Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 5.3e-130 467.6 225 100.0
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 2.0e-113 412.5 225 87.1
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 8.0e-110 400.6 225 85.8
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 2.0e-105 386.0 225 84.0
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.8e-98 362.8 225 76.9
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.8e-98 362.8 225 76.9
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 3.2e-98 362.1 225 75.1
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 4.1e-98 361.7 225 75.6
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 3.9e-96 355.1 225 72.4
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.1e-95 353.6 225 74.2
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 1.1e-95 353.6 225 73.3
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 1.1e-95 353.6 225 73.3
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.9e-95 352.8 226 74.8
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.9e-95 352.8 226 74.8
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.9e-95 352.8 225 72.9
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.9e-95 352.8 223 73.1
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 2.5e-95 352.4 225 74.7
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 4.3e-95 351.7 225 72.4
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 7.3e-95 350.9 225 72.0
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 7.3e-95 350.9 225 72.4
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 1.6e-94 349.7 225 72.0
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 2.8e-94 349.0 225 72.0
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 3.6e-94 348.6 225 72.4
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 4.7e-94 348.2 225 72.0
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 6.2e-94 347.8 225 71.6
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 1.0e-93 347.1 225 73.3
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 1.4e-93 346.7 225 73.3
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 2.3e-93 345.9 224 73.2
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 2.3e-93 345.9 225 71.1
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 4.0e-93 345.1 225 72.0
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 6.8e-93 344.4 225 70.7
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 6.8e-93 344.4 225 71.6
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.2e-92 343.6 225 71.1
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.2e-92 343.6 225 71.1
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 1.5e-92 343.2 225 71.6
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 2.0e-92 342.8 225 72.0
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.6e-92 342.4 225 70.2
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 2.6e-92 342.4 225 70.7
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.4e-92 342.0 225 73.8
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 4.4e-92 341.7 225 70.7
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.4e-92 341.7 225 72.0
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 5.8e-92 341.3 224 71.0
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 5.8e-92 341.3 225 69.8
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 7.5e-92 340.9 225 73.8
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 1.7e-91 339.7 225 72.0
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.7e-91 339.7 225 73.3
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 2.9e-91 339.0 225 69.8
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 2.9e-91 339.0 225 70.7
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 6.4e-91 337.8 225 71.1
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 6.4e-91 337.8 225 69.3
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.1e-90 337.0 223 70.4
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 1.1e-90 337.0 225 70.7
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.4e-90 336.7 225 69.3
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 1.4e-90 336.7 225 70.7
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.9e-90 336.3 225 70.7
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.9e-90 336.3 225 71.1
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 5.4e-90 334.7 225 71.1
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 1.2e-89 333.6 226 69.5
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 1.6e-89 333.2 225 69.8
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 1.6e-89 333.2 225 69.3
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 3.5e-89 332.0 226 69.9
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 6.0e-89 331.3 225 68.9
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 3.9e-88 328.6 225 68.0
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 5.0e-88 328.2 227 68.7
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 6.6e-88 327.8 225 68.4
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 8.6e-88 327.4 225 68.0
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 1.9e-87 326.2 225 67.6
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 1.9e-87 326.2 226 67.7
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 2.5e-87 325.9 225 67.6
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 2.5e-87 325.9 225 67.6
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 2.5e-87 325.9 225 68.4
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 4.3e-87 325.1 225 67.6
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 7.3e-87 324.3 225 68.9
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 2.8e-86 322.4 225 66.2
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 1.1e-85 320.5 279 57.7
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 1.4e-85 320.1 225 67.1
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.8e-85 319.7 266 60.2
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 5.2e-85 318.2 228 66.2
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 1.5e-84 316.6 225 66.7
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 7.5e-84 314.3 225 64.4
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 9.8e-84 313.9 260 60.4
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 2.9e-83 312.4 197 74.6
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 4.9e-83 311.6 208 70.2
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 8.3e-83 310.8 197 72.6
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 1.4e-82 310.1 225 63.6
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 2.4e-82 309.3 225 63.6
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 4.1e-82 308.5 225 65.8
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 7.1e-82 307.8 225 64.0
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 7.8e-81 304.3 225 63.1
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 1.7e-80 303.1 225 63.6
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 5.1e-80 301.6 225 61.8
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 1.1e-79 300.4 225 64.0
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 1.5e-79 300.1 225 63.1
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 1.5e-79 300.1 232 61.6
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 7.3e-79 297.7 225 63.1
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 9.5e-79 297.4 225 63.6
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.6e-78 296.6 228 63.2
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 3.6e-78 295.4 226 61.5
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 3.1e-77 292.4 225 62.2
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 8.9e-77 290.8 227 60.8
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 8.9e-77 290.8 227 60.4
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 8.9e-77 290.8 218 62.8
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.7e-75 286.6 225 62.2
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 6.4e-75 284.6 225 62.2
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 3.2e-74 282.3 229 59.8
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 1.0e-72 277.3 227 59.9
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 1.7e-72 276.6 225 61.8
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 3.3e-71 272.3 177 70.1
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 6.2e-70 268.1 200 62.5
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 5.8e-68 261.5 226 58.4
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 7.6e-68 261.2 225 60.0
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 4.2e-66 255.4 259 54.1
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 4.2e-66 255.4 259 54.1
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 4.2e-66 255.4 210 58.1
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 4.6e-65 251.9 225 57.8
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 1.7e-64 250.0 244 54.1
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 6.6e-64 248.1 229 57.2
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 3.6e-62 242.3 225 52.9
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.1e-61 240.7 174 65.5
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 4.9e-59 231.9 250 53.2
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 8.7e-56 221.1 225 48.9
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 1.4e-53 213.8 225 48.4
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 2.0e-52 209.9 164 61.6
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 9.3e-50 201.1 225 45.8
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.4e-45 186.4 122 68.0
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 4.0e-45 185.7 231 43.7
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 6.9e-45 184.9 228 43.4
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 4.5e-44 182.2 205 44.4
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.6e-38 163.7 100 74.0
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 8.2e-38 161.4 100 73.0
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 1.8e-37 160.2 130 58.5
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 3.9e-32 142.5 150 49.3
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 1.6e-30 137.1 195 41.0
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.1e-23 114.4 70 68.6
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 3.2e-18 96.3 105 51.4
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 3.2e-18 96.3 66 59.1
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.6e-17 94.0 79 59.5
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 2.1e-17 93.6 74 64.9
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.1e-17 93.6 57 77.2
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.1e-17 92.0 51 78.4
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.1e-17 92.0 51 78.4
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.4e-16 90.9 51 78.4
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 1.4e-16 90.9 81 55.6
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 2.8e-14 83.2 122 43.4
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 9.1e-13 78.2 223 29.6
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 5.9e-12 75.5 51 66.7
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.2e-11 73.6 51 70.6
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 5.0e-11 72.4 51 68.6
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 2.0e-07 60.5 37 70.3
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 3.3e-07 59.7 53 56.6


User provided reference genes

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