Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0190621 Helianthus annuus HOM05D004905 ORTHO05D005456 2.6e-189 665.6 436 100.0
ECA238G0899 Erigeron canadensis HOM05D004905 ORTHO05D005456 4.8e-95 352.4 483 49.9
Lsat_1_v5_gn_2_80961 Lactuca sativa HOM05D004905 ORTHO05D005456 2.7e-90 336.7 506 46.2
HanXRQChr12g0357381 Helianthus annuus HOM05D004905 ORTHO05D005456 7.8e-77 292.0 468 50.2
ECA232G5032 Erigeron canadensis HOM05D004905 ORTHO05D005456 1.9e-51 207.6 517 42.2
Ciclev10011170m.g Citrus clementina HOM05D004905 ORTHO05D005456 8.1e-50 202.2 237 63.3
Lsat_1_v5_gn_4_155561 Lactuca sativa HOM05D004905 ORTHO05D005456 1.2e-48 198.4 472 39.8
HanXRQChr09g0262681 Helianthus annuus HOM05D004905 ORTHO05D005456 4.4e-48 196.4 509 40.9
Lj4P184T26 Lonicera japonica HOM05D004905 ORTHO05D005456 1.7e-47 194.5 225 66.2
CANSAT11G1581 Cannabis sativa HOM05D004905 ORTHO05D005456 7.8e-45 185.7 293 50.5
Duzib138G0198 Durio zibethinus HOM05D004905 ORTHO05D005456 2.5e-43 180.6 234 45.3
QL02p050316 Quercus lobata HOM05D004905 ORTHO05D005456 2.1e-42 177.6 553 32.7
Cfa007892 Carpinus fangiana HOM05D004905 ORTHO05D005456 3.6e-42 176.8 300 42.3
SalBow3G3699 Salvia bowleyana HOM05D004905 ORTHO05D005456 3.6e-42 176.8 301 48.2
Eucgr.F02791 Eucalyptus grandis HOM05D004905 ORTHO05D005456 4.8e-42 176.4 461 35.1
QL04p012071 Quercus lobata HOM05D004905 ORTHO05D005456 6.2e-42 176.0 366 36.9
Oeu030795.1 Olea europaea HOM05D004905 ORTHO05D005456 1.4e-41 174.9 374 36.9
DCAR_010704 Daucus carota HOM05D004905 ORTHO05D005456 6.9e-41 172.6 538 32.3
Sabra17G0098200 Salix brachista HOM05D004905 ORTHO05D005456 1.2e-40 171.8 293 38.2
RcHm_v2.0_Chr2g0123711 Rosa chinensis HOM05D004905 ORTHO05D005456 2.2e-39 167.5 354 46.9
Gohir.D11G172100 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.9e-38 164.5 516 36.8
MSTRG.23594 Avicennia marina HOM05D004905 ORTHO05D005456 3.2e-38 163.7 490 37.8
Haze_14185 Corylus avellana HOM05D004905 ORTHO05D005456 3.2e-38 163.7 338 39.9
HanXRQChr11g0325151 Helianthus annuus HOM05D004905 ORTHO05D005456 4.2e-38 163.3 498 39.8
COL.COLO4_09375 Corchorus olitorius HOM05D004905 ORTHO05D005456 7.1e-38 162.5 373 35.4
Gorai.007G184500 Gossypium raimondii HOM05D004905 ORTHO05D005456 9.3e-38 162.2 516 36.6
Potri.004G095800 Populus trichocarpa HOM05D004905 ORTHO05D005456 1.2e-37 161.8 518 36.1
CSS0040498 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 1.0e-36 158.7 508 30.1
Atru.chr1.1616 Acer truncatum HOM05D004905 ORTHO05D005456 1.7e-36 157.9 387 44.2
TAR426G0001 Trochodendron aralioides HOM05D004905 ORTHO05D005456 1.7e-36 157.9 464 32.1
TAR535G0011 Trochodendron aralioides HOM05D004905 ORTHO05D005456 3.0e-36 157.1 464 34.7
Aqoxy3G04036 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 3.9e-36 156.8 530 32.8
Dinv33966 Davidia involucrata HOM05D001288 ORTHO05D005456 5.1e-36 156.4 541 37.3
TWI74G1312 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 1.1e-35 155.2 304 37.2
Gohir.A11G165900 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.5e-35 154.8 516 36.6
Nitab4.5_0000753g0160 Nicotiana tabacum HOM05D004905 ORTHO05D005456 2.5e-35 154.1 344 39.0
DCAR_011263 Daucus carota HOM05D004905 ORTHO05D005456 7.3e-35 152.5 349 36.4
