Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0192281 Helianthus annuus HOM05D000336 ORTHO05D018162 1.0e-34 149.8 93 100.0
HanXRQChr07g0206521 Helianthus annuus HOM05D000336 ORTHO05D000593 3.9e-34 147.9 92 100.0
HanXRQChr16g0519331 Helianthus annuus HOM05D000336 ORTHO05D018162 3.9e-34 147.9 93 83.9
HanXRQChr08g0219131 Helianthus annuus HOM05D000336 ORTHO05D018162 4.3e-33 144.4 93 98.9
HanXRQChr06g0174421 Helianthus annuus HOM05D000336 ORTHO05D018162 1.2e-32 142.9 73 98.6
HanXRQChr05g0128901 Helianthus annuus HOM05D000336 ORTHO05D000593 6.2e-32 140.6 73 95.9
HanXRQChr07g0190441 Helianthus annuus HOM05D000336 ORTHO05D000593 6.2e-32 140.6 73 95.9
HanXRQChr13g0414081 Helianthus annuus HOM05D000336 ORTHO05D000593 6.2e-32 140.6 73 95.9
HanXRQChr09g0248451 Helianthus annuus HOM05D000336 ORTHO05D000593 8.1e-32 140.2 72 97.2
HanXRQChr17g0567521 Helianthus annuus HOM05D000336 ORTHO05D000593 3.1e-31 138.3 73 93.2
HanXRQChr09g0247571 Helianthus annuus HOM05D000336 ORTHO05D000593 5.2e-31 137.5 97 90.7
HanXRQChr04g0096231 Helianthus annuus HOM05D000336 ORTHO05D000593 2.6e-30 135.2 92 78.3
HanXRQChr03g0084601 Helianthus annuus HOM05D000336 ORTHO05D000593 5.8e-30 134.0 92 77.2
HanXRQChr05g0148141 Helianthus annuus HOM05D000336 ORTHO05D000593 5.8e-30 134.0 92 78.3
HanXRQChr02g0049611 Helianthus annuus HOM05D000336 ORTHO05D000593 7.5e-30 133.7 93 77.4
HanXRQChr02g0045561 Helianthus annuus HOM05D000336 ORTHO05D000593 2.9e-29 131.7 92 76.1
HanXRQChr02g0037871 Helianthus annuus HOM05D000336 ORTHO05D000593 8.3e-29 130.2 91 75.8
Lsat_1_v5_gn_9_113801 Lactuca sativa HOM05D000336 ORTHO05D000593 1.1e-25 119.8 85 76.5
HanXRQChr03g0071061 Helianthus annuus HOM05D000336 ORTHO05D000593 8.1e-24 113.6 86 73.3
ECA240G0856 Erigeron canadensis HOM05D000336 ORTHO05D000593 4.0e-23 111.3 87 72.4
DCAR_021896 Daucus carota HOM05D000336 ORTHO05D000593 2.3e-18 95.5 82 63.4
DCAR_001843 Daucus carota HOM05D000336 ORTHO05D000593 3.0e-18 95.1 84 65.5
Dinv08966 Davidia involucrata HOM05D000336 ORTHO05D000593 3.0e-18 95.1 88 65.9
Dinv16034 Davidia involucrata HOM05D000336 ORTHO05D000593 1.5e-17 92.8 89 64.0
vmacro01901 Vaccinium macrocarpon HOM05D000336 ORTHO05D000593 1.2e-16 89.7 85 62.4
vmacro23359 Vaccinium macrocarpon HOM05D000336 ORTHO05D000593 1.2e-16 89.7 85 62.4
Actinidia02412 Actinidia chinensis HOM05D000336 ORTHO05D000593 2.1e-16 89.0 87 63.2
CSS0038549 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 6.2e-16 87.4 85 62.4
Haze_10394 Corylus avellana HOM05D000336 ORTHO05D000593 1.1e-15 86.7 80 62.5
