Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 3.1e-30 134.4 66 100.0
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 5.2e-25 117.1 66 83.3
ECA236G4186 Erigeron canadensis HOM05D007316 ORTHO05D009393 1.2e-21 105.9 66 81.8
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 1.0e-20 102.8 60 80.0
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 5.0e-20 100.5 64 75.0
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 5.0e-20 100.5 62 80.6
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 8.6e-20 99.8 59 79.7
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 8.6e-20 99.8 62 79.0
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.1e-19 99.4 60 75.0
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.1e-19 99.4 60 75.0
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 2.5e-19 98.2 65 72.3
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 3.3e-19 97.8 60 76.7
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 3.3e-19 97.8 60 76.7
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 3.3e-19 97.8 60 76.7
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 3.3e-19 97.8 60 76.7
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 3.3e-19 97.8 60 75.0
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 3.3e-19 97.8 60 75.0
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 4.2e-19 97.4 60 75.0
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 4.2e-19 97.4 60 75.0
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 7.2e-19 96.7 60 73.3
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 9.5e-19 96.3 60 75.0
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 9.5e-19 96.3 60 75.0
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 1.2e-18 95.9 60 73.3
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 1.2e-18 95.9 59 76.3
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 1.6e-18 95.5 59 76.3
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 1.6e-18 95.5 60 73.3
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.1e-18 95.1 63 71.4
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 2.8e-18 94.7 60 73.3
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 3.6e-18 94.4 59 76.3
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 3.6e-18 94.4 59 74.6
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 3.6e-18 94.4 60 75.0
Lalb_Chr04g0260251 Lupinus albus HOM05D007316 ORTHO05D009393 3.6e-18 94.4 62 74.2
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 4.7e-18 94.0 59 76.3
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 4.7e-18 94.0 60 73.3
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 6.1e-18 93.6 59 71.2
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 6.1e-18 93.6 60 73.3
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 8.0e-18 93.2 59 76.3
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 8.0e-18 93.2 62 72.6
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 8.0e-18 93.2 59 76.3
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 8.0e-18 93.2 59 71.2
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 1.0e-17 92.8 59 74.6
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 1.0e-17 92.8 60 70.0
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 1.4e-17 92.4 59 74.6
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 1.4e-17 92.4 59 74.6
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 1.4e-17 92.4 59 74.6
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 1.8e-17 92.0 59 71.2
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 2.3e-17 91.7 60 70.0
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 2.3e-17 91.7 60 70.0
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 2.3e-17 91.7 60 70.0
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 2.3e-17 91.7 60 70.0
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 3.0e-17 91.3 59 74.6
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 3.0e-17 91.3 58 74.1
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 4.0e-17 90.9 59 74.6
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 6.8e-17 90.1 60 68.3
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.8e-17 90.1 63 69.8
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 1.5e-16 89.0 60 66.7
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 1.5e-16 89.0 60 66.7
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 2.0e-16 88.6 63 63.5
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 2.0e-16 88.6 58 69.0
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 2.0e-16 88.6 58 69.0
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 2.6e-16 88.2 59 69.5
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 2.6e-16 88.2 59 69.5
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 2.6e-16 88.2 59 69.5
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 3.4e-16 87.8 60 66.7
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 5.7e-16 87.0 60 65.0
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 5.7e-16 87.0 60 66.7
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 7.5e-16 86.7 60 61.7
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 2.8e-15 84.7 60 66.7
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 3.7e-15 84.3 60 63.3
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 8.3e-15 83.2 58 67.2
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 4.1e-14 80.9 75 56.0
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 1.5e-11 72.4 41 80.5
Os07g0633800 Oryza sativa ssp. japonica HOM05D007316 ORTHO05D009393 3.3e-11 71.2 60 53.3
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 4.3e-11 70.9 57 59.6
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 7.3e-11 70.1 53 66.0
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 2.8e-10 68.2 41 75.6
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.0e-09 66.2 43 67.4
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.0e-09 66.2 43 67.4
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 1.0e-09 66.2 40 72.5
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.4e-09 65.9 43 65.1
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.4e-09 65.9 43 65.1
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.4e-09 65.9 43 65.1
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 1.4e-09 65.9 42 71.4
Ah.09g230190 Amaranthus hybridus HOM05D007316 ORTHO05D009393 2.3e-09 65.1 43 67.4
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.3e-09 65.1 41 68.3
EL10Ac8g18312 Beta vulgaris HOM05D007316 ORTHO05D009393 3.1e-09 64.7 48 64.6
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.1e-09 64.7 52 61.5
AUR62021328 Chenopodium quinoa HOM05D007316 ORTHO05D009393 4.0e-09 64.3 43 65.1
Gorai.013G118500 Gossypium raimondii HOM05D007316 ORTHO05D009393 5.2e-09 63.9 60 56.7
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 1.2e-08 62.8 32 90.6
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.2e-08 62.8 43 60.5
Gohir.A13G102600 Gossypium hirsutum HOM05D007316 ORTHO05D009393 1.2e-08 62.8 60 55.0
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 1.5e-08 62.4 42 64.3
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 7.5e-08 60.1 41 63.4
Rhsim05G0117300 Rhododendron simsii HOM05D007316 ORTHO05D009393 2.9e-07 58.2 62 51.6
RhsimUnG0015700 Rhododendron simsii HOM05D007316 ORTHO05D009393 2.9e-07 58.2 62 51.6
CAN.G530.4 Capsicum annuum HOM05D007316 ORTHO05D009393 3.7e-07 57.8 35 74.3
Mapoly0010s0075 Marchantia polymorpha HOM05D007316 ORTHO05D009393 3.7e-07 57.8 59 42.4
Solyc08g006570.4 Solanum lycopersicum HOM05D007316 ORTHO05D009393 6.4e-07 57.0 35 74.3
MCO03G596 Micromonas commoda HOM05D007316 ORTHO05D009393 1.4e-06 55.8 56 41.1
HPP92_022152 Vanilla planifolia HOM05D007316 ORTHO05D009393 5.4e-06 53.9 63 44.4


User provided reference genes

Program Settings