Nitab4.5_0011439g0010 Nicotiana tabacum HOM05D004905 ORTHO05D005456 3.6e-34 150.2 344 35.2
Potri.017G118900 Populus trichocarpa HOM05D004905 ORTHO05D005456 3.6e-34 150.2 519 29.1
Sopen02g031010 Solanum pennellii HOM05D004905 ORTHO05D005456 1.2e-32 145.2 283 36.4
Ca_08091_v3 Cicer arietinum L. HOM05D004905 ORTHO05D005456 1.5e-32 144.8 276 34.8
TPR.G16546 Trifolium pratense HOM05D004905 ORTHO05D005456 3.4e-32 143.7 357 31.9
Lalb_Chr04g0257631 Lupinus albus HOM05D004905 ORTHO05D005456 5.8e-32 142.9 356 34.0
PGSC0003DMG400026397 Solanum tuberosum HOM05D004905 ORTHO05D005456 5.8e-32 142.9 282 36.2
TWI53G1125 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 1.3e-31 141.7 473 32.8
Migut.H00239 Erythranthe guttata HOM05D004905 ORTHO05D005456 2.9e-31 140.6 358 43.6
arahy.Tifrunner.gnm1.ann1.00EJBM Arachis hypogaea HOM05D004905 ORTHO05D005456 8.4e-31 139.0 467 36.0
arahy.Tifrunner.gnm1.ann1.VL1078 Arachis hypogaea HOM05D004905 ORTHO05D005456 8.4e-31 139.0 467 36.0
FvH4_1g25551 Fragaria vesca HOM05D004905 ORTHO05D005456 1.1e-30 138.7 349 44.7
FAN28G0686 Fragaria x ananassa HOM05D004905 ORTHO05D005456 1.4e-30 138.3 348 43.7
VMungo0464G1170 Vigna mungo HOM05D004905 ORTHO05D005456 2.4e-30 137.5 365 34.5
FAN19G0313 Fragaria x ananassa HOM05D004905 ORTHO05D005456 3.2e-30 137.1 349 44.4
Prupe.3G148500 Prunus persica HOM05D004905 ORTHO05D005456 4.2e-30 136.7 385 41.0
Medtr7g082660 Medicago truncatula HOM05D004905 ORTHO05D005456 7.1e-30 136.0 355 32.1
Solyc02g086350.3 Solanum lycopersicum HOM05D004905 ORTHO05D005456 7.1e-30 136.0 464 29.7
FAN26G1687 Fragaria x ananassa HOM05D004905 ORTHO05D005456 1.2e-29 135.2 348 43.7
CAN.G625.56 Capsicum annuum HOM05D004905 ORTHO05D005456 2.1e-29 134.4 295 32.5
CDE02G1873 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 4.6e-29 133.3 288 41.0
Peaxi162Scf00877g00001 Petunia axillaris HOM05D004905 ORTHO05D005456 4.6e-29 133.3 373 36.7
Nn3g17953 Nelumbo nucifera HOM05D004905 ORTHO05D005456 7.9e-29 132.5 454 37.9
Psat3g097720 Pisum sativum HOM05D004905 ORTHO05D005456 3.9e-28 130.2 533 26.5
Lj2C439T5 Lonicera japonica HOM05D004905 ORTHO05D005456 6.7e-28 129.4 275 36.4
MD17G1250200 Malus domestica HOM05D004905 ORTHO05D005456 8.7e-28 129.0 372 41.9
Glyma.18G294100 Glycine max HOM05D004905 ORTHO05D005456 1.5e-27 128.3 468 37.2
Carub.0005s1253 Capsella rubella HOM05D004905 ORTHO05D005456 4.3e-27 126.7 380 31.1
BraA07t30992Z Brassica rapa HOM05D004905 ORTHO05D005456 5.6e-27 126.3 271 33.6
Oeu041980.1 Olea europaea HOM05D004905 ORTHO05D005456 5.6e-27 126.3 373 40.5
A07p33640 Brassica napus HOM05D004905 ORTHO05D005456 1.6e-26 124.8 271 33.2
Actinidia15900 Actinidia chinensis HOM05D004905 ORTHO05D005456 2.1e-26 124.4 346 32.1
AL7G52720 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 3.7e-26 123.6 237 43.0
Dinv34793 Davidia involucrata HOM05D004905 ORTHO05D005456 3.7e-26 123.6 324 41.4
Phvul.004G002200 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 3.7e-26 123.6 368 35.1
BolC6t39105H Brassica oleracea HOM05D004905 ORTHO05D005456 6.2e-26 122.9 271 32.8
Aa31LG9G17230 Aethionema arabicum HOM05D004905 ORTHO05D005456 1.4e-25 121.7 287 44.3