Cfa004802 Carpinus fangiana HOM05D000336 ORTHO05D000593 1.4e-15 86.3 80 61.2
Cpa.g.c39174 Carica papaya HOM05D000336 ORTHO05D000593 8.9e-15 83.6 83 57.8
CiPaw.05G026900 Carya illinoinensis HOM05D000336 ORTHO05D000593 1.5e-14 82.8 84 60.7
Duzib132G0652 Durio zibethinus HOM05D000336 ORTHO05D000593 1.5e-14 82.8 81 61.7
Gohir.A13G049400 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.5e-14 82.8 81 61.7
Gohir.D13G047900 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.5e-14 82.8 81 61.7
Gorai.013G053500 Gossypium raimondii HOM05D000336 ORTHO05D000593 1.5e-14 82.8 81 61.7
Thecc.02G124900 Theobroma cacao HOM05D000336 ORTHO05D000593 2.0e-14 82.4 82 61.0
Gohir.D01G009700 Gossypium hirsutum HOM05D000336 ORTHO05D000593 3.4e-14 81.6 82 62.2
Gorai.002G011800 Gossypium raimondii HOM05D000336 ORTHO05D000593 3.4e-14 81.6 82 62.2
MELO3C018043.2 Cucumis melo HOM05D000336 ORTHO05D000593 4.4e-14 81.3 83 57.8
CsaV3_4G014650 Cucumis sativus L. HOM05D000336 ORTHO05D000593 4.4e-14 81.3 83 57.8
Gohir.A01G010100 Gossypium hirsutum HOM05D000336 ORTHO05D000593 4.4e-14 81.3 82 62.2
arahy.Tifrunner.gnm1.ann1.GEB016 Arachis hypogaea HOM05D000336 ORTHO05D000593 5.8e-14 80.9 85 55.3
ClCG10G009770 Citrullus lanatus HOM05D000336 ORTHO05D000593 5.8e-14 80.9 83 56.6
GSVIVG01038522001 Vitis vinifera HOM05D000336 ORTHO05D000593 5.8e-14 80.9 85 54.1
Cc02_g20580 Coffea canephora HOM05D000336 ORTHO05D000593 7.6e-14 80.5 87 54.0
Prupe.8G075200 Prunus persica HOM05D000336 ORTHO05D000593 1.7e-13 79.3 92 54.3
FAN27G1881 Fragaria x ananassa HOM05D000336 ORTHO05D000593 2.9e-13 78.6 89 51.7
MD05G1049900 Malus domestica HOM05D000336 ORTHO05D000593 2.9e-13 78.6 93 52.7
PGSC0003DMG400003108 Solanum tuberosum HOM05D000336 ORTHO05D000593 2.9e-13 78.6 94 50.0
FAN20G1434 Fragaria x ananassa HOM05D000336 ORTHO05D000593 3.8e-13 78.2 90 51.1
Manes.10G093200 Manihot esculenta HOM05D000336 ORTHO05D000593 3.8e-13 78.2 86 53.5
RcHm_v2.0_Chr6g0269471 Rosa chinensis HOM05D000336 ORTHO05D000593 3.8e-13 78.2 90 51.1
arahy.Tifrunner.gnm1.ann1.303TEV Arachis hypogaea HOM05D000336 ORTHO05D000593 4.9e-13 77.8 85 54.1
arahy.Tifrunner.gnm1.ann1.F46B23 Arachis hypogaea HOM05D000336 ORTHO05D000593 4.9e-13 77.8 86 52.3
FvH4_2g11150 Fragaria vesca HOM05D000336 ORTHO05D000593 4.9e-13 77.8 91 50.5
QL11p026618 Quercus lobata HOM05D000336 ORTHO05D000593 4.9e-13 77.8 84 52.4
Manes.10G094333 Manihot esculenta HOM05D000336 ORTHO05D000593 6.4e-13 77.4 85 54.1
MD10G1057000 Malus domestica HOM05D000336 ORTHO05D000593 8.4e-13 77.0 93 51.6
