Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0191321 Helianthus annuus HOM05D000680 ORTHO05D000738 3.8e-44 181.0 86 100.0
HanXRQChr00c0702g0576851 Helianthus annuus HOM05D000680 ORTHO05D000738 2.7e-26 121.7 59 100.0
HanXRQChr01g0020391 Helianthus annuus HOM05D000680 ORTHO05D000738 2.7e-26 121.7 59 100.0
HanXRQChr02g0041541 Helianthus annuus HOM05D000680 ORTHO05D000738 2.7e-26 121.7 59 100.0
HanXRQChr02g0044931 Helianthus annuus HOM05D000680 ORTHO05D000738 2.7e-26 121.7 59 100.0
HanXRQChr07g0200991 Helianthus annuus HOM05D000680 ORTHO05D000738 2.7e-26 121.7 59 100.0
HanXRQChr08g0210321 Helianthus annuus HOM05D000680 ORTHO05D000738 2.7e-26 121.7 59 100.0
HanXRQChr10g0289231 Helianthus annuus HOM05D000680 ORTHO05D000738 2.7e-26 121.7 59 100.0
HanXRQChr11g0326791 Helianthus annuus HOM05D000680 ORTHO05D000738 2.7e-26 121.7 59 100.0
HanXRQCPg0580001 Helianthus annuus HOM05D000680 ORTHO05D000738 2.7e-26 121.7 59 100.0
HanXRQChr04g0120441 Helianthus annuus HOM05D000680 ORTHO05D000738 2.6e-24 115.2 71 80.3
HanXRQChr01g0009281 Helianthus annuus HOM05D000680 ORTHO05D000738 7.5e-24 113.6 59 94.9
Ah.10g027530 Amaranthus hybridus HOM05D000680 ORTHO05D000738 3.7e-23 111.3 59 89.8
Lsat_1_v5_gn_1_98641 Lactuca sativa HOM05D000680 ORTHO05D000738 4.8e-23 110.9 57 93.0
Lsat_1_v5_gn_2_89820 Lactuca sativa HOM05D000680 ORTHO05D000738 4.8e-23 110.9 57 93.0
Lsat_1_v5_gn_3_99261 Lactuca sativa HOM05D000680 ORTHO05D000738 4.8e-23 110.9 57 93.0
Lsat_1_v5_gn_4_102720 Lactuca sativa HOM05D000680 ORTHO05D000738 4.8e-23 110.9 57 93.0
Sc03g0005180 Simmondsia chinensis HOM05D000680 ORTHO05D000738 6.3e-23 110.5 69 76.8
SalBow1G0643 Salvia bowleyana HOM05D000680 ORTHO05D000738 8.3e-23 110.2 57 91.2
SalBow1G8499 Salvia bowleyana HOM05D000680 ORTHO05D000738 8.3e-23 110.2 57 91.2
CDE02G3450 Ceratophyllum demersum HOM05D000680 ORTHO05D000738 2.4e-22 108.6 59 88.1
PGR111G0097 Punica granatum HOM05D000680 ORTHO05D000738 2.4e-22 108.6 59 88.1
CAN.G129.8 Capsicum annuum HOM05D000680 ORTHO05D000738 3.1e-22 108.2 59 84.7
CAN.G219.27 Capsicum annuum HOM05D000680 ORTHO05D000738 3.1e-22 108.2 59 84.7
Solyc00g500064.1 Solanum lycopersicum HOM05D000680 ORTHO05D000738 3.1e-22 108.2 59 84.7
RcHm_v2.0_CPg0502121 Rosa chinensis HOM05D000680 ORTHO05D000738 5.3e-22 107.5 59 86.4
GSVIVG01006210001 Vitis vinifera HOM05D000680 ORTHO05D000738 5.3e-22 107.5 59 86.4
Nn263s45940 Nelumbo nucifera HOM05D000680 ORTHO05D000738 7.0e-22 107.1 59 84.7
Nn265s45950 Nelumbo nucifera HOM05D000680 ORTHO05D000738 7.0e-22 107.1 59 84.7
Ah.02g131550 Amaranthus hybridus HOM05D000680 ORTHO05D000738 3.5e-21 104.8 59 84.7
Hund15470 Selenicereus undatus HOM05D000680 ORTHO05D000738 3.5e-21 104.8 59 84.7
PGSC0003DMG400034122 Solanum tuberosum HOM05D000680 ORTHO05D000738 3.5e-21 104.8 59 81.4
COL.COLO4_00624 Corchorus olitorius HOM05D000680 ORTHO05D000738 4.5e-21 104.4 59 83.1
CAN.G219.24 Capsicum annuum HOM05D000680 ORTHO05D000738 5.9e-21 104.0 59 81.4
EL10Ac2g03511 Beta vulgaris HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
EL10As12g24024 Beta vulgaris HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
