Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 9.0e-114 413.7 222 100.0
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 2.0e-89 332.8 225 77.3
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 4.2e-87 325.1 222 79.3
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 6.7e-85 317.8 226 73.9
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 5.7e-84 314.7 227 70.5
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 6.3e-83 311.2 227 70.9
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 8.2e-83 310.8 222 73.0
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.8e-82 309.7 222 72.5
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 2.4e-82 309.3 227 70.9
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 3.1e-82 308.9 222 72.5
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 3.1e-82 308.9 227 69.6
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 7.0e-82 307.8 227 69.2
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 2.0e-81 306.2 227 69.6
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 2.0e-81 306.2 226 72.1
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.9e-81 304.7 227 69.6
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 1.7e-80 303.1 234 69.7
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.8e-80 302.0 226 69.0
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 3.8e-80 302.0 222 68.9
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.5e-80 301.2 223 68.6
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.5e-80 301.2 223 68.6
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 8.5e-80 300.8 223 68.6
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.1e-79 300.4 223 69.5
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.1e-79 300.4 223 69.5
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.5e-79 300.1 225 69.8
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.9e-79 299.7 227 68.7
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 3.2e-79 298.9 220 68.2
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 5.5e-79 298.1 226 68.6
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 9.4e-79 297.4 228 67.5
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.6e-78 296.6 221 71.9
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 2.1e-78 296.2 221 70.1
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.1e-78 296.2 226 68.1
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 2.1e-78 296.2 221 70.1
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 2.7e-78 295.8 222 69.8
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.7e-78 295.8 223 70.0
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 4.7e-78 295.0 228 70.2
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.1e-78 294.7 223 69.5
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.1e-78 294.7 226 69.9
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 8.0e-78 294.3 222 67.6
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.0e-77 293.9 235 65.5
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 5.2e-77 291.6 227 67.4
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 5.2e-77 291.6 239 64.9
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 8.8e-77 290.8 230 66.5
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 1.1e-76 290.4 222 70.7
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.1e-76 290.4 232 66.4
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.1e-76 290.4 238 68.1
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 1.5e-76 290.0 237 65.4
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 5.7e-76 288.1 221 64.7
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 5.7e-76 288.1 239 65.7
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 7.5e-76 287.7 222 71.6
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 7.5e-76 287.7 239 63.6
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 1.3e-75 287.0 227 64.3
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.7e-75 286.6 236 64.8
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 4.8e-75 285.0 222 63.5
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 4.8e-75 285.0 226 63.7
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.1e-74 283.9 221 63.8
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 1.8e-74 283.1 226 69.0
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.4e-74 282.7 212 69.3
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.4e-74 282.7 226 63.7
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 5.3e-74 281.6 231 67.5
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.2e-73 280.4 219 64.4
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.2e-73 280.4 219 65.8
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 2.7e-73 279.3 217 65.4
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 7.7e-73 277.7 219 63.9
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 1.0e-72 277.3 224 63.8
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 1.3e-72 276.9 222 62.2
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 1.3e-72 276.9 222 62.2
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.3e-72 276.9 220 63.2
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 2.2e-72 276.2 218 67.0
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 2.9e-72 275.8 222 61.7
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 3.8e-72 275.4 218 66.5
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 3.8e-72 275.4 222 61.7
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 5.0e-72 275.0 221 65.2
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 6.5e-72 274.6 222 61.7
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.1e-71 273.9 220 64.5
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 1.5e-71 273.5 226 61.9
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.9e-71 273.1 226 61.9
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 3.2e-71 272.3 226 61.5
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.2e-71 272.3 219 62.6
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 4.2e-71 271.9 227 64.3
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 5.5e-71 271.6 214 64.0
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 5.5e-71 271.6 220 64.1
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 5.5e-71 271.6 279 56.6
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 7.2e-71 271.2 227 64.3
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-70 270.0 215 66.0
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.6e-70 270.0 218 61.9
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 2.7e-70 269.2 222 62.6
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 2.7e-70 269.2 226 64.2
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 6.1e-70 268.1 214 63.6
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 8.0e-70 267.7 215 64.2
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 1.0e-69 267.3 224 66.5
