Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0197521 Helianthus annuus HOM05D011053 ORTHO05D010547 0.0e+00 1118.6 601 100.0
HanXRQChr08g0225061 Helianthus annuus HOM05D011053 ORTHO05D010547 2.6e-248 862.1 524 85.7
HanXRQChr16g0526441 Helianthus annuus HOM05D011053 ORTHO05D010547 4.8e-85 319.7 204 84.8
HanXRQChr02g0058501 Helianthus annuus HOM05D011053 ORTHO05D010547 4.1e-76 290.0 411 39.9
HanXRQChr04g0126351 Helianthus annuus HOM05D011053 ORTHO05D010547 6.5e-66 256.1 460 36.7
HanXRQChr11g0327291 Helianthus annuus HOM05D011053 ORTHO05D010547 5.5e-65 253.1 422 37.0
Lsat_1_v5_gn_9_116400 Lactuca sativa HOM05D011053 ORTHO05D010547 3.7e-61 240.4 305 44.9
HanXRQChr05g0159821 Helianthus annuus HOM05D011053 ORTHO05D010547 7.2e-57 226.1 402 33.6
HanXRQChr04g0115711 Helianthus annuus HOM05D011053 ORTHO05D010547 2.7e-51 207.6 371 33.4
ECA240G4800 Erigeron canadensis HOM05D000096 ORTHO05D000045 3.0e-47 194.1 363 32.8
HanXRQChr06g0172761 Helianthus annuus HOM05D011053 ORTHO05D010547 6.8e-47 193.0 210 46.2
ECA238G0409 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.8e-45 187.6 419 30.1
HanXRQChr02g0048691 Helianthus annuus HOM05D011053 ORTHO05D010547 1.3e-42 178.7 488 28.9
HanXRQChr09g0251611 Helianthus annuus HOM05D011053 ORTHO05D010547 6.6e-42 176.4 181 49.2
HanXRQChr10g0285501 Helianthus annuus HOM05D011053 ORTHO05D010547 3.8e-34 150.6 257 38.5
HanXRQChr02g0040311 Helianthus annuus HOM05D008839 ORTHO05D010547 2.3e-31 141.4 378 25.9
HanXRQChr12g0354851 Helianthus annuus HOM05D011053 ORTHO05D010547 8.9e-31 139.4 169 40.8
HanXRQChr03g0065831 Helianthus annuus HOM05D011053 ORTHO05D010547 7.5e-30 136.3 70 94.3
HanXRQChr16g0521991 Helianthus annuus HOM05D008839 ORTHO05D010547 1.9e-28 131.7 466 26.0
HanXRQChr11g0337461 Helianthus annuus HOM05D011053 ORTHO05D010547 1.6e-27 128.6 442 27.8
HanXRQChr08g0233401 Helianthus annuus HOM05D008839 ORTHO05D010547 1.3e-26 125.6 462 24.5
FvH4_6g08820 Fragaria vesca HOM05D007856 ORTHO05D003348 8.0e-24 116.3 407 26.3
FAN26G2587 Fragaria x ananassa HOM05D007856 ORTHO05D003348 4.0e-23 114.0 407 26.0
FvH4_3g02850 Fragaria vesca HOM05D000096 ORTHO05D000045 5.2e-23 113.6 432 25.2
ECA240G0326 Erigeron canadensis HOM05D008839 ORTHO05D010547 8.9e-23 112.8 350 25.7
RcHm_v2.0_Chr2g0150581 Rosa chinensis HOM05D007856 ORTHO05D003348 8.9e-23 112.8 421 22.6
Thecc.04G012000 Theobroma cacao HOM05D000096 ORTHO05D000045 1.2e-22 112.5 446 24.7
ECA247G1268 Erigeron canadensis HOM05D000096 ORTHO05D002173 2.6e-22 111.3 258 29.1
ECA238G2960 Erigeron canadensis HOM05D000096 ORTHO05D000045 7.5e-22 109.8 309 25.2
QL06p039579 Quercus lobata HOM05D002907 ORTHO05D000065 7.5e-22 109.8 408 24.0
ECA246G0696 Erigeron canadensis HOM05D000096 ORTHO05D000045 8.3e-21 106.3 447 22.4
QL05p044516 Quercus lobata HOM05D002907 ORTHO05D000065 2.4e-20 104.8 441 25.4
Aqoxy4G01383 Aquilegia oxysepala HOM05D002907 ORTHO05D000065 4.1e-20 104.0 364 25.0
Aqoxy4G03175 Aquilegia oxysepala HOM05D002907 ORTHO05D000065 4.1e-20 104.0 364 25.0
Aqoxy5G04189 Aquilegia oxysepala HOM05D002907 ORTHO05D000065 4.1e-20 104.0 364 25.0
FAN01G3000 Fragaria x ananassa HOM05D007856 ORTHO05D003348 4.1e-20 104.0 348 26.4