Hund13701 Selenicereus undatus HOM05D004905 ORTHO05D005456 1.4e-25 121.7 328 35.1
BcaC08g46129 Brassica carinata HOM05D004905 ORTHO05D005456 1.8e-25 121.3 289 32.5
C06p40220 Brassica napus HOM05D000005 ORTHO05D005456 3.1e-25 120.6 271 32.5
Nn4g23955 Nelumbo nucifera HOM05D004905 ORTHO05D005456 3.1e-25 120.6 273 47.3
Lalb_Chr10g0091451 Lupinus albus HOM05D004905 ORTHO05D005456 6.9e-25 119.4 445 33.7
BraA04t16780Z Brassica rapa HOM05D004905 ORTHO05D005456 9.0e-25 119.0 237 33.3
CARHR058960 Cardamine hirsuta HOM05D004905 ORTHO05D005456 1.5e-24 118.2 384 31.8
Sp7g03910 Schrenkiella parvula HOM05D004905 ORTHO05D005456 1.5e-24 118.2 385 32.5
unitig_899.g14515 Utricularia gibba HOM05D004905 ORTHO05D005456 1.5e-24 118.2 305 31.5
VMungo1383G0301 Vigna mungo HOM05D004905 ORTHO05D005456 2.0e-24 117.9 464 36.0
A04p11140 Brassica napus HOM05D004905 ORTHO05D005456 3.4e-24 117.1 272 30.9
BcaB03g15228 Brassica carinata HOM05D004905 ORTHO05D005456 5.8e-24 116.3 362 31.8
AT5G38150 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 2.2e-23 114.4 300 43.0
C04p44880 Brassica napus HOM05D004905 ORTHO05D005456 2.2e-23 114.4 236 33.1
Carub.0002s1304 Capsella rubella HOM05D004905 ORTHO05D005456 2.2e-23 114.4 381 31.2
Aa31LG2G3310 Aethionema arabicum HOM05D004905 ORTHO05D005456 2.9e-23 114.0 374 28.6
AL2G25050 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 2.9e-23 114.0 375 29.6
THA.LOC104823849 Tarenaya hassleriana HOM05D004905 ORTHO05D005456 6.5e-23 112.8 228 42.1
Thhalv10027702m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 7.1e-22 109.4 300 38.7
Lj1g0028143 Lotus japonicus HOM05D004905 ORTHO05D005456 9.3e-22 109.0 390 36.2
AT1G66840 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 1.2e-21 108.6 384 33.3
arahy.Tifrunner.gnm1.ann1.98PLAU Arachis hypogaea HOM05D004905 ORTHO05D005456 1.2e-21 108.6 383 33.4
arahy.Tifrunner.gnm1.ann1.NNR4KN Arachis hypogaea HOM05D004905 ORTHO05D005456 2.1e-21 107.8 383 33.7
AUR62009040 Chenopodium quinoa HOM05D004905 ORTHO05D005456 2.1e-21 107.8 378 33.6
PSO017G0866 Papaver somniferum HOM05D004905 ORTHO05D005456 2.7e-21 107.5 441 32.4
BcaB06g27171 Brassica carinata HOM05D004905 ORTHO05D005456 6.0e-21 106.3 431 25.8
Cpa.g.sc170.31 Carica papaya HOM05D004905 ORTHO05D005456 7.9e-21 105.9 350 35.7
PSO478G4495 Papaver somniferum HOM05D004905 ORTHO05D005456 2.3e-20 104.4 312 29.8
Sp5g21810 Schrenkiella parvula HOM05D004905 ORTHO05D005456 3.9e-20 103.6 383 29.5
MD09G1256700 Malus domestica HOM05D004905 ORTHO05D005456 8.7e-20 102.4 330 42.1
Gohir.D07G181800 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.9e-19 101.3 171 41.5
Gorai.001G202800 Gossypium raimondii HOM05D004905 ORTHO05D005456 2.5e-19 100.9 171 41.5
Glyma.19G001900 Glycine max HOM05D004905 ORTHO05D005456 3.3e-19 100.5 278 36.0
Gohir.A07G175500 Gossypium hirsutum HOM05D004905 ORTHO05D005456 4.3e-19 100.1 171 40.9
Rhsim10G0072700 Rhododendron simsii HOM05D004905 ORTHO05D005456 4.3e-19 100.1 191 38.7
CDE08G0600 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 1.3e-18 98.6 363 31.4
SGA_v2.0_scaffold202G41468 Striga asiatica HOM05D004905 ORTHO05D005456 1.6e-18 98.2 395 27.3
EL10Ac2g04529 Beta vulgaris HOM05D004905 ORTHO05D005456 2.8e-18 97.4 512 31.8