EL10As1g23051 Beta vulgaris HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund19840 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund27444 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund27486 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund27873 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund27976 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund28093 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund28100 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund28115 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund28168 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund28300 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund28474 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund28510 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund28723 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund29143 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund29211 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund29365 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund29493 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund29638 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund30195 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund30347 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund30396 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund30456 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund30568 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund30596 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund30927 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund30970 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund31130 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund31179 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund31205 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund31266 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund31300 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Hund31346 Selenicereus undatus HOM05D000680 ORTHO05D000738 7.7e-21 103.6 59 83.1
Gohir.1Z049799 Gossypium hirsutum HOM05D000680 ORTHO05D000738 1.0e-20 103.2 59 81.4
Potri.013G162800 Populus trichocarpa HOM05D000680 ORTHO05D000738 1.0e-20 103.2 59 83.1
Sed0022660 Sechium edule HOM05D000680 ORTHO05D000738 1.0e-20 103.2 59 81.4
Gohir.1Z050092 Gossypium hirsutum HOM05D000680 ORTHO05D000738 1.3e-20 102.8 57 84.2
Gohir.D01G102307 Gossypium hirsutum HOM05D000680 ORTHO05D000738 1.3e-20 102.8 59 81.4
Gorai.013G048500 Gossypium raimondii HOM05D000680 ORTHO05D000738 1.7e-20 102.4 59 81.4
BcaC04g20698 Brassica carinata HOM05D000680 ORTHO05D000738 2.2e-20 102.1 59 83.1
ATCG00480 Arabidopsis thaliana HOM05D000680 ORTHO05D000738 2.9e-20 101.7 59 83.1
Gohir.D02G095301 Gossypium hirsutum HOM05D000680 ORTHO05D000738 2.9e-20 101.7 59 81.4
MD11G1295100 Malus domestica HOM05D000680 ORTHO05D000738 2.9e-20 101.7 57 84.2
AL2G20670 Arabidopsis lyrata HOM05D000680 ORTHO05D000738 3.8e-20 101.3 59 83.1
