Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 8.7e-85 317.0 159 100.0
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 2.3e-37 159.5 176 54.5
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 4.1e-26 122.1 172 48.3
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 1.2e-22 110.5 158 45.6
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 2.3e-21 106.3 147 48.3
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.4e-18 95.1 128 44.5
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.0e-17 93.2 128 43.8
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.0e-17 93.2 128 43.8
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.0e-17 93.2 128 43.8
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-15 87.4 137 40.9
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 3.3e-15 85.9 166 36.7
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.5e-15 84.3 164 39.0
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.6e-14 83.6 164 38.4
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.6e-14 83.6 160 38.8
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 2.8e-14 82.8 137 40.1
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 2.8e-14 82.8 157 37.6
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 6.1e-14 81.6 141 41.8
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 8.0e-14 81.3 130 40.0
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.8e-13 80.1 143 37.8
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 1.8e-13 80.1 171 36.3
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 2.3e-13 79.7 154 38.3
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 4.0e-13 79.0 160 35.6
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.0e-13 79.0 157 38.9
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 4.0e-13 79.0 84 52.4
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 6.8e-13 78.2 170 36.5
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 6.8e-13 78.2 170 35.9
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 8.9e-13 77.8 132 36.4
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.5e-12 77.0 173 35.3
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.5e-12 77.0 121 39.7
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.5e-12 77.0 181 34.8
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 2.0e-12 76.6 151 37.1
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.0e-12 76.6 192 34.4
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.0e-12 76.6 156 36.5
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 2.0e-12 76.6 121 38.8
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 2.6e-12 76.3 153 35.3
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 3.4e-12 75.9 147 37.4
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 3.4e-12 75.9 130 39.2
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 4.4e-12 75.5 116 40.5
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 4.4e-12 75.5 116 40.5
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 4.4e-12 75.5 116 40.5
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 4.4e-12 75.5 116 40.5
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 4.4e-12 75.5 116 40.5
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 4.4e-12 75.5 116 40.5
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 4.4e-12 75.5 116 40.5
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 4.4e-12 75.5 116 40.5
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 4.4e-12 75.5 116 40.5
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 4.4e-12 75.5 158 34.8
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 5.7e-12 75.1 157 34.4
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 5.7e-12 75.1 175 33.1
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 7.5e-12 74.7 138 40.6
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 7.5e-12 74.7 138 40.6
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 7.5e-12 74.7 172 35.5
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 7.5e-12 74.7 162 35.8
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 9.8e-12 74.3 150 38.0
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 9.8e-12 74.3 116 40.5
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 9.8e-12 74.3 117 38.5
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 9.8e-12 74.3 159 36.5
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 9.8e-12 74.3 118 38.1
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 1.3e-11 73.9 119 39.5
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.3e-11 73.9 174 33.3
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 1.3e-11 73.9 174 33.3
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 1.3e-11 73.9 171 33.9
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.2e-11 73.2 126 36.5
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 2.9e-11 72.8 157 33.8
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 2.9e-11 72.8 157 33.8
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 2.9e-11 72.8 157 33.8
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 3.7e-11 72.4 147 37.4
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 3.7e-11 72.4 147 37.4
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 3.7e-11 72.4 92 53.3
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 3.7e-11 72.4 152 34.9
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.9e-11 72.0 174 32.8
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 6.4e-11 71.6 126 36.5
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 6.4e-11 71.6 137 35.0
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 8.3e-11 71.2 154 35.1
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 8.3e-11 71.2 152 35.5
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.1e-10 70.9 161 34.2
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.4e-10 70.5 133 36.8
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.8e-10 70.1 181 33.7
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.8e-10 70.1 144 35.4
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.2e-10 69.3 136 36.8
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 3.2e-10 69.3 176 33.5
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 4.1e-10 68.9 132 36.4
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 5.4e-10 68.6 174 35.1
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 5.4e-10 68.6 131 35.9
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 7.0e-10 68.2 166 35.5
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 7.0e-10 68.2 131 35.9
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.6e-09 67.0 167 32.3
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 2.7e-09 66.2 163 33.7
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 2.7e-09 66.2 114 36.0
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 3.5e-09 65.9 137 38.0
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 3.5e-09 65.9 151 35.8
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 3.5e-09 65.9 94 43.6
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.9e-09 65.1 130 36.2
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.3e-08 63.9 130 35.4
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-08 63.9 130 35.4
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-08 63.9 130 35.4
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-08 63.9 130 35.4
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.3e-08 63.9 118 37.3
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.7e-08 63.5 159 33.3
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.7e-08 63.5 115 37.4
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.7e-08 63.5 115 37.4
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 1.7e-08 63.5 159 31.4
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 2.3e-08 63.2 108 37.0
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 2.3e-08 63.2 130 35.4
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 3.0e-08 62.8 173 31.8
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.0e-08 62.0 130 34.6
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.1e-07 60.8 156 32.1
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 2.5e-07 59.7 79 49.4
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 5.6e-07 58.5 121 34.7
ECA246G0407 Erigeron canadensis HOM05D005092 ORTHO05D189067 7.3e-07 58.2 69 50.7


User provided reference genes

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