Glyma.15G060200 Glycine max HOM05D000336 ORTHO05D000593 1.1e-12 76.6 88 54.5
Sed0024361 Sechium edule HOM05D000336 ORTHO05D000593 1.1e-12 76.6 82 54.9
Solyc01g106280.3 Solanum lycopersicum HOM05D000336 ORTHO05D000593 1.1e-12 76.6 93 50.5
Ciclev10028177m.g Citrus clementina HOM05D000336 ORTHO05D000593 1.4e-12 76.3 83 59.0
Duzib052G0642 Durio zibethinus HOM05D000336 ORTHO05D000593 1.4e-12 76.3 81 55.6
Duzib248G0904 Durio zibethinus HOM05D000336 ORTHO05D000593 1.4e-12 76.3 79 58.2
TWI14G0475 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 1.4e-12 76.3 84 59.5
Glyma.13G254500 Glycine max HOM05D000336 ORTHO05D000593 1.9e-12 75.9 88 53.4
Peaxi162Scf00016g03456 Petunia axillaris HOM05D000336 ORTHO05D000593 1.9e-12 75.9 93 48.4
Potri.001G285700 Populus trichocarpa HOM05D000336 ORTHO05D000593 1.9e-12 75.9 89 52.8
Sabra09G0062000 Salix brachista HOM05D000336 ORTHO05D000593 1.9e-12 75.9 89 53.9
arahy.Tifrunner.gnm1.ann1.JI061M Arachis hypogaea HOM05D000336 ORTHO05D000593 2.4e-12 75.5 86 51.2
FAN24G2211 Fragaria x ananassa HOM05D000336 ORTHO05D000593 2.4e-12 75.5 90 50.0
FAN15G1559 Fragaria x ananassa HOM05D000336 ORTHO05D000593 3.2e-12 75.1 90 50.0
Ca_00182_v3 Cicer arietinum L. HOM05D000336 ORTHO05D000593 4.2e-12 74.7 89 52.8
Potri.009G080000 Populus trichocarpa HOM05D000336 ORTHO05D000593 4.2e-12 74.7 89 51.7
Rhsim05G0096200 Rhododendron simsii HOM05D000336 ORTHO05D000593 4.2e-12 74.7 79 51.9
Lj6g0016097 Lotus japonicus HOM05D000336 ORTHO05D000593 5.4e-12 74.3 87 55.2
Phvul.006G199400 Phaseolus vulgaris HOM05D000336 ORTHO05D000593 5.4e-12 74.3 83 55.4
Lalb_Chr15g0090261 Lupinus albus HOM05D000336 ORTHO05D000593 7.1e-12 73.9 89 53.9
Sabra16G0178100 Salix brachista HOM05D000336 ORTHO05D000593 7.1e-12 73.9 89 51.7
CAN.G504.47 Capsicum annuum HOM05D000336 ORTHO05D000593 9.3e-12 73.6 92 46.7
Ca_17569_v3 Cicer arietinum L. HOM05D000336 ORTHO05D000593 9.3e-12 73.6 83 51.8
Ca_18413_v3 Cicer arietinum L. HOM05D000336 ORTHO05D000593 9.3e-12 73.6 83 51.8
Sopen01g048660 Solanum pennellii HOM05D000336 ORTHO05D000593 9.3e-12 73.6 94 46.8
Psat7g102800 Pisum sativum HOM05D000336 ORTHO05D000593 1.2e-11 73.2 84 52.4
Glyma.15G060300 Glycine max HOM05D000336 ORTHO05D000593 1.6e-11 72.8 86 52.3
Hund06480 Selenicereus undatus HOM05D000336 ORTHO05D000593 1.6e-11 72.8 83 51.8
TPR.G16870 Trifolium pratense HOM05D000336 ORTHO05D000593 2.1e-11 72.4 87 52.9
TAR376G0749 Trochodendron aralioides HOM05D000336 ORTHO05D000593 2.7e-11 72.0 79 55.7
