Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 4.9e-202 707.6 357 100.0
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 1.0e-130 470.7 362 69.1
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 7.2e-121 438.0 319 72.1
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 1.1e-110 404.1 355 62.0
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 3.7e-109 399.1 317 64.7
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 4.8e-109 398.7 325 63.1
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 5.3e-108 395.2 323 63.2
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 1.2e-107 394.0 354 59.6
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.6e-107 392.9 343 60.9
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 3.5e-107 392.5 332 62.0
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 5.9e-107 391.7 347 61.4
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 1.0e-106 391.0 354 60.5
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 2.2e-106 389.8 318 61.9
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 2.2e-106 389.8 317 64.4
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.2e-106 389.8 354 60.5
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 6.5e-106 388.3 346 59.8
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 8.5e-106 387.9 350 59.4
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 8.5e-106 387.9 323 63.8
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 1.9e-105 386.7 317 64.0
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 2.5e-105 386.3 329 61.7
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 5.5e-105 385.2 323 63.5
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 1.2e-104 384.0 321 61.4
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 1.2e-104 384.0 350 59.1
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 1.6e-104 383.6 367 56.9
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 2.1e-104 383.3 344 58.1
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 2.7e-104 382.9 321 60.4
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 6.1e-104 381.7 317 62.1
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.0e-103 380.9 333 60.4
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.4e-103 380.6 354 58.5
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 3.0e-103 379.4 325 61.5
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 3.0e-103 379.4 328 61.0
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 6.7e-103 378.3 328 60.4
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 6.7e-103 378.3 328 60.4
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 8.8e-103 377.9 341 58.1
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 8.8e-103 377.9 356 57.3
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 8.8e-103 377.9 356 57.3
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 1.2e-102 377.5 318 60.7
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 1.2e-102 377.5 321 60.4
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 4.4e-102 375.6 321 61.7
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 4.4e-102 375.6 308 62.7
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 5.7e-102 375.2 361 56.2
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 5.7e-102 375.2 331 60.4
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 9.7e-102 374.4 346 58.1
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 2.2e-101 373.2 312 60.9
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 2.2e-101 373.2 324 59.9
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 3.7e-101 372.5 317 60.3
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 3.7e-101 372.5 315 60.3
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 6.3e-101 371.7 339 58.7
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 6.3e-101 371.7 321 60.4
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 6.3e-101 371.7 323 61.0
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 1.1e-100 370.9 235 78.7
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.1e-100 370.9 321 60.4
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 1.1e-100 370.9 317 60.9
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 1.4e-100 370.5 321 59.2
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 1.8e-100 370.2 346 56.4
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 2.4e-100 369.8 319 60.2
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 2.4e-100 369.8 327 59.3
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 4.1e-100 369.0 319 58.9
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 4.1e-100 369.0 353 56.7
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 5.3e-100 368.6 319 58.6
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 5.3e-100 368.6 319 58.6
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 5.3e-100 368.6 233 77.3
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 7.0e-100 368.2 318 58.5
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.2e-99 367.5 319 60.2
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 1.6e-99 367.1 339 57.8
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 2.0e-99 366.7 362 55.5
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 3.5e-99 365.9 234 75.6
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 4.5e-99 365.5 350 57.1
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 4.5e-99 365.5 350 56.9
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 4.5e-99 365.5 353 55.8
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 1.0e-98 364.4 318 59.1
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.2e-98 363.2 316 60.8
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 2.9e-98 362.8 327 58.7
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 3.8e-98 362.5 231 73.2
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 3.8e-98 362.5 324 58.0
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 8.5e-98 361.3 321 58.3
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.6e-96 357.1 320 59.1
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.6e-96 357.1 320 59.1
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 1.6e-96 357.1 321 58.3
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 6.1e-96 355.1 233 72.5
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.0e-95 354.4 231 73.2
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 1.4e-95 354.0 320 56.9
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 2.3e-95 353.2 344 54.1
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-95 353.2 230 73.5
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 7.5e-94 348.2 343 53.9
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 1.3e-93 347.4 325 55.7
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 2.8e-93 346.3 344 54.1
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 1.8e-92 343.6 365 50.7
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.2e-91 340.9 237 69.2
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 1.2e-91 340.9 317 55.5
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 2.0e-91 340.1 234 69.7
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 5.9e-91 338.6 365 51.5
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 1.3e-90 337.4 263 63.5
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 9.8e-86 321.2 324 54.6
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 2.8e-85 319.7 431 44.8
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 3.7e-85 319.3 199 76.9
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 2.4e-84 316.6 307 54.1
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 2.7e-83 313.2 243 61.7
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 6.6e-82 308.5 194 77.3
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 1.2e-80 304.3 242 59.9
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 2.3e-79 300.1 235 62.6
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-78 297.4 271 58.3
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 1.2e-72 277.7 197 66.0
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 6.8e-71 271.9 276 56.5
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 5.8e-70 268.9 273 54.9
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 1.8e-63 247.3 271 51.7
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 4.4e-62 242.7 157 73.9
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 1.4e-60 237.7 250 54.0
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 3.0e-58 229.9 160 70.0
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 1.5e-57 227.6 218 55.5
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 6.2e-56 222.2 258 51.2
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 1.1e-55 221.5 130 83.1
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 2.0e-54 217.2 188 55.9
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 8.4e-53 211.8 220 53.2
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 2.7e-51 206.8 171 64.3
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.0e-50 204.9 171 63.7
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 2.2e-45 187.2 228 48.7
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 7.1e-44 182.2 194 55.2
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 9.3e-44 181.8 122 68.9
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-42 177.6 170 58.8
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-42 177.2 169 58.6
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 6.6e-42 175.6 184 54.9
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-40 171.4 158 59.5
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-40 170.6 158 60.8
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 6.2e-40 169.1 173 55.5
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-39 167.5 158 58.9
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 6.9e-39 165.6 160 57.5
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 3.2e-36 156.8 108 73.1
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-35 153.7 142 60.6
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 5.1e-34 149.4 104 69.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 8.7e-34 148.7 158 55.1
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 2.1e-32 144.1 106 66.0
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 8.1e-32 142.1 161 53.4
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 8.1e-32 142.1 161 53.4
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 1.2e-30 138.3 212 46.2
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-29 134.8 123 60.2
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-29 134.4 122 59.8
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 8.4e-29 132.1 94 73.4
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-28 131.7 107 66.4
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.9e-28 131.0 88 70.5
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 4.2e-28 129.8 228 37.7
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.1e-25 121.7 74 74.3
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-25 121.3 110 60.0
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 6.2e-24 115.9 155 48.4
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-21 107.5 133 47.4
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.3e-18 97.4 135 43.0
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-17 95.1 70 70.0
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-17 94.4 97 53.6
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 3.3e-17 93.6 57 73.7
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 4.3e-17 93.2 57 77.2
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 4.8e-16 89.7 89 57.3
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 9.1e-07 58.9 111 36.0
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 3.4e-06 57.0 43 62.8
arahy.Tifrunner.gnm1.ann1.5AIV52 Arachis hypogaea HOM05D001155 ORTHO05D001080 5.9e-06 56.2 36 72.2
arahy.Tifrunner.gnm1.ann1.CXRB51 Arachis hypogaea HOM05D004703 ORTHO05D015979 7.7e-06 55.8 35 74.3


User provided reference genes

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