Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 9.6e-259 896.3 463 100.0
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 6.6e-127 458.4 478 56.7
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 4.2e-105 386.0 482 51.7
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 2.1e-64 250.8 464 39.4
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 2.1e-56 224.2 483 37.9
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 2.2e-53 214.2 480 37.1
Lsat_1_v5_gn_3_5860 Lactuca sativa HOM05D002524 ORTHO05D002718 3.7e-53 213.4 472 36.4
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 1.1e-52 211.8 490 36.7
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 3.2e-52 210.3 471 36.9
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 9.2e-52 208.8 480 34.8
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 3.5e-51 206.8 493 35.7
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 6.6e-50 202.6 470 34.3
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 6.6e-50 202.6 494 35.6
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 3.3e-49 200.3 498 34.5
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 5.6e-49 199.5 466 36.1
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 7.3e-49 199.1 511 35.4
ECA246G0913 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.2e-48 198.4 469 36.9
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 2.8e-48 197.2 479 36.1
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 3.6e-48 196.8 474 35.4
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 3.6e-48 196.8 507 33.1
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 8.0e-48 195.7 470 34.5
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.0e-47 195.3 493 33.5
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.4e-47 194.9 494 34.6
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 1.8e-47 194.5 473 35.3
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 1.8e-47 194.5 474 35.4
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 1.2e-46 191.8 464 34.7
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 1.5e-46 191.4 514 32.9
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 1.5e-46 191.4 499 34.1
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 2.6e-46 190.7 476 34.7
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 2.6e-46 190.7 491 33.0
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 2.2e-45 187.6 498 33.7
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 3.7e-45 186.8 510 33.3
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 8.3e-45 185.7 479 33.8
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.9e-44 184.5 511 33.9
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 2.4e-44 184.1 479 32.6
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 3.2e-44 183.7 486 33.7
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 7.0e-44 182.6 482 34.0
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 1.6e-43 181.4 468 32.9
DCAR_006762 Daucus carota HOM05D002977 ORTHO05D003225 2.7e-43 180.6 391 37.3
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 4.6e-43 179.9 475 34.3
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 2.3e-42 177.6 461 33.4
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 3.9e-42 176.8 482 33.6
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 1.1e-41 175.3 480 32.5
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 1.9e-41 174.5 495 30.9
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 2.5e-41 174.1 472 32.6
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 1.2e-40 171.8 475 33.9
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.6e-40 171.4 492 31.7
Lj2A196T48 Lonicera japonica HOM05D002977 ORTHO05D003225 1.4e-39 168.3 326 40.5
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 2.3e-39 167.5 490 33.1