TWI53G0762 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 1.7e-18 98.6 374 25.7
Lsat_1_v5_gn_1_127421 Lactuca sativa HOM05D052696 ORTHO05D010547 3.9e-18 97.4 221 32.1
FAN01G0657 Fragaria x ananassa HOM05D007856 ORTHO05D003348 6.6e-18 96.7 269 28.6
Hma1.2p1_0006F.1_g004680 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 1.1e-17 95.9 395 25.6
Hma1.2p1_0045F.1_g026410 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 1.5e-17 95.5 299 26.4
QL03p025410 Quercus lobata HOM05D000005 ORTHO05D000065 1.5e-17 95.5 412 23.3
FvH4_1g07041 Fragaria vesca HOM05D007856 ORTHO05D003348 2.5e-17 94.7 463 23.5
Thecc.03G185000 Theobroma cacao HOM05D007876 ORTHO05D000065 4.3e-17 94.0 449 23.4
TWI77G0313 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 4.3e-17 94.0 415 25.3
Aqoxy3G01099 Aquilegia oxysepala HOM05D002907 ORTHO05D005554 9.5e-17 92.8 416 22.6
Os07g0190600 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D007430 1.2e-16 92.4 406 23.2
QL93p0100_0313 Quercus lobata HOM05D000038 ORTHO05D000612 3.6e-16 90.9 312 28.5
Thecc.04G155200 Theobroma cacao HOM05D000096 ORTHO05D000045 6.2e-16 90.1 347 24.8
FvH4_2g08146 Fragaria vesca HOM05D007856 ORTHO05D003348 8.1e-16 89.7 309 26.5
Peaxi162Scf00386g00927 Petunia axillaris HOM05D002907 ORTHO05D005554 1.8e-15 88.6 384 23.7
TWI14G1065 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.8e-15 88.6 382 27.0
Lsat_1_v5_gn_5_161140 Lactuca sativa HOM05D008839 ORTHO05D010547 2.3e-15 88.2 396 22.2
ECA234G4521 Erigeron canadensis HOM05D011053 ORTHO05D010547 3.1e-15 87.8 89 43.8
ECA233G0787 Erigeron canadensis HOM05D000096 ORTHO05D000647 4.0e-15 87.4 97 37.1
Peaxi162Scf00005g02517 Petunia axillaris HOM05D002907 ORTHO05D005554 4.0e-15 87.4 384 23.4
TWI53G1742 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 4.0e-15 87.4 343 23.6
Aqoxy4G01036 Aquilegia oxysepala HOM05D000100 ORTHO05D000052 6.8e-15 86.7 345 23.2
FvH4_5g21501 Fragaria vesca HOM05D006849 ORTHO05D003348 6.8e-15 86.7 383 21.9
TWI60G0328 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 6.8e-15 86.7 442 23.8
RcHm_v2.0_Chr1g0371171 Rosa chinensis HOM05D006849 ORTHO05D003348 8.9e-15 86.3 391 25.1
Potri.019G061550 Populus trichocarpa HOM05D006849 ORTHO05D003348 1.5e-14 85.5 291 24.7
ECA233G6247 Erigeron canadensis HOM05D000006 ORTHO05D001300 2.0e-14 85.1 214 28.5
QL07p006362 Quercus lobata HOM05D002907 ORTHO05D005554 3.4e-14 84.3 211 29.9
FAN02G2385 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.8e-14 83.6 285 28.1
QL93p0160_0004 Quercus lobata HOM05D002907 ORTHO05D000065 5.8e-14 83.6 281 28.1
PSO675G3596 Papaver somniferum HOM05D002907 ORTHO05D013727 7.5e-14 83.2 321 24.6
TWI73G0686 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 7.5e-14 83.2 324 24.7
Carub.0004s2878 Capsella rubella HOM05D000305 ORTHO05D000065 1.3e-13 82.4 400 22.8
FAN06G0436 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.3e-13 82.4 330 27.0
CANSAT35G0321 Cannabis sativa HOM05D002907 ORTHO05D005554 2.2e-13 81.6 395 22.5
Peaxi162Scf01370g00020 Petunia axillaris HOM05D002907 ORTHO05D005554 4.9e-13 80.5 423 23.6
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 1.1e-12 79.3 208 25.5
