Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0186851 Helianthus annuus HOM05D000764 ORTHO05D002819 1.8e-48 195.7 101 100.0
HanXRQChr14g0441631 Helianthus annuus HOM05D000764 ORTHO05D002819 2.0e-20 102.4 88 69.3
Lsat_1_v5_gn_2_78460 Lactuca sativa HOM05D000764 ORTHO05D002819 2.9e-19 98.6 88 63.6
Dinv33603 Davidia involucrata HOM05D000764 ORTHO05D002819 2.5e-18 95.5 89 61.8
ECA238G0650 Erigeron canadensis HOM05D000764 ORTHO05D002819 4.2e-18 94.7 88 63.6
TAR628G0296 Trochodendron aralioides HOM05D000764 ORTHO05D002819 5.5e-18 94.4 88 61.4
CAN.G693.4 Capsicum annuum HOM05D000764 ORTHO05D002819 9.4e-18 93.6 88 63.6
Hma1.2p1_0743F.1_g211470 Hydrangea macrophylla HOM05D000764 ORTHO05D002819 9.4e-18 93.6 88 64.8
GSVIVG01018821001 Vitis vinifera HOM05D000764 ORTHO05D002819 9.4e-18 93.6 94 59.6
Migut.L00041 Erythranthe guttata HOM05D000764 ORTHO05D002819 1.6e-17 92.8 88 62.5
GSVIVG01003605001 Vitis vinifera HOM05D000764 ORTHO05D002819 2.7e-17 92.0 88 59.1
PGSC0003DMG400012013 Solanum tuberosum HOM05D000764 ORTHO05D002819 3.6e-17 91.7 88 61.4
Oeu040047.2 Olea europaea HOM05D000230 ORTHO05D002819 4.7e-17 91.3 101 56.4
Sopen02g013340 Solanum pennellii HOM05D000764 ORTHO05D002819 6.1e-17 90.9 88 61.4
GSVIVG01003602001 Vitis vinifera HOM05D000764 ORTHO05D002819 6.1e-17 90.9 88 58.0
Dinv40061 Davidia involucrata HOM05D000764 ORTHO05D002819 7.9e-17 90.5 60 78.3
Nn6g32246 Nelumbo nucifera HOM05D000764 ORTHO05D002819 7.9e-17 90.5 88 58.0
Solyc02g062350.3 Solanum lycopersicum HOM05D000764 ORTHO05D002819 7.9e-17 90.5 88 61.4
Gohir.A12G061100 Gossypium hirsutum HOM05D000764 ORTHO05D002819 1.8e-16 89.4 88 60.2
Gohir.D12G061200 Gossypium hirsutum HOM05D000764 ORTHO05D002819 1.8e-16 89.4 88 60.2
Gorai.008G064300 Gossypium raimondii HOM05D000764 ORTHO05D002819 1.8e-16 89.4 88 60.2
MD15G1248800 Malus domestica HOM05D000764 ORTHO05D002819 1.8e-16 89.4 88 61.4
Nitab4.5_0006358g0020 Nicotiana tabacum HOM05D000764 ORTHO05D002819 1.8e-16 89.4 88 60.2
CSS0027393 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D002819 3.0e-16 88.6 88 61.4
CSS0038165 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D002819 3.0e-16 88.6 88 61.4
Nitab4.5_0000136g0090 Nicotiana tabacum HOM05D000764 ORTHO05D002819 3.0e-16 88.6 88 58.0
Thecc.01G022900 Theobroma cacao HOM05D000764 ORTHO05D002819 3.0e-16 88.6 88 60.2
MD02G1110900 Malus domestica HOM05D000764 ORTHO05D002819 5.1e-16 87.8 88 61.4
CiPaw.07G056200 Carya illinoinensis HOM05D000764 ORTHO05D002819 6.7e-16 87.4 88 55.7
COL.COLO4_21958 Corchorus olitorius HOM05D000764 ORTHO05D002819 6.7e-16 87.4 88 59.1
MSTRG.3827 Avicennia marina HOM05D000764 ORTHO05D002819 8.8e-16 87.0 88 60.2
Duzib147G1325 Durio zibethinus HOM05D000764 ORTHO05D002819 8.8e-16 87.0 88 58.0
Oeu052725.1 Olea europaea HOM05D000764 ORTHO05D002819 1.1e-15 86.7 88 58.0