vmacro19596 Vaccinium macrocarpon HOM05D000336 ORTHO05D000593 2.7e-11 72.0 79 50.6
TPR.G16886 Trifolium pratense HOM05D000336 ORTHO05D000593 3.5e-11 71.6 84 51.2
TWI23G0192 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 3.5e-11 71.6 85 56.5
TWI59G0378 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 3.5e-11 71.6 85 56.5
Medtr4g092900 Medicago truncatula HOM05D000336 ORTHO05D000593 4.6e-11 71.2 84 50.0
Sed0007557 Sechium edule HOM05D000336 ORTHO05D000593 4.6e-11 71.2 85 48.2
Medtr4g092880 Medicago truncatula HOM05D000336 ORTHO05D000593 6.0e-11 70.9 84 50.0
TAR625G1523 Trochodendron aralioides HOM05D000336 ORTHO05D000593 7.8e-11 70.5 82 53.7
ClCG09G016470 Citrullus lanatus HOM05D000336 ORTHO05D000593 1.0e-10 70.1 86 46.5
Phvul.006G199500 Phaseolus vulgaris HOM05D000336 ORTHO05D000593 1.0e-10 70.1 83 51.8
VMungo0540G1758 Vigna mungo HOM05D000336 ORTHO05D000593 1.0e-10 70.1 83 53.0
MELO3C018560.2 Cucumis melo HOM05D000336 ORTHO05D000593 2.3e-10 68.9 86 48.8
CsaV3_7G007420 Cucumis sativus L. HOM05D000336 ORTHO05D000593 2.3e-10 68.9 86 46.5
THA.LOC104798515 Tarenaya hassleriana HOM05D000336 ORTHO05D000593 3.9e-10 68.2 79 48.1
Lalb_Chr16g0383081 Lupinus albus HOM05D000336 ORTHO05D000593 6.6e-10 67.4 86 52.3
CANSAT54G0865 Cannabis sativa HOM05D000336 ORTHO05D000593 8.7e-10 67.0 100 44.0
AL6G21080 Arabidopsis lyrata HOM05D000336 ORTHO05D000593 1.1e-09 66.6 77 46.8
CARHR202750 Cardamine hirsuta HOM05D000336 ORTHO05D000593 1.1e-09 66.6 77 46.8
Lalb_Chr18g0060291 Lupinus albus HOM05D000336 ORTHO05D000593 1.1e-09 66.6 83 53.0
Sp2g28720 Schrenkiella parvula HOM05D000336 ORTHO05D000593 1.1e-09 66.6 77 49.4
Aa31LG1G16430 Aethionema arabicum HOM05D000336 ORTHO05D000593 1.5e-09 66.2 76 48.7
EL10Ac9g22128 Beta vulgaris HOM05D000336 ORTHO05D000593 1.5e-09 66.2 84 45.2
Carub.0006s0903 Capsella rubella HOM05D000336 ORTHO05D000593 1.5e-09 66.2 77 46.8
THA.LOC104806093 Tarenaya hassleriana HOM05D000336 ORTHO05D000593 1.9e-09 65.9 78 50.0
AT5G10550 Arabidopsis thaliana HOM05D000336 ORTHO05D000593 2.5e-09 65.5 77 45.5
Sc18g0007180 Simmondsia chinensis HOM05D000336 ORTHO05D000593 2.5e-09 65.5 77 50.6
Ah.01g024180 Amaranthus hybridus HOM05D000336 ORTHO05D000593 3.3e-09 65.1 81 50.6
Thhalv10003870m.g Eutrema salsugineum HOM05D000336 ORTHO05D000593 3.3e-09 65.1 77 48.1
PGR031G2905 Punica granatum HOM05D000336 ORTHO05D000593 3.3e-09 65.1 85 47.1
Aa31LG3G16520 Aethionema arabicum HOM05D000336 ORTHO05D000593 4.3e-09 64.7 77 48.1
ATR0800G076 Amborella trichopoda HOM05D000336 ORTHO05D000593 4.3e-09 64.7 90 47.8
