Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 3.1e-188 661.8 357 100.0
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 4.3e-142 508.4 343 77.0
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 8.7e-135 484.2 346 73.4
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 3.7e-133 478.8 345 73.6
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.4e-132 476.9 346 71.4
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 3.4e-131 472.2 346 67.6
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 3.4e-131 472.2 344 68.0
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 1.3e-130 470.3 345 72.5
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.3e-130 470.3 346 71.7
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 1.3e-130 470.3 339 73.7
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.7e-130 469.9 347 67.1
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.8e-130 468.8 343 67.3
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.5e-130 468.0 346 70.2
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 8.5e-130 467.6 347 69.7
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 4.2e-129 465.3 347 69.5
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 7.2e-129 464.5 346 67.6
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 9.3e-129 464.2 344 73.0
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 1.2e-128 463.8 340 73.8
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 4.6e-128 461.8 349 65.6
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.1e-128 461.5 346 70.8
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 6.1e-128 461.5 346 64.7
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 1.3e-127 460.3 349 71.1
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 1.8e-127 459.9 344 66.3
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 3.0e-127 459.1 349 66.5
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 5.1e-127 458.4 345 66.7
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.7e-127 457.6 341 66.6
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 8.7e-127 457.6 341 67.7
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 1.5e-126 456.8 346 67.9
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 1.5e-126 456.8 347 66.6
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 2.5e-126 456.1 344 67.2
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 2.5e-126 456.1 346 70.2
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 3.3e-126 455.7 346 66.2
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 7.4e-126 454.5 345 68.7
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.6e-125 453.4 348 68.4
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.6e-125 453.4 348 68.4
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 4.8e-125 451.8 347 68.6
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 6.3e-125 451.4 345 67.8
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 6.3e-125 451.4 343 65.6
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 6.3e-125 451.4 343 67.6
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 1.4e-124 450.3 344 67.4
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-124 450.3 357 65.0
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.4e-124 450.3 339 67.8
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.4e-124 449.5 345 67.8
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 4.1e-124 448.7 339 66.1
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 6.9e-124 448.0 346 63.6
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 9.1e-124 447.6 344 64.8
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 1.5e-123 446.8 359 61.6
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 1.5e-123 446.8 345 64.1
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 5.9e-123 444.9 348 65.5
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 5.9e-123 444.9 359 63.0
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 1.3e-122 443.7 344 64.0
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.7e-122 443.4 341 67.7
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 5.0e-122 441.8 348 65.2
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 5.0e-122 441.8 344 69.2
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.9e-121 439.9 347 66.0
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 2.5e-121 439.5 346 68.5
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.5e-121 439.5 346 64.2
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.4e-121 437.6 344 65.4
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 9.4e-121 437.6 348 65.5
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 1.2e-120 437.2 344 66.6
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.2e-120 437.2 344 68.9
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 1.6e-120 436.8 347 63.1
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.7e-120 436.0 346 65.9
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 3.6e-120 435.6 344 66.3
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 7.9e-120 434.5 342 65.2
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.4e-119 433.7 346 65.3
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.8e-119 433.3 358 60.6
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.3e-119 433.0 344 65.7
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 3.9e-119 432.2 346 65.9
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.1e-119 431.8 344 65.1
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.0e-118 429.9 341 66.9
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 5.7e-118 428.3 346 68.5
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 9.7e-118 427.6 339 65.2
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 9.7e-118 427.6 340 64.4
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 3.7e-117 425.6 344 68.3
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 6.3e-117 424.9 365 59.2
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 8.2e-117 424.5 344 67.2
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.8e-116 423.3 339 64.6
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.8e-116 423.3 347 67.4
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.4e-116 422.9 339 64.6
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 4.1e-116 422.2 341 60.1
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 9.1e-116 421.0 347 66.9
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 9.1e-116 421.0 347 66.9
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.2e-115 420.6 339 64.9
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.2e-114 416.4 342 62.0
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.1e-113 414.1 349 59.3
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 9.4e-113 411.0 345 59.4
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 9.4e-113 411.0 340 60.9
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 2.7e-112 409.5 350 62.9
