Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 2.0e-80 302.4 149 100.0
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 1.6e-69 266.2 149 87.2
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 4.7e-66 254.6 151 83.4
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 3.6e-58 228.4 148 68.9
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 8.0e-58 227.3 149 73.8
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 4.0e-57 224.9 149 71.1
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 3.4e-56 221.9 148 69.6
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 5.7e-56 221.1 149 70.5
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 3.7e-55 218.4 149 69.1
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 1.4e-54 216.5 149 66.4
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 1.4e-54 216.5 149 66.4
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 1.4e-54 216.5 149 71.1
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 4.1e-54 214.9 149 67.8
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 4.1e-54 214.9 149 67.8
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 4.1e-54 214.9 149 67.1
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 7.0e-54 214.2 149 67.8
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 7.0e-54 214.2 147 71.4
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 1.6e-53 213.0 149 65.8
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 1.6e-53 213.0 149 65.1
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 2.7e-53 212.2 147 68.7
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 3.5e-53 211.8 149 66.4
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 6.0e-53 211.1 150 70.0
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 7.8e-53 210.7 149 66.4
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 7.8e-53 210.7 147 67.3
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 1.0e-52 210.3 149 69.1
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 1.0e-52 210.3 149 64.4
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 1.3e-52 209.9 172 59.3
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 2.3e-52 209.1 149 67.8
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 2.3e-52 209.1 147 66.7
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 3.0e-52 208.8 149 64.4
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 3.0e-52 208.8 149 64.4
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 3.0e-52 208.8 149 67.1
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 3.0e-52 208.8 168 61.9
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 5.0e-52 208.0 145 66.2
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 6.6e-52 207.6 149 64.4
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 6.6e-52 207.6 149 67.1
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 6.6e-52 207.6 149 66.4
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 8.6e-52 207.2 137 70.1
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 8.6e-52 207.2 149 64.4
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 8.6e-52 207.2 149 64.4
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 8.6e-52 207.2 149 65.8
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.1e-51 206.8 172 58.1
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 2.5e-51 205.7 149 64.4
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 2.5e-51 205.7 149 67.1
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 4.3e-51 204.9 147 66.0
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 7.3e-51 204.1 149 63.8
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 9.5e-51 203.8 149 63.1
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 2.8e-50 202.2 149 63.1
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 2.8e-50 202.2 147 65.3
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 2.8e-50 202.2 147 64.6
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 6.2e-50 201.1 149 62.4
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 8.0e-50 200.7 149 62.4
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 1.4e-49 199.9 214 50.0
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 1.4e-49 199.9 149 62.4
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 1.8e-49 199.5 149 63.1
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 1.8e-49 199.5 147 64.6
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 3.1e-49 198.7 186 54.8
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 4.0e-49 198.4 149 62.4
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 6.8e-49 197.6 149 61.7
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 6.8e-49 197.6 172 59.9
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 8.9e-49 197.2 149 61.7
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 8.9e-49 197.2 149 62.4
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 1.2e-48 196.8 149 62.4
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 1.2e-48 196.8 153 62.1
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 1.2e-48 196.8 149 61.7
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 1.5e-48 196.4 146 62.3
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 2.0e-48 196.1 149 61.1
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 2.0e-48 196.1 155 61.9
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 2.6e-48 195.7 149 62.4
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 2.6e-48 195.7 149 63.1
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 5.8e-48 194.5 149 62.4
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 7.5e-48 194.1 149 61.7
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 9.8e-48 193.7 149 59.7
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 9.8e-48 193.7 149 59.7
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 1.3e-47 193.4 149 58.4
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 2.9e-47 192.2 149 59.1
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 2.9e-47 192.2 149 61.7
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 3.7e-47 191.8 166 60.2
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 8.3e-47 190.7 149 59.7
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 7.0e-46 187.6 127 66.9
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 9.2e-46 187.2 149 60.4
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 2.0e-45 186.0 150 61.3
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 3.5e-45 185.3 149 59.1
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 7.8e-45 184.1 149 57.7
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 7.8e-45 184.1 149 57.7
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 3.9e-44 181.8 175 53.7
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 5.0e-44 181.4 149 58.4
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 1.6e-42 176.4 135 61.5
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 4.7e-42 174.9 145 55.2
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 8.1e-42 174.1 148 54.7
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 1.7e-39 166.4 121 63.6
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 3.7e-39 165.2 111 72.1
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 1.9e-38 162.9 125 63.2
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 3.2e-38 162.2 146 49.3
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 3.6e-34 148.7 130 56.9
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 4.4e-32 141.7 149 54.4
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 4.9e-31 138.3 120 51.7
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 9.2e-30 134.0 94 63.8
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 2.8e-26 122.5 104 55.8
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 7.6e-24 114.4 101 49.5
Eucgr.E01790 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.6e-21 106.7 82 59.8
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 1.7e-20 103.2 138 36.2
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 4.3e-19 98.6 66 66.7
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 1.1e-17 94.0 64 70.3
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 2.4e-17 92.8 65 67.7
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 3.1e-17 92.4 125 44.0
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 5.3e-17 91.7 103 47.6
Mapoly0040s0015 Marchantia polymorpha HOM05D007311 ORTHO05D009011 5.8e-16 88.2 144 31.2
SMO139G0010 Selaginella moellendorffii HOM05D007311 ORTHO05D009011 7.9e-13 77.8 151 28.5
Ciclev10003443m.g Citrus clementina HOM05D007311 ORTHO05D009011 3.9e-12 75.5 77 50.6
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 5.1e-12 75.1 66 56.1
FAN13G1634 Fragaria x ananassa HOM05D007311 ORTHO05D009011 9.6e-11 70.9 49 65.3
Zm00001eb347540 Zea mays HOM05D007311 ORTHO05D009011 6.4e-07 58.2 66 42.4
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 1.4e-06 57.0 35 65.7


User provided reference genes

Program Settings