Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 4.2e-165 584.7 317 100.0
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 1.9e-77 293.5 303 61.4
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 1.6e-63 247.3 299 54.2
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 8.7e-62 241.5 298 57.4
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 2.2e-36 157.1 288 39.2
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 4.1e-35 152.9 289 39.8
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.0e-30 138.3 301 37.9
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 4.0e-30 136.3 277 39.7
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 5.2e-30 136.0 289 39.1
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 5.7e-29 132.5 277 39.4
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.4e-27 127.9 297 37.7
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 5.4e-27 125.9 285 36.5
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.7e-25 120.9 267 35.2
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 5.0e-25 119.4 334 34.1
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 6.5e-25 119.0 273 37.7
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 8.6e-25 118.6 286 39.5
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.5e-24 117.9 297 37.0
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 2.5e-24 117.1 305 36.1
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 5.5e-24 115.9 290 36.6
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 1.2e-23 114.8 296 34.8
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 1.6e-23 114.4 305 33.4
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.6e-23 114.4 297 36.7
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 4.7e-23 112.8 287 36.2
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 1.8e-22 110.9 284 35.6
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 1.8e-22 110.9 299 34.4
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 4.0e-22 109.8 314 35.4
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 3.4e-21 106.7 304 34.5
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 1.7e-20 104.4 281 34.2
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.7e-20 103.2 262 35.5
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 3.7e-20 103.2 302 31.1
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 4.9e-20 102.8 284 34.9
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 6.3e-20 102.4 128 50.8
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 6.3e-20 102.4 269 35.7
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 1.8e-19 100.9 267 34.5
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 3.1e-19 100.1 289 33.9
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 3.1e-19 100.1 297 34.3
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 5.4e-19 99.4 278 32.0
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 7.0e-19 99.0 281 30.2
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 7.0e-19 99.0 276 34.4
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 9.2e-19 98.6 315 30.8
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 9.2e-19 98.6 298 33.9
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 1.2e-18 98.2 278 34.2
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 2.7e-18 97.1 284 35.2
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 2.7e-18 97.1 267 35.2
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 3.5e-18 96.7 271 35.1
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 3.5e-18 96.7 291 33.3
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 4.5e-18 96.3 130 46.9
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 7.8e-18 95.5 292 33.2
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 3.8e-17 93.2 177 41.2
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 6.6e-17 92.4 122 47.5
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 2.5e-16 90.5 268 32.8
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 5.6e-16 89.4 172 38.4
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 9.5e-16 88.6 105 51.4
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 9.5e-16 88.6 108 53.7
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.2e-15 88.2 294 29.6
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.2e-15 88.2 282 34.4
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 1.6e-15 87.8 278 34.2
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 1.6e-15 87.8 184 40.8
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.6e-15 87.8 277 35.4
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 6.1e-15 85.9 278 32.7
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 6.1e-15 85.9 286 32.2
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 6.1e-15 85.9 296 31.4
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 8.0e-15 85.5 97 59.8
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 1.0e-14 85.1 165 44.8
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 1.0e-14 85.1 108 57.4
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 1.4e-14 84.7 327 30.9
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 1.8e-14 84.3 175 40.6
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 1.8e-14 84.3 175 40.6
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.8e-14 84.3 287 32.8
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 2.3e-14 84.0 195 39.0
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 2.3e-14 84.0 136 41.9
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.0e-14 83.6 283 32.5
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 6.8e-14 82.4 294 32.7
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 6.8e-14 82.4 128 43.0
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 6.8e-14 82.4 121 53.7
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 8.9e-14 82.0 159 41.5
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 8.9e-14 82.0 121 45.5
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 8.9e-14 82.0 284 31.3
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 8.9e-14 82.0 273 31.9
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 1.2e-13 81.6 98 55.1
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 1.2e-13 81.6 232 35.3
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 1.5e-13 81.3 90 55.6
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 1.5e-13 81.3 166 40.4
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.5e-13 81.3 277 34.3
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 1.5e-13 81.3 273 32.6
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 3.4e-13 80.1 177 40.1
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 3.4e-13 80.1 277 33.6
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 3.4e-13 80.1 313 31.0
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 3.4e-13 80.1 136 39.7
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 4.4e-13 79.7 213 37.1
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 4.4e-13 79.7 229 35.4
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 7.5e-13 79.0 241 35.3
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 7.5e-13 79.0 88 53.4
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 9.8e-13 78.6 273 30.0
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 9.8e-13 78.6 76 59.2
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 1.3e-12 78.2 221 37.1
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 1.3e-12 78.2 90 53.3
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 1.3e-12 78.2 90 53.3
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 1.7e-12 77.8 266 32.0
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 1.7e-12 77.8 94 53.2
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 2.9e-12 77.0 160 39.4
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 3.7e-12 76.6 108 46.3
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 3.7e-12 76.6 304 34.2
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 4.9e-12 76.3 280 30.0
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 8.3e-12 75.5 126 46.0
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.8e-11 74.3 286 28.7
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 2.4e-11 73.9 117 44.4
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 3.2e-11 73.6 61 67.2
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 5.4e-11 72.8 124 41.9
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 5.4e-11 72.8 178 39.3
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 9.2e-11 72.0 290 32.1
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 9.2e-11 72.0 61 67.2
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 9.2e-11 72.0 268 29.9
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 9.2e-11 72.0 285 27.7
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 1.2e-10 71.6 61 67.2
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 1.2e-10 71.6 97 43.3
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 2.7e-10 70.5 281 29.2
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.7e-10 70.5 225 33.8
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 2.7e-10 70.5 226 33.6
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 3.5e-10 70.1 174 35.6
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 3.5e-10 70.1 203 35.0
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 3.5e-10 70.1 65 53.8
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 1.7e-09 67.8 118 40.7
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 6.6e-09 65.9 166 36.7
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 8.6e-09 65.5 282 29.1
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 8.6e-09 65.5 209 34.0
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 1.9e-08 64.3 204 34.8
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 2.8e-07 60.5 123 36.6
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.1e-06 58.5 264 28.0
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 1.8e-06 57.8 77 44.2
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 5.2e-06 56.2 77 42.9
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 8.9e-06 55.5 54 50.0


User provided reference genes

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