Gohir.A09G102400 Gossypium hirsutum HOM05D000680 ORTHO05D000738 3.8e-20 101.3 59 79.7
arahy.Tifrunner.gnm1.ann1.487MWI Arachis hypogaea HOM05D000680 ORTHO05D000738 5.0e-20 100.9 59 81.4
BNapus_Darmor_BZH_scaffold_253p00190 Brassica napus HOM05D000680 ORTHO05D000738 5.0e-20 100.9 59 81.4
C02p43500 Brassica napus HOM05D000680 ORTHO05D000738 5.0e-20 100.9 59 81.4
BolSC35t60755H Brassica oleracea HOM05D000680 ORTHO05D000738 5.0e-20 100.9 59 81.4
BolSC46t60996H Brassica oleracea HOM05D000680 ORTHO05D000738 5.0e-20 100.9 59 81.4
BolSC46t61039H Brassica oleracea HOM05D000680 ORTHO05D000738 5.0e-20 100.9 59 81.4
BraA06t25425Z Brassica rapa HOM05D000680 ORTHO05D000738 5.0e-20 100.9 59 81.4
BraSC140t45577Z Brassica rapa HOM05D000680 ORTHO05D000738 5.0e-20 100.9 59 81.4
BraSC25t45844Z Brassica rapa HOM05D000680 ORTHO05D000738 5.0e-20 100.9 59 81.4
BraSC58t46417Z Brassica rapa HOM05D000680 ORTHO05D000738 5.0e-20 100.9 59 81.4
BraSC58t46487Z Brassica rapa HOM05D000680 ORTHO05D000738 5.0e-20 100.9 59 81.4
DCAR_032491 Daucus carota HOM05D000680 ORTHO05D000738 5.0e-20 100.9 59 81.4
RcHm_v2.0_Chr7g0228781 Rosa chinensis HOM05D000680 ORTHO05D000738 6.5e-20 100.5 59 79.7
Nitab4.5_0000248g0030 Nicotiana tabacum HOM05D000680 ORTHO05D000697 8.5e-20 100.1 71 66.2
Nn1g07749 Nelumbo nucifera HOM05D000680 ORTHO05D000738 1.1e-19 99.8 57 80.7
CsaV3_UNG203700 Cucumis sativus L. HOM05D000680 ORTHO05D000738 1.5e-19 99.4 59 79.7
Gohir.A01G140252 Gossypium hirsutum HOM05D000680 ORTHO05D000738 1.5e-19 99.4 56 80.4
LjContig00318g0012400 Lotus japonicus HOM05D000680 ORTHO05D000738 1.9e-19 99.0 59 79.7
arahy.Tifrunner.gnm1.ann1.5XLW1T Arachis hypogaea HOM05D000680 ORTHO05D000738 2.5e-19 98.6 59 79.7
Gohir.D13G043700 Gossypium hirsutum HOM05D000680 ORTHO05D000738 2.5e-19 98.6 59 78.0
Gorai.005G109000 Gossypium raimondii HOM05D000680 ORTHO05D000738 2.5e-19 98.6 59 79.7
BolSC35t60642H Brassica oleracea HOM05D000680 ORTHO05D000738 3.2e-19 98.2 60 81.7
CARHR282070 Cardamine hirsuta HOM05D000680 ORTHO05D000738 3.2e-19 98.2 59 81.4
Medtr3g035730 Medicago truncatula HOM05D000680 ORTHO05D000738 3.2e-19 98.2 59 76.3
Medtr4g451275 Medicago truncatula HOM05D000680 ORTHO05D000738 3.2e-19 98.2 59 76.3
Medtr7g033765 Medicago truncatula HOM05D000680 ORTHO05D000738 3.2e-19 98.2 59 76.3
Medtr7g117920 Medicago truncatula HOM05D000680 ORTHO05D000738 3.2e-19 98.2 59 76.3
Actinidia34903 Actinidia chinensis HOM05D000680 ORTHO05D000738 4.2e-19 97.8 59 76.3
Phvul.004G121666 Phaseolus vulgaris HOM05D000680 ORTHO05D000738 4.2e-19 97.8 59 79.7
arahy.Tifrunner.gnm1.ann1.D1I3TH Arachis hypogaea HOM05D000680 ORTHO05D000738 7.2e-19 97.1 59 79.7
Gohir.A09G130000 Gossypium hirsutum HOM05D000680 ORTHO05D000738 7.2e-19 97.1 59 78.0
Medtr6g055020 Medicago truncatula HOM05D000680 ORTHO05D000738 7.2e-19 97.1 59 76.3
VMungo0354G0001 Vigna mungo HOM05D000680 ORTHO05D000738 7.2e-19 97.1 59 76.3
Thhalv10011087m.g Eutrema salsugineum HOM05D000680 ORTHO05D000738 1.2e-18 96.3 59 78.0
CAN.G678.3 Capsicum annuum HOM05D000680 ORTHO05D000738 1.6e-18 95.9 59 78.0
Medtr7g021780 Medicago truncatula HOM05D000680 ORTHO05D000738 2.7e-18 95.1 59 74.6