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.3e-111 406.4 346 63.6
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 3.3e-110 402.5 446 50.4
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 5.7e-110 401.7 346 63.0
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 5.7e-110 401.7 348 64.4
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 7.4e-110 401.4 328 62.5
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 9.7e-110 401.0 345 58.8
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 3.7e-109 399.1 346 57.8
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 8.2e-109 397.9 306 65.4
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.1e-108 397.5 339 55.5
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 1.4e-108 397.1 348 63.5
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 1.6e-107 393.7 354 55.4
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 5.9e-107 391.7 340 61.8
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 5.9e-107 391.7 350 65.1
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 5.9e-107 391.7 342 58.5
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.9e-106 389.4 338 57.4
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 3.8e-106 389.0 346 61.0
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 8.5e-106 387.9 347 55.9
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.1e-105 387.5 348 62.9
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.1e-105 387.5 340 60.3
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.1e-105 387.5 347 63.1
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.5e-105 387.1 367 59.1
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.5e-105 386.3 345 58.0
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 4.2e-105 385.6 351 59.3
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 9.4e-105 384.4 346 56.9
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 9.4e-105 384.4 347 54.8
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.6e-104 383.6 253 72.7
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 3.6e-104 382.5 360 55.0
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 1.0e-103 380.9 347 62.2
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 4.0e-103 379.0 306 66.0
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 5.2e-103 378.6 346 61.0
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 5.2e-103 378.6 346 58.4
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 8.8e-103 377.9 344 56.1
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 1.5e-102 377.1 346 57.5
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.5e-102 377.1 346 55.5
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.8e-101 372.9 338 53.6
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.1e-100 370.9 338 54.4
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 2.7e-99 366.3 293 67.9
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 6.5e-98 361.7 346 51.7
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 1.1e-97 360.9 341 57.2
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 7.2e-97 358.2 345 53.3
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 4.7e-96 355.5 337 56.7
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 8.0e-96 354.8 291 67.7
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.7e-93 347.1 425 50.6
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 7.0e-92 341.7 357 59.1
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 7.0e-92 341.7 298 60.7
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 4.4e-86 322.4 300 65.3
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 4.5e-83 312.4 301 55.8
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 2.8e-80 303.1 292 55.5
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 1.0e-79 301.2 243 62.1
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 4.0e-79 299.3 335 44.2
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 4.4e-78 295.8 245 61.6
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 7.5e-78 295.0 261 62.1
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 2.2e-77 293.5 186 75.3
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 2.4e-76 290.0 338 42.9
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 2.0e-75 287.0 276 55.4
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.6e-75 285.8 344 46.8
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.0e-74 283.1 237 63.7
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 5.0e-74 282.3 338 40.5
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.1e-73 281.2 290 53.1
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.2e-72 277.7 283 53.0
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 5.2e-71 272.3 347 40.9
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 1.2e-70 271.2 244 59.4
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 1.4e-68 264.2 224 62.5
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 1.0e-66 258.1 262 50.4
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 4.3e-65 252.7 253 50.2
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 2.9e-61 240.0 243 52.3
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 4.9e-61 239.2 243 58.4
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.4e-60 236.9 254 46.9
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 2.4e-60 236.9 336 43.2
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 4.1e-60 236.1 249 49.0
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 1.2e-56 224.6 246 49.2
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 4.7e-56 222.6 144 70.1
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.7e-51 206.8 129 73.6
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.6e-42 175.6 140 64.3
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 2.4e-39 167.2 102 74.5
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 3.8e-37 159.8 138 62.3
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.6e-35 152.9 115 67.8
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.9e-35 152.1 112 67.9
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 7.9e-27 125.6 116 56.9
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.4e-23 114.0 65 73.8
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 5.3e-23 112.8 344 25.0
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 4.5e-22 109.8 145 37.2
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 4.3e-17 93.2 54 68.5
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.1e-15 86.7 54 77.8
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 4.5e-14 83.2 217 26.3
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 7.2e-12 75.9 97 42.3
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 5.3e-07 59.7 38 78.9
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 3.4e-06 57.0 103 35.9


User provided reference genes

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