Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 6.6e-108 394.0 197 100.0
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 1.5e-83 313.2 197 79.7
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 2.8e-82 308.9 197 78.7
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 2.5e-67 259.2 159 75.5
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 9.6e-67 257.3 190 64.2
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 9.6e-67 257.3 162 73.5
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 1.3e-66 256.9 155 75.5
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 4.8e-66 255.0 153 75.8
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 8.1e-66 254.2 156 73.1
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 1.1e-65 253.8 162 71.6
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 1.4e-65 253.4 164 73.2
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 1.8e-65 253.1 155 73.5
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 2.4e-65 252.7 147 78.2
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 2.4e-65 252.7 157 73.9
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 2.4e-65 252.7 162 72.2
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 3.1e-65 252.3 174 68.4
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 6.9e-65 251.1 156 73.7
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 6.9e-65 251.1 148 77.0
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 1.2e-64 250.4 164 68.9
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 1.5e-64 250.0 162 72.2
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 1.5e-64 250.0 167 68.3
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 1.5e-64 250.0 157 73.9
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 2.6e-64 249.2 158 73.4
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 4.4e-64 248.4 157 72.0
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 5.8e-64 248.1 176 67.6
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 5.8e-64 248.1 162 71.0
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 5.8e-64 248.1 163 68.1
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 5.8e-64 248.1 164 67.7
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 7.6e-64 247.7 171 70.2
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 7.6e-64 247.7 166 69.9
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 7.6e-64 247.7 162 67.9
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 9.9e-64 247.3 148 75.7
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 1.3e-63 246.9 157 71.3
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 1.3e-63 246.9 160 73.1
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 1.3e-63 246.9 164 67.7
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 1.3e-63 246.9 163 67.5
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 1.7e-63 246.5 157 71.3
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 2.2e-63 246.1 157 72.0
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 2.2e-63 246.1 157 72.0
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 2.2e-63 246.1 162 71.0
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 2.2e-63 246.1 162 67.3
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 3.8e-63 245.4 156 71.2
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 3.8e-63 245.4 165 67.9
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 6.4e-63 244.6 160 71.9
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 6.4e-63 244.6 157 72.6
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 8.4e-63 244.2 151 75.5
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 8.4e-63 244.2 151 75.5
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 1.4e-62 243.4 167 67.7
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 1.4e-62 243.4 167 68.3
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 1.9e-62 243.0 146 76.7
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 3.2e-62 242.3 148 74.3
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 3.2e-62 242.3 157 69.4
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 4.2e-62 241.9 170 68.2
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 4.2e-62 241.9 156 67.3
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 5.4e-62 241.5 186 63.4
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 5.4e-62 241.5 154 70.8
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 5.4e-62 241.5 157 70.7
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 7.1e-62 241.1 161 67.7
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 7.1e-62 241.1 176 66.5
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 9.3e-62 240.7 176 65.9
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 9.3e-62 240.7 150 72.7
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 1.2e-61 240.4 150 73.3
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 1.2e-61 240.4 150 74.7
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.6e-61 240.0 151 74.8
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.1e-61 239.6 151 74.2
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 2.7e-61 239.2 159 70.4
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 3.5e-61 238.8 150 74.0
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 4.6e-61 238.4 155 70.3
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 6.0e-61 238.0 156 67.9
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 6.0e-61 238.0 156 67.9
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 1.1e-59 233.8 154 67.5
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 1.5e-59 233.4 170 65.3
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 1.5e-59 233.4 163 67.5
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 1.9e-59 233.0 149 69.1
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 4.3e-59 231.9 151 70.2
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 5.6e-59 231.5 164 67.7
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 7.3e-59 231.1 148 70.9
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 9.6e-59 230.7 156 65.4
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 2.1e-58 229.6 205 57.1
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 4.8e-58 228.4 150 70.0
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 8.1e-58 227.6 160 68.1
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 1.8e-57 226.5 141 71.6
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 3.1e-57 225.7 156 69.9
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 9.0e-57 224.2 149 70.5
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 5.8e-56 221.5 148 70.3
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 2.2e-55 219.5 174 62.1
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 1.4e-54 216.9 163 64.4
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 5.1e-52 208.4 190 56.3
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 5.6e-51 204.9 152 61.2
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 4.9e-47 191.8 115 76.5
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 1.9e-46 189.9 115 76.5
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 2.5e-46 189.5 148 59.5
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 4.2e-46 188.7 132 66.7
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 1.2e-45 187.2 160 60.0
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 7.9e-45 184.5 129 65.1
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 8.7e-44 181.0 115 68.7
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 8.7e-44 181.0 183 50.3
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 8.7e-44 181.0 151 57.6
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 1.5e-43 180.3 168 54.8
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 1.0e-36 157.5 157 50.3
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 6.7e-36 154.8 149 53.7
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 2.2e-34 149.8 95 70.5
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-31 139.0 92 67.4
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.7e-29 132.9 87 73.6
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 3.0e-28 129.4 114 54.4
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 2.2e-26 123.2 77 72.7
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 2.9e-23 112.8 67 76.1
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 3.6e-13 79.3 60 58.3
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 8.2e-10 68.2 46 71.7
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 8.2e-10 68.2 50 58.0
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 9.1e-09 64.7 33 81.8
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 9.1e-09 64.7 43 62.8
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 3.5e-08 62.8 79 44.3
Lsat_1_v5_gn_1_101101 Lactuca sativa HOM05D000608 ORTHO05D000444 3.5e-08 62.8 44 72.7
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 3.5e-08 62.8 44 72.7
Lsat_1_v5_gn_6_105821 Lactuca sativa HOM05D003479 ORTHO05D016156 3.5e-08 62.8 44 72.7
Lsat_1_v5_gn_6_85640 Lactuca sativa HOM05D031160 ORTHO05D016156 3.5e-08 62.8 44 72.7
Lsat_1_v5_gn_7_75700 Lactuca sativa HOM05D031160 ORTHO05D016156 3.5e-08 62.8 44 72.7
Lsat_1_v5_gn_8_60120 Lactuca sativa HOM05D003479 ORTHO05D016156 3.5e-08 62.8 44 72.7
Lsat_1_v5_gn_9_35960 Lactuca sativa HOM05D031160 ORTHO05D016156 3.5e-08 62.8 44 72.7
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 1.5e-06 57.4 51 51.0


User provided reference genes

Program Settings