Sed0005409 Sechium edule HOM05D002977 ORTHO05D003225 3.4e-38 163.7 455 33.8
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.7e-37 161.4 483 31.5
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 2.2e-37 161.0 505 30.3
CSS0002536 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 6.4e-37 159.5 441 33.1
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 1.1e-36 158.7 494 30.6
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 9.2e-36 155.6 452 31.0
CiPaw.12G098800 Carya illinoinensis HOM05D002977 ORTHO05D003225 1.6e-35 154.8 514 30.5
Lj4g0001816 Lotus japonicus HOM05D002977 ORTHO05D003225 2.7e-35 154.1 472 32.2
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.7e-34 151.4 473 30.2
Glyma.05G050000 Glycine max HOM05D002977 ORTHO05D003225 1.7e-34 151.4 482 30.1
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 2.3e-34 151.0 491 31.0
PGR042G2476 Punica granatum HOM05D002977 ORTHO05D003225 6.6e-34 149.4 490 31.4
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.9e-33 147.9 454 30.4
Glyma.17G132000 Glycine max HOM05D002977 ORTHO05D003225 1.9e-33 147.9 479 31.5
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 7.3e-33 146.0 479 31.5
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 9.5e-33 145.6 445 29.4
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 1.2e-32 145.2 450 30.2
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 1.2e-32 145.2 450 30.2
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 4.7e-32 143.3 369 35.0
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 6.2e-32 142.9 489 30.5
Sp7g21110 Schrenkiella parvula HOM05D002977 ORTHO05D003225 1.4e-31 141.7 484 30.6
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 2.3e-31 141.0 370 35.1
arahy.Tifrunner.gnm1.ann1.ELA92E Arachis hypogaea HOM05D002977 ORTHO05D003225 3.1e-31 140.6 480 29.6
A01p14320 Brassica napus HOM05D002977 ORTHO05D003225 5.2e-31 139.8 459 30.9
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 5.2e-31 139.8 373 34.0
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 1.5e-30 138.3 469 30.5
arahy.Tifrunner.gnm1.ann1.BQI3IB Arachis hypogaea HOM05D002977 ORTHO05D003225 2.0e-30 137.9 489 28.8
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 2.6e-30 137.5 464 27.2
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 2.6e-30 137.5 464 27.2
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 3.4e-30 137.1 482 31.5
Lalb_Chr05g0225091 Lupinus albus HOM05D002977 ORTHO05D003225 5.8e-30 136.3 478 29.7
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 9.9e-30 135.6 485 28.0
Thhalv10025169m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 4.9e-29 133.3 461 30.4
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 4.9e-29 133.3 512 28.5
BcaC09g51034 Brassica carinata HOM05D002977 ORTHO05D003225 1.4e-28 131.7 463 29.6
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 3.2e-28 130.6 468 30.1
C01p17640 Brassica napus HOM05D002977 ORTHO05D003225 3.2e-28 130.6 482 28.8
CARHR230080 Cardamine hirsuta HOM05D002977 ORTHO05D003225 9.2e-28 129.0 442 29.6
CARHR254530 Cardamine hirsuta HOM05D002977 ORTHO05D003225 1.2e-27 128.6 481 29.7
BraA09t38300Z Brassica rapa HOM05D002977 ORTHO05D003225 3.5e-27 127.1 474 27.8
A09p27340 Brassica napus HOM05D002977 ORTHO05D003225 4.6e-27 126.7 473 28.5
Aa31LG9G10650 Aethionema arabicum HOM05D002977 ORTHO05D003225 1.0e-26 125.6 464 26.3
BraA01t01377Z Brassica rapa HOM05D002977 ORTHO05D003225 2.5e-25 120.9 476 28.2
Ciclev10023936m.g Citrus clementina HOM05D002977 ORTHO05D003225 2.5e-25 120.9 248 38.3
Thhalv10028604m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 6.2e-24 116.3 493 27.2
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 8.1e-24 115.9 484 28.1
GSVIVG01019863001 Vitis vinifera HOM05D002977 ORTHO05D003225 8.1e-24 115.9 256 36.7