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.4e-69 266.9 214 63.1
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.3e-69 266.2 221 64.7
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.2e-68 263.8 218 64.2
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.2e-68 263.8 229 60.3
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.5e-68 263.5 220 59.1
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 1.5e-68 263.5 214 62.1
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 2.0e-68 263.1 224 62.5
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 7.5e-68 261.2 224 61.2
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 7.5e-68 261.2 258 57.0
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 7.5e-68 261.2 221 62.9
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 9.8e-68 260.8 220 65.0
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 1.3e-67 260.4 218 63.8
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.4e-66 256.1 223 60.5
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 3.1e-66 255.8 221 62.4
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 5.4e-66 255.0 163 80.4
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 5.4e-66 255.0 231 58.4
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 5.4e-66 255.0 223 62.8
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 7.0e-66 254.6 232 56.5
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 1.6e-65 253.4 186 69.9
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 5.9e-65 251.5 221 60.2
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 7.7e-65 251.1 220 61.4
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 2.2e-64 249.6 217 59.4
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 3.6e-62 242.3 229 56.3
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 2.0e-57 226.5 175 70.9
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 6.6e-56 221.5 246 47.6
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.5e-55 219.5 241 48.5
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 3.3e-55 219.2 160 71.9
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 5.6e-55 218.4 174 64.4
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 9.5e-55 217.6 217 54.4
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 6.1e-54 214.9 163 65.0
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.8e-53 213.4 222 53.6
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.3e-51 207.2 162 70.4
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 3.7e-51 205.7 155 69.0
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.1e-50 204.1 169 62.7
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 9.2e-50 201.1 141 73.8
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 7.3e-47 191.4 145 67.6
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 3.2e-42 176.0 145 64.1
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 4.1e-42 175.6 218 50.0
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.7e-40 170.2 222 45.0
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.3e-40 169.9 188 51.6
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.1e-39 167.5 194 50.0
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 2.5e-39 166.4 221 43.9
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.3e-39 166.0 221 46.2
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 2.3e-37 159.8 123 69.9
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 9.8e-36 154.5 191 48.2
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 1.3e-35 154.1 126 67.5
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.7e-35 153.7 115 69.6
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 4.9e-35 152.1 115 68.7
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 6.4e-35 151.8 115 69.6
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 5.4e-34 148.7 235 42.1
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 7.1e-34 148.3 216 39.4
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 7.8e-33 144.8 141 58.2
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 1.7e-32 143.7 225 40.9
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.1e-31 141.0 184 44.6
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.9e-31 140.2 145 55.2
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.2e-26 122.9 91 70.3
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 7.1e-26 121.7 182 42.9
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 2.8e-22 109.8 139 46.0
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 4.7e-22 109.0 90 70.0
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 8.1e-22 108.2 134 48.5
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 2.4e-21 106.7 224 33.5
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.9e-21 105.1 84 67.9
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.9e-21 105.1 84 67.9
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 5.8e-20 102.1 116 50.9
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 6.4e-19 98.6 97 54.6
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.4e-18 97.4 70 70.0
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 7.1e-18 95.1 86 55.8
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.6e-17 94.0 169 39.1
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.3e-16 90.1 74 63.5
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 3.9e-16 89.4 75 64.0
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.9e-16 89.4 101 55.4
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 3.3e-15 86.3 86 55.8
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 9.6e-15 84.7 53 73.6
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 9.6e-15 84.7 53 79.2
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.1e-14 83.6 79 50.6
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 2.1e-14 83.6 77 58.4
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 2.8e-14 83.2 52 73.1
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 4.8e-14 82.4 201 31.3
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 4.8e-14 82.4 201 31.3
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 8.1e-14 81.6 53 71.7
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 8.1e-14 81.6 53 71.7
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.1e-13 81.3 53 73.6
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.4e-13 80.1 82 54.9
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 3.1e-13 79.7 75 56.0
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 2.6e-12 76.6 53 77.4
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 4.9e-11 72.4 190 30.5
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 3.2e-10 69.7 78 52.6
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.1e-09 67.0 79 50.6
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 3.3e-07 59.7 55 58.2
Oeu032224.2 Olea europaea HOM05D003667 ORTHO05D004397 7.4e-07 58.5 43 67.4


User provided reference genes

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