Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 5.3e-159 564.3 283 100.0
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 2.8e-51 206.5 265 42.6
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.1e-50 204.5 250 42.0
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 1.1e-50 204.5 250 44.4
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 1.8e-50 203.8 239 47.3
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 6.9e-50 201.8 236 45.8
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 2.0e-49 200.3 239 43.1
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 2.2e-48 196.8 242 42.6
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-47 194.5 246 41.1
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 1.6e-46 190.7 235 43.0
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 1.6e-46 190.7 240 42.9
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 6.0e-46 188.7 240 43.8
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.0e-45 188.0 235 44.3
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.3e-45 187.6 235 44.3
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 1.3e-45 187.6 234 43.6
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 8.7e-45 184.9 235 42.6
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.5e-44 184.1 240 43.8
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 9.6e-44 181.4 232 42.7
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 1.6e-43 180.6 233 42.1
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 4.8e-43 179.1 240 40.4
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 6.2e-43 178.7 233 41.6
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.5e-41 174.1 229 41.0
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 7.6e-41 171.8 232 41.4
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 9.9e-41 171.4 234 41.9
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 1.3e-40 171.0 243 41.2
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 3.8e-40 169.5 236 39.4
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 8.4e-40 168.3 237 38.4
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 1.1e-39 167.9 237 40.5
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.4e-39 167.5 235 39.1
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.9e-39 167.2 236 39.4
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 5.4e-39 165.6 230 40.0
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 5.4e-39 165.6 235 38.3
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 5.4e-39 165.6 236 39.4
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 1.2e-38 164.5 229 41.5
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 2.1e-38 163.7 233 39.5
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.7e-38 163.3 230 39.6
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.7e-38 163.3 190 45.3
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 4.6e-38 162.5 230 38.7
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 4.6e-38 162.5 231 39.8
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 4.6e-38 162.5 196 48.0
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 1.0e-37 161.4 236 38.1
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 2.3e-37 160.2 242 38.0
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 2.3e-37 160.2 200 43.5
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 3.0e-37 159.8 230 38.7
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 3.9e-37 159.5 225 39.6
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 3.9e-37 159.5 235 39.6
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 6.7e-37 158.7 224 40.2
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 8.7e-37 158.3 236 37.3
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 3.3e-36 156.4 195 43.1
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 3.3e-36 156.4 260 36.9
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 1.3e-35 154.5 236 38.6
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 2.8e-35 153.3 247 37.2
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 3.7e-35 152.9 225 39.6
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 4.8e-35 152.5 244 36.5
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 6.2e-35 152.1 234 38.0
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 6.2e-35 152.1 206 40.8
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 8.1e-35 151.8 227 40.1
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 8.1e-35 151.8 219 39.3
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.1e-34 151.4 230 37.8
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.1e-34 151.4 206 41.3
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 1.4e-34 151.0 194 41.8
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 2.4e-34 150.2 242 38.4
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 3.1e-34 149.8 187 43.3
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 9.0e-34 148.3 234 36.8
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.5e-33 147.5 230 37.4
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 3.4e-33 146.4 236 36.4
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 4.5e-33 146.0 230 37.0
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 5.8e-33 145.6 238 37.0
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.3e-32 144.4 195 40.5
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 2.2e-32 143.7 240 36.2
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 2.2e-32 143.7 235 37.9
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 2.2e-32 143.7 235 37.9
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 2.9e-32 143.3 135 53.3
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 4.9e-32 142.5 187 42.8
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 6.4e-32 142.1 234 37.2
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 3.2e-31 139.8 239 36.4
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 7.1e-31 138.7 164 44.5
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 9.3e-31 138.3 239 36.0
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 9.3e-31 138.3 239 36.0
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 9.3e-31 138.3 239 36.0
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 9.3e-31 138.3 239 36.0
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 1.2e-30 137.9 250 36.0
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 6.0e-30 135.6 223 35.0
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 6.0e-30 135.6 205 39.5
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 7.9e-30 135.2 235 35.3
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.0e-29 134.8 202 37.6
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 1.3e-29 134.4 236 35.2
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 1.8e-29 134.0 228 35.5
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 6.7e-29 132.1 232 35.8
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 8.7e-29 131.7 234 34.6
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.1e-28 131.3 234 35.5
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.9e-28 130.6 271 31.4
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 2.5e-28 130.2 219 37.9
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 1.6e-27 127.5 207 38.2
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 2.8e-27 126.7 237 34.6
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 3.7e-27 126.3 236 34.3
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.4e-26 124.4 235 34.0
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 1.4e-26 124.4 226 32.3
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 4.0e-26 122.9 236 33.9
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 4.0e-26 122.9 228 32.9
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.2e-24 117.1 246 32.1
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 6.5e-24 115.5 180 37.2
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 5.5e-23 112.5 209 36.8
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 3.5e-22 109.8 191 37.2
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 6.7e-21 105.5 288 28.5
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 1.6e-19 100.9 226 29.6
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 2.2e-19 100.5 209 30.1
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 1.4e-18 97.8 120 47.5
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 1.4e-18 97.8 120 47.5
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 2.0e-17 94.0 177 34.5
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 3.4e-17 93.2 111 46.8
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 4.5e-17 92.8 114 42.1
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 2.9e-16 90.1 111 45.9
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 3.8e-16 89.7 101 43.6
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 6.5e-16 89.0 110 42.7
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.1e-14 84.0 147 36.1
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.7e-14 83.6 80 45.0
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 5.1e-13 79.3 152 34.9
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.5e-12 77.0 85 37.6
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 2.5e-12 77.0 105 39.0
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 3.3e-12 76.6 103 42.7
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 9.7e-12 75.1 89 41.6
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 2.2e-11 73.9 223 29.1
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 6.3e-11 72.4 100 43.0
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 1.8e-10 70.9 82 43.9
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 3.1e-10 70.1 98 36.7
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 4.1e-10 69.7 89 40.4
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 6.9e-10 68.9 79 45.6
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 9.1e-10 68.6 97 40.2
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.3e-08 64.7 94 40.4
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 2.9e-08 63.5 102 41.2
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 5.0e-08 62.8 100 34.0
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 5.5e-07 59.3 89 34.8
Lsat_1_v5_gn_3_108880 Lactuca sativa HOM05D002370 ORTHO05D022851 1.6e-06 57.8 91 37.4


User provided reference genes

Program Settings