PSO548G0091 Papaver somniferum HOM05D000680 ORTHO05D000738 3.6e-18 94.7 59 74.6
Nitab4.5_0000266g0020 Nicotiana tabacum HOM05D000680 ORTHO05D000738 4.7e-18 94.4 60 78.3
Eucgr.F02916 Eucalyptus grandis HOM05D000680 ORTHO05D000738 8.0e-18 93.6 59 74.6
Eucgr.H03409 Eucalyptus grandis HOM05D000680 ORTHO05D000738 2.3e-17 92.0 59 74.6
BolC9t56938H Brassica oleracea HOM05D000680 ORTHO05D000738 8.8e-17 90.1 52 82.7
Sed0023375 Sechium edule HOM05D000680 ORTHO05D000738 1.2e-16 89.7 59 76.3
Lalb_Chr25g0281551 Lupinus albus HOM05D000680 ORTHO05D000738 3.4e-16 88.2 59 71.2
Medtr7g070670 Medicago truncatula HOM05D000680 ORTHO05D000738 3.4e-16 88.2 53 77.4
Zm00001eb039140 Zea mays HOM05D000680 ORTHO05D000738 7.5e-16 87.0 59 64.4
Zm00001eb105270 Zea mays HOM05D000680 ORTHO05D000738 7.5e-16 87.0 59 64.4
Zm00001eb434920 Zea mays HOM05D000680 ORTHO05D000738 7.5e-16 87.0 59 64.4
Zm00001eb435050 Zea mays HOM05D000680 ORTHO05D000738 7.5e-16 87.0 59 64.4
Zm00001eb435190 Zea mays HOM05D000680 ORTHO05D000738 7.5e-16 87.0 59 64.4
Medtr0002s0650 Medicago truncatula HOM05D000680 ORTHO05D000738 4.8e-15 84.3 59 67.8
BolC2t08929H Brassica oleracea HOM05D000680 ORTHO05D000738 8.3e-15 83.6 50 80.0
Oeu050821.1 Olea europaea HOM05D000680 ORTHO05D000738 8.3e-15 83.6 69 60.9
Psat2g136800 Pisum sativum HOM05D000680 ORTHO05D000738 8.3e-15 83.6 59 66.1
CAN.G386.15 Capsicum annuum HOM05D000680 ORTHO05D000738 1.4e-14 82.8 50 76.0
Psat4g098720 Pisum sativum HOM05D000680 ORTHO05D000738 4.1e-14 81.3 48 77.1
SEGI_23109 Sequoiadendron giganteum HOM05D000680 ORTHO05D000738 9.1e-14 80.1 69 59.4
Psat0s1638g0040 Pisum sativum HOM05D000680 ORTHO05D000738 1.2e-13 79.7 69 56.5
Psat0s1661g0080 Pisum sativum HOM05D000680 ORTHO05D000738 1.2e-13 79.7 59 62.7
AUR62032524 Chenopodium quinoa HOM05D000680 ORTHO05D000738 1.6e-13 79.3 40 90.0
SEGI_20135 Sequoiadendron giganteum HOM05D000680 ORTHO05D000738 3.5e-13 78.2 69 59.4
Oeu004819.1 Olea europaea HOM05D000680 ORTHO05D000738 7.7e-13 77.0 50 76.0
Medtr4g010980 Medicago truncatula HOM05D000680 ORTHO05D000738 2.9e-12 75.1 39 87.2
SEGI_21323 Sequoiadendron giganteum HOM05D000680 ORTHO05D000738 6.6e-12 73.9 59 59.3
RhsimPtG0005000 Rhododendron simsii HOM05D000533 ORTHO05D001069 8.6e-12 73.6 71 53.5
Solyc07g021180.3 Solanum lycopersicum HOM05D000680 ORTHO05D000738 8.6e-12 73.6 59 62.7
EL10Ac8g20179 Beta vulgaris HOM05D000680 ORTHO05D000738 3.6e-10 68.2 50 64.0
HanXRQChr00c0345g0573921 Helianthus annuus HOM05D000680 ORTHO05D000738 4.4e-08 61.2 48 70.8
HanXRQChr13g0412351 Helianthus annuus HOM05D000680 ORTHO05D000738 5.7e-08 60.8 27 100.0
EL10Ac4g08673 Beta vulgaris HOM05D000680 ORTHO05D000738 6.3e-07 57.4 59 52.5
GSVIVG01033373001 Vitis vinifera HOM05D000680 ORTHO05D000738 2.4e-06 55.5 37 67.6
Oeu058369.1 Olea europaea HOM05D000680 ORTHO05D000738 3.1e-06 55.1 40 70.0
Eucgr.J02738 Eucalyptus grandis HOM05D000680 ORTHO05D000738 5.4e-06 54.3 25 92.0
Nitab4.5_0012069g0020 Nicotiana tabacum HOM05D000680 ORTHO05D000738 7.0e-06 53.9 58 55.2


User provided reference genes

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