Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 8.0e-183 644.0 435 100.0
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 1.6e-146 523.5 307 87.3
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 3.2e-139 499.2 306 82.7
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 1.2e-130 470.7 300 78.3
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 7.4e-128 461.5 303 77.2
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 1.6e-127 460.3 311 76.8
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 6.2e-127 458.4 307 75.9
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 6.2e-127 458.4 303 77.2
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 8.2e-127 458.0 307 75.6
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 8.2e-127 458.0 303 77.6
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 8.2e-127 458.0 307 76.2
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 1.1e-126 457.6 310 75.8
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 2.4e-126 456.4 307 74.9
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 2.4e-126 456.4 307 74.9
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 3.1e-126 456.1 307 76.2
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 4.0e-126 455.7 311 75.2
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 6.9e-126 454.9 307 75.2
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 1.2e-125 454.1 307 76.2
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 2.0e-125 453.4 298 78.2
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 2.0e-125 453.4 308 76.0
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 5.8e-125 451.8 308 74.7
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 5.8e-125 451.8 302 74.8
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 7.6e-125 451.4 308 74.4
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 1.0e-124 451.1 307 76.2
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 1.3e-124 450.7 312 74.7
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 1.7e-124 450.3 309 75.1
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 2.9e-124 449.5 310 75.2
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 6.5e-124 448.4 310 73.5
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 1.1e-123 447.6 310 74.8
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 1.1e-123 447.6 314 74.2
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 1.4e-123 447.2 312 74.4
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 1.4e-123 447.2 313 75.7
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 1.9e-123 446.8 304 76.3
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 1.9e-123 446.8 309 72.8
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 2.5e-123 446.4 305 72.8
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 3.2e-123 446.0 303 75.6
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 5.5e-123 445.3 309 73.5
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 5.5e-123 445.3 305 72.5
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 9.3e-123 444.5 304 74.7
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 1.6e-122 443.7 312 74.0
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 2.7e-122 443.0 295 74.6
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 2.7e-122 443.0 311 73.3
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 2.7e-122 443.0 304 74.7
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 3.5e-122 442.6 313 72.2
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 4.6e-122 442.2 313 72.2
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 6.1e-122 441.8 303 74.3
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 6.1e-122 441.8 341 68.3
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 7.9e-122 441.4 313 72.5
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 1.3e-121 440.7 303 74.9
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 1.3e-121 440.7 306 73.9
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 1.3e-121 440.7 305 74.1
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 1.8e-121 440.3 335 69.6
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 2.3e-121 439.9 300 72.3
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 2.3e-121 439.9 303 74.3
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 5.1e-121 438.7 303 72.9
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 1.5e-120 437.2 297 76.4
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 1.9e-120 436.8 315 70.5
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 2.5e-120 436.4 300 73.0
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 3.3e-120 436.0 303 73.6
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 2.2e-119 433.3 304 73.4
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 3.7e-119 432.6 301 73.1
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 4.8e-119 432.2 304 75.7
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 6.3e-119 431.8 315 71.1
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 5.3e-118 428.7 326 68.7
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 5.3e-118 428.7 302 70.9
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 1.2e-117 427.6 314 70.1
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 2.6e-117 426.4 313 70.3
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 2.6e-117 426.4 313 70.3
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 2.6e-117 426.4 313 70.3
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 4.5e-117 425.6 329 69.0
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 5.9e-117 425.2 313 70.9
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 5.9e-117 425.2 314 70.1
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.3e-116 424.1 316 71.8
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 1.3e-116 424.1 287 76.0
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 1.7e-116 423.7 311 70.1
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 2.2e-116 423.3 312 71.5
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 3.8e-116 422.5 315 69.2
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 3.8e-116 422.5 338 68.6
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 5.0e-116 422.2 314 69.7
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 1.8e-113 413.7 305 70.8
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 1.7e-111 407.1 306 69.0
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 2.8e-111 406.4 306 68.6
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 3.7e-111 406.0 312 67.0
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 8.2e-111 404.8 314 67.2
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 1.0e-108 397.9 309 68.9
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 3.2e-107 392.9 372 59.7
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 2.2e-103 380.2 280 68.6
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 1.4e-102 377.5 293 67.2
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 3.2e-99 366.3 243 76.5
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 4.2e-99 365.9 303 64.4
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 1.4e-97 360.9 539 42.9
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 1.3e-95 354.4 262 71.0
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 8.2e-95 351.7 273 68.1
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 2.0e-88 330.5 219 74.4
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 2.7e-82 310.1 293 56.0
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 2.2e-79 300.4 213 71.8
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 1.0e-76 291.6 219 68.0
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 1.3e-68 264.6 299 51.2
Lj3A28G25 Lonicera japonica HOM05D006577 ORTHO05D008428 3.6e-66 256.5 177 75.7
HanXRQChr07g0198421 Helianthus annuus HOM05D006577 ORTHO05D008428 4.4e-64 249.6 170 77.6
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 1.7e-60 237.7 179 69.3
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 3.3e-51 206.8 125 77.6
Lj9P453T24 Lonicera japonica HOM05D006577 ORTHO05D008428 3.7e-47 193.4 141 69.5
MCO15G109 Micromonas commoda HOM05D006577 ORTHO05D008428 6.8e-41 172.6 267 37.8
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 1.3e-26 125.2 99 67.7
TPR.G30154 Trifolium pratense HOM05D006577 ORTHO05D008428 1.6e-26 124.8 189 46.6
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 4.8e-26 123.2 97 70.1
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 6.2e-26 122.9 75 81.3
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 5.3e-25 119.8 69 84.1
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 3.4e-24 117.1 86 69.8
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.4e-22 111.7 63 82.5
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 7.1e-22 109.4 63 81.0
MD15G1000700 Malus domestica HOM05D006577 ORTHO05D008428 6.0e-21 106.3 115 57.4
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 9.6e-19 99.0 63 77.8
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 9.6e-19 99.0 57 77.2
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 8.4e-15 85.9 46 82.6
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 1.4e-14 85.1 53 75.5
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 3.2e-14 84.0 67 68.7
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 7.1e-14 82.8 46 80.4
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 9.3e-14 82.4 59 69.5
Cre06.g280700 Chlamydomonas reinhardtii HOM05D006577 ORTHO05D008428 2.1e-13 81.3 120 38.3
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 6.7e-12 76.3 38 86.8


User provided reference genes

Program Settings