BcaC01g02850 Brassica carinata HOM05D000336 ORTHO05D000593 4.3e-09 64.7 79 46.8
A06p32470 Brassica napus HOM05D000336 ORTHO05D000593 4.3e-09 64.7 79 45.6
BraA06t26171Z Brassica rapa HOM05D000336 ORTHO05D000593 4.3e-09 64.7 79 45.6
CSS0017677 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 4.3e-09 64.7 85 48.2
CSS0048144 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 4.3e-09 64.7 85 48.2
Eucgr.I00604 Eucalyptus grandis HOM05D000336 ORTHO05D000593 4.3e-09 64.7 81 49.4
C03p60120 Brassica napus HOM05D000336 ORTHO05D000593 5.6e-09 64.3 79 46.8
BolC3t18276H Brassica oleracea HOM05D000336 ORTHO05D000593 5.6e-09 64.3 79 46.8
AL8G43220 Arabidopsis lyrata HOM05D000336 ORTHO05D000593 7.3e-09 63.9 76 46.1
AT5G65630 Arabidopsis thaliana HOM05D000336 ORTHO05D000593 7.3e-09 63.9 76 46.1
BcaB01g05520 Brassica carinata HOM05D000336 ORTHO05D000593 7.3e-09 63.9 77 44.2
A03p04650 Brassica napus HOM05D000336 ORTHO05D000593 7.3e-09 63.9 77 44.2
C03p05330 Brassica napus HOM05D000336 ORTHO05D000593 7.3e-09 63.9 77 44.2
BolC3t13046H Brassica oleracea HOM05D000336 ORTHO05D000593 7.3e-09 63.9 77 44.2
BraA03t09806Z Brassica rapa HOM05D000336 ORTHO05D000593 7.3e-09 63.9 77 44.2
Lj4g0007650 Lotus japonicus HOM05D000336 ORTHO05D000593 7.3e-09 63.9 112 42.0
CDE07G0195 Ceratophyllum demersum HOM05D000336 ORTHO05D000593 9.6e-09 63.5 75 52.0
Thhalv10012974m.g Eutrema salsugineum HOM05D000336 ORTHO05D000593 9.6e-09 63.5 75 50.7
Ah.01g007250 Amaranthus hybridus HOM05D000336 ORTHO05D000593 1.3e-08 63.2 83 49.4
Carub.0008s2650 Capsella rubella HOM05D000336 ORTHO05D000593 1.3e-08 63.2 77 46.8
Sp6g32880 Schrenkiella parvula HOM05D000336 ORTHO05D000593 1.3e-08 63.2 78 43.6
SGA_v2.0_scaffold83G26395 Striga asiatica HOM05D000336 ORTHO05D000593 1.3e-08 63.2 88 45.5
TAR381G0068 Trochodendron aralioides HOM05D000336 ORTHO05D000593 2.1e-08 62.4 82 51.2
TAR381G1197 Trochodendron aralioides HOM05D000336 ORTHO05D000593 2.1e-08 62.4 82 51.2
CDE04G1675 Ceratophyllum demersum HOM05D000336 ORTHO05D000593 2.8e-08 62.0 79 46.8
Cc07_g07840 Coffea canephora HOM05D000336 ORTHO05D000593 2.8e-08 62.0 79 44.3
CiPaw.07G042300 Carya illinoinensis HOM05D000336 ORTHO05D000593 3.6e-08 61.6 85 44.7
Nitab4.5_0005163g0070 Nicotiana tabacum HOM05D000336 ORTHO05D000593 3.6e-08 61.6 99 42.4
Peaxi162Scf00703g00025 Petunia axillaris HOM05D000336 ORTHO05D000593 6.2e-08 60.8 79 49.4
Actinidia22783 Actinidia chinensis HOM05D000336 ORTHO05D000593 8.1e-08 60.5 79 48.1