Potri.003G004401 Populus trichocarpa HOM05D006849 ORTHO05D003348 1.1e-12 79.3 238 23.9
FAN24G0953 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.4e-12 79.0 302 25.5
Lsat_1_v5_gn_0_38321 Lactuca sativa HOM05D008839 ORTHO05D010547 1.4e-12 79.0 328 22.6
Lsat_1_v5_gn_5_58000 Lactuca sativa HOM05D008839 ORTHO05D010547 1.9e-12 78.6 235 23.8
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.2e-12 77.8 96 35.4
DCAR_010741 Daucus carota HOM05D019742 ORTHO05D019081 4.1e-12 77.4 293 25.6
Lsat_1_v5_gn_8_68800 Lactuca sativa HOM05D008839 ORTHO05D010547 4.1e-12 77.4 280 22.9
Sopen11g022000 Solanum pennellii HOM05D002907 ORTHO05D005554 4.1e-12 77.4 393 23.2
A09p40830 Brassica napus HOM05D000313 ORTHO05D000065 5.4e-12 77.0 419 22.2
Sopen09g023780 Solanum pennellii HOM05D002907 ORTHO05D005554 5.4e-12 77.0 393 23.2
SGA_v2.0_scaffold28G11887 Striga asiatica HOM05D002441 ORTHO05D000174 5.4e-12 77.0 383 22.2
TPR.G6063 Trifolium pratense HOM05D000096 ORTHO05D000065 5.4e-12 77.0 343 22.4
THA.LOC104813725 Tarenaya hassleriana HOM05D000313 ORTHO05D000065 2.1e-11 75.1 392 20.4
BolC2t12325H Brassica oleracea HOM05D000313 ORTHO05D000065 4.6e-11 73.9 359 22.3
BcaC04g20225 Brassica carinata HOM05D000305 ORTHO05D000065 6.0e-11 73.6 425 21.6
Lsat_1_v5_gn_9_118901 Lactuca sativa HOM05D008839 ORTHO05D010547 3.0e-10 71.2 457 20.4
TWI38G0982 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.0e-10 71.2 404 23.8
Thecc.09G096600 Theobroma cacao HOM05D000096 ORTHO05D000045 3.9e-10 70.9 284 24.6
TWI56G0628 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.9e-10 70.9 321 23.1
QL07p005779 Quercus lobata HOM05D002907 ORTHO05D005554 1.9e-09 68.6 191 29.3
Potri.001G165480 Populus trichocarpa HOM05D018388 ORTHO05D003348 2.5e-09 68.2 303 23.4
Peaxi162Scf00073g02336 Petunia axillaris HOM05D002907 ORTHO05D005554 4.3e-09 67.4 403 22.6
Peaxi162Scf00661g00421 Petunia axillaris HOM05D002907 ORTHO05D005554 4.3e-09 67.4 403 22.6
Lsat_1_v5_gn_3_127341 Lactuca sativa HOM05D008839 ORTHO05D010547 5.6e-09 67.0 233 22.7
BcaB05g24332 Brassica carinata HOM05D000313 ORTHO05D000065 7.3e-09 66.6 457 21.9
BcaC05g27392 Brassica carinata HOM05D000313 ORTHO05D000065 7.3e-09 66.6 397 20.2
BolC1t04960H Brassica oleracea HOM05D000313 ORTHO05D000065 7.3e-09 66.6 411 20.7
TWI32G0194 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 7.3e-09 66.6 421 22.8
FAN14G2538 Fragaria x ananassa HOM05D006849 ORTHO05D003348 9.5e-09 66.2 268 25.0
COL.COLO4_37009 Corchorus olitorius HOM05D007876 ORTHO05D007430 1.2e-08 65.9 258 23.6
Lsat_1_v5_gn_8_146240 Lactuca sativa HOM05D008839 ORTHO05D010547 1.2e-08 65.9 181 23.8
C02p24580 Brassica napus HOM05D000313 ORTHO05D000065 1.6e-08 65.5 363 21.8
C02p26060 Brassica napus HOM05D000353 ORTHO05D000174 1.6e-08 65.5 429 19.3
C01p35750 Brassica napus HOM05D000313 ORTHO05D000065 2.1e-08 65.1 424 21.2
C07p23830 Brassica napus HOM05D000313 ORTHO05D000065 2.8e-08 64.7 374 21.1
Solyc12g038200.3 Solanum lycopersicum HOM05D002700 ORTHO05D003228 2.8e-08 64.7 203 26.1
A02p26890 Brassica napus HOM05D000313 ORTHO05D000065 4.7e-08 63.9 337 23.1
A06p10270 Brassica napus HOM05D000305 ORTHO05D000065 6.2e-08 63.5 364 21.2
C06p14800 Brassica napus HOM05D000313 ORTHO05D000065 8.1e-08 63.2 401 18.7
