Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 0.0e+00 1298.1 666 100.0
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 1.2e-291 1006.1 656 79.4
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 2.8e-280 968.4 673 74.3
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 2.0e-241 839.3 673 66.3
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 4.2e-239 831.6 689 64.3
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 2.8e-235 818.9 684 63.2
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 6.2e-235 817.8 684 62.9
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 8.1e-235 817.4 709 63.3
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.8e-234 816.2 686 63.8
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 2.0e-233 812.8 677 63.7
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 1.6e-230 803.1 693 62.0
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 4.6e-230 801.6 692 61.7
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 1.5e-228 796.6 707 61.7
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 1.9e-228 796.2 704 59.9
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 2.5e-228 795.8 690 61.4
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 4.3e-228 795.0 727 59.0
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 2.1e-227 792.7 682 61.1
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 6.2e-227 791.2 685 63.2
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 1.1e-226 790.4 690 61.6
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 1.8e-226 789.6 688 60.9
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 1.8e-226 789.6 691 61.4
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 3.1e-226 788.9 683 62.2
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 9.0e-226 787.3 678 61.8
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 3.4e-225 785.4 676 62.3
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 1.2e-222 776.9 687 60.4
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.3e-221 773.5 721 58.0
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 1.3e-221 773.5 669 61.3
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 1.3e-221 773.5 686 60.6
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 3.9e-221 771.9 731 57.7
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 1.9e-220 769.6 692 60.1
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 3.3e-220 768.8 689 58.8
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 7.4e-220 767.7 692 60.1
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 5.3e-218 761.5 678 58.8
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 5.3e-218 761.5 686 60.2
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 9.0e-218 760.8 692 59.1
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 1.5e-217 760.0 691 59.3
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 1.2e-214 750.4 684 58.2
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 7.9e-214 747.7 692 57.7
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 1.0e-213 747.3 681 57.0
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 3.9e-213 745.3 672 59.7
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 5.1e-213 745.0 646 61.5
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 6.7e-213 744.6 700 58.1
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 1.6e-211 740.0 677 59.2
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 2.8e-211 739.2 694 59.1
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 4.8e-211 738.4 680 57.5
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 4.5e-209 731.9 683 57.5
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 1.0e-208 730.7 678 56.6
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 1.0e-208 730.7 696 58.2
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 1.3e-208 730.3 680 56.8
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 3.8e-208 728.8 676 56.1
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 6.5e-208 728.0 680 56.6
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 1.1e-207 727.2 683 56.7
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 2.1e-206 723.0 677 56.7
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 3.6e-206 722.2 603 63.2
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 3.0e-205 719.2 686 56.4
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 3.9e-205 718.8 687 57.2
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 5.1e-205 718.4 677 57.9
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 2.5e-204 716.1 681 57.9
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 2.2e-203 713.0 680 57.4
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 1.1e-202 710.7 687 56.9
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 1.8e-202 709.9 675 57.2
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 4.1e-202 708.8 685 57.2
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 5.3e-202 708.4 680 56.8
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 9.1e-202 707.6 675 57.0
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 2.0e-201 706.4 680 56.6
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 5.9e-201 704.9 677 57.3
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 2.2e-200 703.0 684 56.7
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 1.9e-199 699.9 681 55.5
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 3.2e-199 699.1 677 55.8
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 7.2e-199 698.0 683 56.5
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.0e-197 694.1 681 57.0
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 1.3e-195 687.2 677 56.7
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 1.3e-195 687.2 639 58.2
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 1.5e-193 680.2 660 56.5
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 3.2e-191 672.5 484 68.6
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 1.4e-189 667.2 682 55.0
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 8.8e-189 664.5 621 57.8
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 4.4e-188 662.1 664 54.8
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 2.2e-184 649.8 607 56.7
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 6.5e-184 648.3 606 58.4
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 7.2e-183 644.8 680 53.5
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 4.7e-182 642.1 668 53.6
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 7.5e-180 634.8 669 52.8
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 1.3e-179 634.0 682 52.5
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 7.5e-172 608.2 612 55.1
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 2.2e-171 606.7 615 54.8
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 1.6e-169 600.5 675 50.7
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.1e-167 594.3 680 50.1
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 1.1e-167 594.3 705 50.5
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 7.2e-167 591.7 674 49.1
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 1.6e-158 563.9 586 54.4
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 1.4e-154 550.8 653 51.1
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 4.1e-154 549.3 604 51.2
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 1.6e-150 537.3 661 50.7
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 1.4e-133 481.1 616 48.1
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 3.1e-125 453.4 700 40.6
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.3e-120 438.0 299 71.2
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 1.5e-119 434.5 696 40.9
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 5.6e-119 432.6 466 49.1
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 6.2e-110 402.5 354 57.9
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 1.3e-104 384.8 279 65.6
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 3.0e-64 250.8 218 60.6
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.7e-54 217.2 315 47.0
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 1.1e-32 146.0 411 30.9
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.9e-29 135.2 96 68.8
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.0e-29 133.3 96 68.8
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.9e-27 127.5 96 65.6
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.1e-26 125.9 92 67.4
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 8.3e-22 109.8 80 65.0
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 2.1e-20 105.1 68 70.6
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 1.4e-16 92.4 204 37.7
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 4.0e-16 90.9 327 25.1
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 5.4e-13 80.5 47 72.3
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 2.8e-09 68.2 175 30.3
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.4e-08 65.9 70 50.0
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 8.4e-06 56.6 50 56.0


User provided reference genes

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