AT4G23020 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 1.1e-23 115.5 457 25.8
THA.LOC104806370 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 1.8e-23 114.8 491 28.7
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 3.1e-23 114.0 476 27.3
Ah.12g057650 Amaranthus hybridus HOM05D002977 ORTHO05D003225 1.2e-22 112.1 450 29.1
BcaB01g01677 Brassica carinata HOM05D002977 ORTHO05D003225 1.2e-22 112.1 455 27.7
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 1.5e-22 111.7 445 27.4
AL6G46490 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 2.0e-22 111.3 501 25.5
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 2.0e-22 111.3 442 30.3
AT4G11780 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 3.4e-22 110.5 497 27.8
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 4.4e-22 110.2 420 29.5
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 1.7e-21 108.2 462 28.4
Sp6g05680 Schrenkiella parvula HOM05D002977 ORTHO05D003225 6.4e-21 106.3 491 26.9
Carub.0006s3089 Capsella rubella HOM05D002977 ORTHO05D003225 1.4e-20 105.1 516 25.0
BcaB05g23809 Brassica carinata HOM05D002977 ORTHO05D003225 1.9e-20 104.8 462 27.3
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 1.9e-20 104.8 211 35.5
Carub.0007s1825 Capsella rubella HOM05D002977 ORTHO05D003225 2.4e-20 104.4 468 25.6
BolC9t56312H Brassica oleracea HOM05D002977 ORTHO05D003225 4.2e-20 103.6 489 25.6
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 4.2e-20 103.6 446 26.9
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 4.2e-20 103.6 494 26.1
C09p34660 Brassica napus HOM05D002977 ORTHO05D003225 5.4e-20 103.2 484 26.0
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 2.1e-19 101.3 507 26.8
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 2.3e-18 97.8 462 27.9
CANSAT56G0238 Cannabis sativa HOM05D002977 ORTHO05D003225 3.0e-18 97.4 462 27.9
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 1.1e-17 95.5 439 28.0
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 2.5e-17 94.4 474 25.7
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 5.6e-17 93.2 475 27.6
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 6.2e-16 89.7 480 25.2
BolC2t10166H Brassica oleracea HOM05D002977 ORTHO05D003225 1.1e-15 89.0 440 25.0
BcaC03g16329 Brassica carinata HOM05D002977 ORTHO05D003225 1.8e-15 88.2 456 25.4
C02p41490 Brassica napus HOM05D002977 ORTHO05D003225 1.8e-15 88.2 456 25.4
Actinidia14518 Actinidia chinensis HOM05D000078 ORTHO05D003225 3.1e-15 87.4 306 33.0
Actinidia33447 Actinidia chinensis HOM05D002977 ORTHO05D003225 4.0e-15 87.0 444 27.5
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 4.0e-15 87.0 441 25.9
PSO782G0819 Papaver somniferum HOM05D002977 ORTHO05D003225 6.9e-15 86.3 557 24.2
Oeu062354.1 Olea europaea HOM05D002977 ORTHO05D003225 1.5e-14 85.1 112 41.1
AL7G30500 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 2.0e-14 84.7 444 25.0
FAN10G1938 Fragaria x ananassa HOM05D002977 ORTHO05D003225 4.5e-14 83.6 458 25.1
Sabra14G0054900 Salix brachista HOM05D002977 ORTHO05D003225 4.5e-14 83.6 477 25.8
PSO478G2989 Papaver somniferum HOM05D002977 ORTHO05D003225 5.8e-14 83.2 555 24.3
A02p26000 Brassica napus HOM05D002977 ORTHO05D003225 7.6e-14 82.8 460 25.2
FAN10G0205 Fragaria x ananassa HOM05D002977 ORTHO05D003225 7.6e-14 82.8 457 24.9
Hma1.2p1_0371F.1_g138190 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 1.3e-13 82.0 165 35.2
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 1.7e-13 81.6 459 27.0
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 3.8e-13 80.5 432 23.8
FAN06G3334 Fragaria x ananassa HOM05D002977 ORTHO05D003225 4.9e-13 80.1 446 25.1
BraA02t07599Z Brassica rapa HOM05D002977 ORTHO05D003225 8.4e-13 79.3 468 24.8
Prupe.2G153900 Prunus persica HOM05D002977 ORTHO05D003225 8.4e-13 79.3 464 25.0