Lsat_1_v5_gn_9_31800 Lactuca sativa HOM05D008839 ORTHO05D010547 8.1e-08 63.2 130 26.9
Sopen06g010830 Solanum pennellii HOM05D002907 ORTHO05D005554 8.1e-08 63.2 216 25.9
Zm00001eb388900 Zea mays HOM05D008312 ORTHO05D010433 8.1e-08 63.2 237 22.4
C01p50060 Brassica napus HOM05D000313 ORTHO05D000065 1.4e-07 62.4 415 19.8
C08p01640 Brassica napus HOM05D000313 ORTHO05D000065 1.4e-07 62.4 377 19.9
BraA04t18119Z Brassica rapa HOM05D000305 ORTHO05D000065 1.8e-07 62.0 433 20.3
BraA08t34530Z Brassica rapa HOM05D000313 ORTHO05D000065 1.8e-07 62.0 473 20.3
A09p35480 Brassica napus HOM05D000305 ORTHO05D000065 2.4e-07 61.6 301 20.9
CANSAT78G0666 Cannabis sativa HOM05D002907 ORTHO05D005554 2.4e-07 61.6 284 21.1
BcaC06g36731 Brassica carinata HOM05D000313 ORTHO05D000065 3.1e-07 61.2 380 22.1
CANSAT01G2740 Cannabis sativa HOM05D002907 ORTHO05D005554 3.1e-07 61.2 225 26.2
Solyc10g074430.2 Solanum lycopersicum HOM05D002907 ORTHO05D005554 3.1e-07 61.2 356 20.5
BolC8t46967H Brassica oleracea HOM05D000313 ORTHO05D000065 4.0e-07 60.8 269 21.2
Zm00001eb388870 Zea mays HOM05D008312 ORTHO05D010433 4.0e-07 60.8 230 22.2
COL.COLO4_19791 Corchorus olitorius HOM05D000096 ORTHO05D007430 5.2e-07 60.5 332 20.2
TWI36G1694 Tripterygium wilfordii HOM05D000824 ORTHO05D003348 5.2e-07 60.5 182 23.6
A01p33560 Brassica napus HOM05D000313 ORTHO05D000065 6.8e-07 60.1 341 21.7
C02p26880 Brassica napus HOM05D000313 ORTHO05D000065 6.8e-07 60.1 391 19.9
BolC7t40506H Brassica oleracea HOM05D000313 ORTHO05D000065 6.8e-07 60.1 438 21.2
Dinv10762 Davidia involucrata HOM05D002327 ORTHO05D002306 6.8e-07 60.1 336 20.5
PSO339G4386 Papaver somniferum HOM05D002907 ORTHO05D000065 6.8e-07 60.1 183 26.8
C05p46420 Brassica napus HOM05D000313 ORTHO05D000065 8.9e-07 59.7 414 19.3
BolC6t36657H Brassica oleracea HOM05D000305 ORTHO05D000065 1.2e-06 59.3 370 18.9
BcaNung02470 Brassica carinata HOM05D000313 ORTHO05D000065 1.5e-06 58.9 415 21.0
BcaB05g23882 Brassica carinata HOM05D000353 ORTHO05D010037 2.0e-06 58.5 379 19.3
BraA09t40707Z Brassica rapa HOM05D000353 ORTHO05D000174 2.6e-06 58.2 444 20.0
COL.COLO4_24124 Corchorus olitorius HOM05D007876 ORTHO05D007430 2.6e-06 58.2 124 32.3
A03p36970 Brassica napus HOM05D000313 ORTHO05D000065 3.4e-06 57.8 368 22.0
BraA09t40035Z Brassica rapa HOM05D000313 ORTHO05D000065 3.4e-06 57.8 390 19.0
Nitab4.5_0000162g0050 Nicotiana tabacum HOM05D002907 ORTHO05D005554 3.4e-06 57.8 210 22.9
BolC6t36658H Brassica oleracea HOM05D000313 ORTHO05D000065 4.4e-06 57.4 399 19.3
DCAR_028338 Daucus carota HOM05D002492 ORTHO05D002621 4.4e-06 57.4 394 21.1
C07p00620 Brassica napus HOM05D000313 ORTHO05D000065 5.8e-06 57.0 379 22.2
CAN.G665.22 Capsicum annuum HOM05D002907 ORTHO05D005554 5.8e-06 57.0 221 26.2
Sopen01g012720 Solanum pennellii HOM05D002907 ORTHO05D005554 5.8e-06 57.0 206 24.8
BraA05t19977Z Brassica rapa HOM05D000313 ORTHO05D000065 7.6e-06 56.6 378 19.8
SGA_v2.0_scaffold106G30698 Striga asiatica HOM05D000353 ORTHO05D000174 7.6e-06 56.6 334 21.6
C04p18340 Brassica napus HOM05D000313 ORTHO05D000065 9.9e-06 56.2 372 20.4


User provided reference genes

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