Haze_03933 Corylus avellana HOM05D000336 ORTHO05D000593 8.1e-08 60.5 89 44.9
Nn1g05678 Nelumbo nucifera HOM05D000336 ORTHO05D000593 8.1e-08 60.5 91 41.8
unitig_0.g891 Utricularia gibba HOM05D000336 ORTHO05D000593 8.1e-08 60.5 91 44.0
CDE04G0618 Ceratophyllum demersum HOM05D000336 ORTHO05D000593 1.1e-07 60.1 74 51.4
Dinv09092 Davidia involucrata HOM05D000336 ORTHO05D018162 1.1e-07 60.1 75 56.0
Dinv12577 Davidia involucrata HOM05D000336 ORTHO05D018162 1.1e-07 60.1 75 56.0
CANSAT01G2796 Cannabis sativa HOM05D000336 ORTHO05D000593 1.4e-07 59.7 84 42.9
CDE06G0426 Ceratophyllum demersum HOM05D000336 ORTHO05D000593 1.4e-07 59.7 79 46.8
SHI12182 Sapria himalayana HOM05D000336 ORTHO05D000593 1.8e-07 59.3 70 50.0
Nitab4.5_0002335g0020 Nicotiana tabacum HOM05D000336 ORTHO05D000593 2.4e-07 58.9 93 40.9
PSO356G0008 Papaver somniferum HOM05D000336 ORTHO05D000593 2.4e-07 58.9 87 41.4
PSO541G1010 Papaver somniferum HOM05D000336 ORTHO05D000593 2.4e-07 58.9 87 41.4
Actinidia16398 Actinidia chinensis HOM05D000336 ORTHO05D000593 3.1e-07 58.5 80 43.8
HPP92_004724 Vanilla planifolia HOM05D000336 ORTHO05D000593 3.1e-07 58.5 90 40.0
AUR62027079 Chenopodium quinoa HOM05D000336 ORTHO05D000593 6.9e-07 57.4 77 48.1
Nitab4.5_0002135g0040 Nicotiana tabacum HOM05D000336 ORTHO05D000593 1.2e-06 56.6 78 43.6
vmacro18036 Vaccinium macrocarpon HOM05D000336 ORTHO05D000593 1.5e-06 56.2 75 45.3
MSTRG.5295 Avicennia marina HOM05D000336 ORTHO05D000593 2.6e-06 55.5 27 88.9
Oeu059889.1 Olea europaea HOM05D000336 ORTHO05D000593 2.6e-06 55.5 27 85.2
Atru.chr6.1355 Acer truncatum HOM05D000336 ORTHO05D018162 4.4e-06 54.7 71 49.3
MSTRG.20253 Avicennia marina HOM05D000336 ORTHO05D000593 4.4e-06 54.7 27 85.2
Nitab4.5_0000291g0050 Nicotiana tabacum HOM05D000336 ORTHO05D000593 4.4e-06 54.7 78 43.6
Oeu010513.1 Olea europaea HOM05D000336 ORTHO05D000593 4.4e-06 54.7 27 85.2
Oeu033794.2 Olea europaea HOM05D000336 ORTHO05D000593 4.4e-06 54.7 27 85.2
Oeu028715.1 Olea europaea HOM05D000336 ORTHO05D000593 5.8e-06 54.3 84 44.0
SEGI_22216 Sequoiadendron giganteum HOM05D000336 ORTHO05D000593 5.8e-06 54.3 81 45.7
SEGI_22030 Sequoiadendron giganteum HOM05D000336 ORTHO05D000593 7.6e-06 53.9 87 42.5
Migut.B00521 Erythranthe guttata HOM05D000336 ORTHO05D000593 9.9e-06 53.5 66 45.5
Rhsim08G0088500 Rhododendron simsii HOM05D000336 ORTHO05D000593 9.9e-06 53.5 74 45.9
SalBow6G0279 Salvia bowleyana HOM05D000336 ORTHO05D000593 9.9e-06 53.5 27 85.2


User provided reference genes

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