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 1.1e-12 79.0 478 26.6
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 1.1e-12 79.0 467 27.0
FvH4_7g12980 Fragaria vesca HOM05D002977 ORTHO05D003225 1.4e-12 78.6 446 24.7
MD04G1068300 Malus domestica HOM05D002977 ORTHO05D003225 1.4e-12 78.6 238 31.1
Glyma.01G215900 Glycine max HOM05D002977 ORTHO05D003225 3.2e-12 77.4 453 26.5
MD07G1125600 Malus domestica HOM05D002977 ORTHO05D003225 3.2e-12 77.4 472 24.8
Potri.014G077400 Populus trichocarpa HOM05D002977 ORTHO05D003225 4.2e-12 77.0 485 24.1
FAN06G4128 Fragaria x ananassa HOM05D002977 ORTHO05D003225 5.4e-12 76.6 449 24.9
MD01G1047600 Malus domestica HOM05D002977 ORTHO05D003225 5.4e-12 76.6 466 24.5
Cpa.g.sc74.83 Carica papaya HOM05D002977 ORTHO05D003225 9.3e-12 75.9 168 32.1
AUR62017299 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.2e-11 75.5 374 26.5
VMungo0331G1467 Vigna mungo HOM05D002977 ORTHO05D003225 1.2e-11 75.5 450 25.6
Nitab4.5_0000134g0230 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.6e-11 75.1 443 27.1
Haze_15232 Corylus avellana HOM05D002977 ORTHO05D003225 4.6e-11 73.6 461 24.3
DCAR_008585 Daucus carota HOM05D002977 ORTHO05D003225 7.9e-11 72.8 352 27.0
Lalb_Chr16g0379981 Lupinus albus HOM05D002977 ORTHO05D003225 1.0e-10 72.4 463 25.3
Nitab4.5_0004550g0040 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.8e-10 71.6 453 24.1
A03p32000 Brassica napus HOM05D002977 ORTHO05D003225 2.3e-10 71.2 455 25.3
Cfa004177 Carpinus fangiana HOM05D002977 ORTHO05D003225 3.0e-10 70.9 456 24.8
BcaC01g06858 Brassica carinata HOM05D002977 ORTHO05D003225 5.1e-10 70.1 451 25.1
BcaB03g11755 Brassica carinata HOM05D002977 ORTHO05D003225 8.7e-10 69.3 300 29.7
Eucgr.E00527 Eucalyptus grandis HOM05D002977 ORTHO05D003225 8.7e-10 69.3 168 30.4
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 8.7e-10 69.3 444 24.1
Glyma.07G079500 Glycine max HOM05D002977 ORTHO05D003225 1.5e-09 68.6 446 24.0
C03p39020 Brassica napus HOM05D002977 ORTHO05D003225 1.9e-09 68.2 457 24.7
BolC3t16174H Brassica oleracea HOM05D002977 ORTHO05D003225 1.9e-09 68.2 457 24.7
FAN01G0110 Fragaria x ananassa HOM05D002977 ORTHO05D003225 3.3e-09 67.4 470 23.2
BraA03t12372Z Brassica rapa HOM05D002977 ORTHO05D003225 7.4e-09 66.2 448 24.8
Ciclev10020246m.g Citrus clementina HOM05D002977 ORTHO05D003225 7.4e-09 66.2 464 24.8
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 1.3e-08 65.5 444 23.9
Nitab4.5_0003356g0060 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.6e-08 65.1 127 34.6
Sc01g0008790 Simmondsia chinensis HOM05D002977 ORTHO05D003225 6.2e-08 63.2 321 26.8
SGA_v2.0_scaffold153G37063 Striga asiatica HOM05D002977 ORTHO05D003225 8.1e-08 62.8 280 25.0
BcaB01g02155 Brassica carinata HOM05D002977 ORTHO05D003225 1.4e-07 62.0 448 25.0
MSTRG.20788 Avicennia marina HOM05D002977 ORTHO05D003225 3.1e-07 60.8 439 25.5
C03p84550 Brassica napus HOM05D002977 ORTHO05D003225 4.0e-07 60.5 143 32.9
HanXRQChr06g0168991 Helianthus annuus HOM05D002977 ORTHO05D003225 5.3e-07 60.1 215 27.0
Eucgr.E00281 Eucalyptus grandis HOM05D002977 ORTHO05D003225 9.0e-07 59.3 420 25.7
THA.LOC104801463 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 2.0e-06 58.2 471 25.3
TWI59G0633 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 2.0e-06 58.2 482 22.4
ECA236G0338 Erigeron canadensis HOM05D002977 ORTHO05D003225 2.6e-06 57.8 314 24.5
CAN.G170.54 Capsicum annuum HOM05D002977 ORTHO05D003225 3.4e-06 57.4 454 24.7
Phvul.010G089700 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 3.4e-06 57.4 388 25.8
Glyma.03G017800 Glycine max HOM05D002977 ORTHO05D003225 4.5e-06 57.0 449 23.2
Lj2C196G7 Lonicera japonica HOM05D002977 ORTHO05D003225 4.5e-06 57.0 90 34.4


User provided reference genes

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