Thecc.04G128800 Theobroma cacao HOM05D004905 ORTHO05D005456 2.8e-18 97.4 159 39.0
Glyma.02G089100 Glycine max HOM05D001288 ORTHO05D001123 6.3e-18 96.3 354 38.7
HPP92_008194 Vanilla planifolia HOM05D004905 ORTHO05D005456 1.4e-17 95.1 276 41.3
Zm00001eb156080 Zea mays HOM05D004905 ORTHO05D005456 1.4e-17 95.1 315 28.6
vmacro22954 Vaccinium macrocarpon HOM05D004905 ORTHO05D005456 4.1e-17 93.6 193 35.8
Os05g0550100 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 1.5e-16 91.7 226 30.1
CsaV3_2G033850 Cucumis sativus L. HOM05D004905 ORTHO05D005456 4.5e-16 90.1 103 47.6
unitig_37.g12374 Utricularia gibba HOM05D004905 ORTHO05D005456 2.2e-15 87.8 231 34.2
BcaC02g09630 Brassica carinata HOM05D004905 ORTHO05D005456 2.9e-15 87.4 237 29.1
BolC4t26067H Brassica oleracea HOM05D004905 ORTHO05D005456 2.9e-15 87.4 237 29.1
ATR0681G096 Amborella trichopoda HOM05D004905 ORTHO05D005456 5.0e-15 86.7 99 48.5
ClCG11G007710 Citrullus lanatus HOM05D004905 ORTHO05D005456 8.4e-15 85.9 287 34.1
Sed0000790 Sechium edule HOM05D004905 ORTHO05D005456 1.1e-14 85.5 295 33.9
Thhalv10018290m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 1.4e-14 85.1 102 47.1
Sc10g0001050 Simmondsia chinensis HOM05D004905 ORTHO05D005456 1.4e-14 85.1 344 34.6
Cc07_g08530 Coffea canephora HOM05D004905 ORTHO05D005456 1.9e-14 84.7 390 33.3
MELO3C008158.2 Cucumis melo HOM05D004905 ORTHO05D005456 2.5e-14 84.3 102 45.1
Manes.02G071500 Manihot esculenta HOM05D004905 ORTHO05D005456 7.2e-14 82.8 475 31.2
Phvul.008G008400 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 1.6e-13 81.6 353 37.1
AUR62023266 Chenopodium quinoa HOM05D004905 ORTHO05D005456 2.3e-12 77.8 448 30.6
Aqoxy4G01116 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 3.9e-12 77.0 125 40.0
QL06p049807 Quercus lobata HOM05D004905 ORTHO05D005456 5.1e-12 76.6 290 29.7
Hma1.2p1_0500F.1_g167210 Hydrangea macrophylla HOM05D004905 ORTHO05D005456 6.7e-12 76.3 456 33.6
AUR62023221 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.5e-11 75.1 181 32.6
Ah.10g037620 Amaranthus hybridus HOM05D004905 ORTHO05D005456 3.3e-11 73.9 276 34.1
CiPaw.03G064700 Carya illinoinensis HOM05D004905 ORTHO05D005456 3.3e-11 73.9 450 24.2
Sc03g0011630 Simmondsia chinensis HOM05D001827 ORTHO05D001790 4.8e-10 70.1 251 33.1
Glyma.05G002000 Glycine max HOM05D004905 ORTHO05D005456 1.1e-09 68.9 249 40.6
PGR004G1909 Punica granatum HOM05D004905 ORTHO05D005456 1.4e-09 68.6 159 32.1
Ah.06g180970 Amaranthus hybridus HOM05D001827 ORTHO05D001790 1.8e-09 68.2 260 35.4
Sed0007556 Sechium edule HOM05D001827 ORTHO05D001790 2.4e-09 67.8 334 30.8
Glyma.02G301400 Glycine max HOM05D001827 ORTHO05D001790 5.3e-09 66.6 271 24.4
Zm00001eb342860 Zea mays HOM05D004905 ORTHO05D005456 5.9e-08 63.2 299 28.1
CSS0018291 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 7.7e-08 62.8 276 27.9
Oeu046939.1 Olea europaea HOM05D001827 ORTHO05D001790 3.8e-07 60.5 274 33.6
Medtr5g096080 Medicago truncatula HOM05D001827 ORTHO05D001790 1.4e-06 58.5 331 20.8
Os01g0692300 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 5.5e-06 56.6 239 24.3


User provided reference genes

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