Prupe.7G165300 Prunus persica HOM05D000764 ORTHO05D002819 1.1e-15 86.7 88 58.0
SalBow5G3073 Salvia bowleyana HOM05D000764 ORTHO05D002819 1.5e-15 86.3 88 59.1
SalBow6G0160 Salvia bowleyana HOM05D000764 ORTHO05D002819 1.5e-15 86.3 88 59.1
Haze_03806 Corylus avellana HOM05D000764 ORTHO05D002819 2.0e-15 85.9 88 58.0
DCAR_025990 Daucus carota HOM05D000764 ORTHO05D002819 2.0e-15 85.9 88 56.8
SGA_v2.0_scaffold47G17676 Striga asiatica HOM05D000764 ORTHO05D002819 3.3e-15 85.1 89 57.3
Duzib187G1047 Durio zibethinus HOM05D000764 ORTHO05D002819 4.4e-15 84.7 88 58.0
Peaxi162Scf00799g00006 Petunia axillaris HOM05D000764 ORTHO05D002819 4.4e-15 84.7 88 56.8
Actinidia26077 Actinidia chinensis HOM05D000764 ORTHO05D002819 5.7e-15 84.3 88 58.0
VMungo0251G3231 Vigna mungo HOM05D000764 ORTHO05D002819 5.7e-15 84.3 88 55.7
CANSAT01G3117 Cannabis sativa HOM05D000764 ORTHO05D002819 9.7e-15 83.6 88 56.8
Phvul.003G259500 Phaseolus vulgaris HOM05D000764 ORTHO05D002819 9.7e-15 83.6 88 54.5
CsaV3_4G005790 Cucumis sativus L. HOM05D000764 ORTHO05D002819 1.3e-14 83.2 88 54.5
Duzib264G0848 Durio zibethinus HOM05D000764 ORTHO05D002819 1.3e-14 83.2 88 55.7
PGR102G1582 Punica granatum HOM05D000764 ORTHO05D002819 1.3e-14 83.2 60 71.7
QL06p033956 Quercus lobata HOM05D000764 ORTHO05D002819 1.3e-14 83.2 88 53.4
ClCG07G008340 Citrullus lanatus HOM05D000764 ORTHO05D002819 1.7e-14 82.8 88 54.5
Cpa.g.sc6.216 Carica papaya HOM05D000764 ORTHO05D002819 2.2e-14 82.4 88 55.7
Glyma.02G050600 Glycine max HOM05D000764 ORTHO05D002819 2.2e-14 82.4 88 54.5
Sed0013618 Sechium edule HOM05D000764 ORTHO05D002819 2.2e-14 82.4 88 53.4
MELO3C016372.2 Cucumis melo HOM05D000764 ORTHO05D002819 2.8e-14 82.0 88 53.4
Ciclev10026225m.g Citrus clementina HOM05D000764 ORTHO05D002819 3.7e-14 81.6 88 54.5
RcHm_v2.0_Chr2g0099891 Rosa chinensis HOM05D000764 ORTHO05D002819 3.7e-14 81.6 87 57.5
Sabra07G0012500 Salix brachista HOM05D000764 ORTHO05D002819 4.8e-14 81.3 88 55.7
Cc07_g10440 Coffea canephora HOM05D000764 ORTHO05D002819 6.3e-14 80.9 89 55.1
Sed0014885 Sechium edule HOM05D000764 ORTHO05D002819 6.3e-14 80.9 88 52.3
TWI09G0964 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 8.2e-14 80.5 88 53.4
arahy.Tifrunner.gnm1.ann1.0H6YGR Arachis hypogaea HOM05D000764 ORTHO05D002819 1.4e-13 79.7 88 52.3
arahy.Tifrunner.gnm1.ann1.WYF852 Arachis hypogaea HOM05D000764 ORTHO05D002819 1.4e-13 79.7 88 52.3
Ca_22362_v3 Cicer arietinum L. HOM05D000764 ORTHO05D002819 1.4e-13 79.7 60 68.3
PSO210G6018 Papaver somniferum HOM05D000764 ORTHO05D002819 1.8e-13 79.3 88 51.1
PSO339G5835 Papaver somniferum HOM05D000764 ORTHO05D002819 3.1e-13 78.6 88 50.0
Eucgr.J02398 Eucalyptus grandis HOM05D000764 ORTHO05D002819 4.1e-13 78.2 88 53.4
TPR.G30048 Trifolium pratense HOM05D000764 ORTHO05D002819 4.1e-13 78.2 88 53.4
Lalb_Chr16g0391131 Lupinus albus HOM05D000764 ORTHO05D002819 5.3e-13 77.8 87 52.9
