.8
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.1e-121 441.0 466 49.1
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.4e-121 440.7 463 49.9
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 1.9e-121 440.3 460 51.3
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 2.5e-121 439.9 460 51.1
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 2.5e-121 439.9 460 51.1
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 3.2e-121 439.5 463 49.5
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 3.2e-121 439.5 458 51.1
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-120 437.2 460 51.1
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 2.1e-120 436.8 466 49.4
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 1.8e-119 433.7 475 47.4
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.0e-119 433.0 460 50.4
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 3.0e-119 433.0 470 48.7
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 3.9e-119 432.6 459 49.9
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 8.8e-119 431.4 470 48.5
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.1e-118 431.0 466 48.1
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 2.0e-118 430.3 470 50.4
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 7.4e-118 428.3 469 48.0
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 2.2e-117 426.8 470 48.1
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 3.7e-117 426.0 461 49.5
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 8.2e-117 424.9 464 47.4
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 1.4e-116 424.1 448 49.1
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 4.1e-116 422.5 468 48.3
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 1.7e-114 417.2 463 49.7
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 3.2e-113 412.9 452 49.8
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.8e-111 407.1 420 50.2
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.4e-108 396.7 435 48.5
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.4e-102 376.3 434 46.5
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.3e-101 374.4 434 45.2
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.2e-101 373.6 434 46.5
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.0e-98 362.5 434 44.5
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.0e-90 338.2 430 42.6
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.7e-85 320.9 460 41.5
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 3.9e-82 309.7 351 49.6
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.4e-71 274.6 340 48.2
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.2e-69 267.3 341 41.1
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.2e-62 245.0 211 58.3
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.7e-61 241.1 202 56.9
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 2.2e-61 240.7 202 56.9
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 2.4e-60 237.3 205 61.5
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.0e-50 203.8 211 52.1
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 2.8e-48 197.2 163 62.0
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 1.9e-41 174.5 219 44.7
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 8.4e-37 159.1 273 36.6
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 5.1e-26 123.2 137 43.1
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 7.2e-20 102.8 282 32.6
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 2.3e-18 97.8 122 46.7
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 9.0e-15 85.9 87 51.7
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 8.5e-13 79.3 89 49.4
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.6e-11 75.1 95 38.9
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 1.2e-06 58.9 139 32.4
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 7.7e-06 56.2 89 38.2


User provided reference genes

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