PSO170G2424 Papaver somniferum HOM05D000764 ORTHO05D002819 5.3e-13 77.8 88 50.0
vmacro01360 Vaccinium macrocarpon HOM05D000764 ORTHO05D002819 5.3e-13 77.8 60 65.0
Manes.01G142900 Manihot esculenta HOM05D000764 ORTHO05D002819 9.1e-13 77.0 88 54.5
PSO133G0056 Papaver somniferum HOM05D000764 ORTHO05D002819 1.2e-12 76.6 88 48.9
ATR0688G001 Amborella trichopoda HOM05D000764 ORTHO05D002819 1.6e-12 76.3 88 50.0
AUR62007653 Chenopodium quinoa HOM05D000764 ORTHO05D002819 1.6e-12 76.3 89 55.1
Potri.007G015600 Populus trichocarpa HOM05D000764 ORTHO05D002819 1.6e-12 76.3 89 51.7
Lj4g0000058 Lotus japonicus HOM05D000764 ORTHO05D002819 2.0e-12 75.9 88 48.9
TWI73G0351 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 2.0e-12 75.9 88 48.9
Lalb_Chr05g0229911 Lupinus albus HOM05D000764 ORTHO05D002819 2.6e-12 75.5 87 49.4
Nn5g29225 Nelumbo nucifera HOM05D000764 ORTHO05D002819 2.6e-12 75.5 60 63.3
THA.LOC104821319 Tarenaya hassleriana HOM05D000764 ORTHO05D002819 2.6e-12 75.5 88 53.4
FvH4_1g12151 Fragaria vesca HOM05D000764 ORTHO05D002819 7.7e-12 73.9 87 51.7
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 7.7e-12 73.9 87 51.7
Rhsim11G0153300 Rhododendron simsii HOM05D000764 ORTHO05D002819 1.0e-11 73.6 60 65.0
FAN23G0145 Fragaria x ananassa HOM05D000764 ORTHO05D002819 1.3e-11 73.2 87 51.7
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.3e-11 73.2 87 51.7
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.3e-11 73.2 87 51.7
RhsimUnG0124500 Rhododendron simsii HOM05D000764 ORTHO05D002819 1.3e-11 73.2 60 63.3
HPP92_014462 Vanilla planifolia HOM05D000764 ORTHO05D002819 1.3e-11 73.2 88 48.9
Thhalv10010613m.g Eutrema salsugineum HOM05D000764 ORTHO05D002819 2.9e-11 72.0 89 50.6
Psat4g097360 Pisum sativum HOM05D000764 ORTHO05D002819 2.9e-11 72.0 60 63.3
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 3.8e-11 71.6 89 49.4
Medtr8g076220 Medicago truncatula HOM05D000764 ORTHO05D002819 5.0e-11 71.2 60 61.7
Sp5g11070 Schrenkiella parvula HOM05D000764 ORTHO05D002819 5.0e-11 71.2 89 49.4
BraA03t13923Z Brassica rapa HOM05D000764 ORTHO05D002819 6.5e-11 70.9 89 49.4
CDE05G3263 Ceratophyllum demersum HOM05D000764 ORTHO05D002819 6.5e-11 70.9 60 60.0
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 8.5e-11 70.5 89 49.4
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 8.5e-11 70.5 89 49.4
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 1.1e-10 70.1 60 63.3
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 1.5e-10 69.7 60 63.3
Aqoxy3G00558 Aquilegia oxysepala HOM05D000764 ORTHO05D002819 1.9e-10 69.3 88 44.3
Aqoxy6G02562 Aquilegia oxysepala HOM05D000764 ORTHO05D002819 1.9e-10 69.3 88 44.3
C07p46190 Brassica napus HOM05D000764 ORTHO05D002819 1.9e-10 69.3 89 48.3
BolC7t45135H Brassica oleracea HOM05D000764 ORTHO05D002819 1.9e-10 69.3 89 48.3
CDE02G3649 Ceratophyllum demersum HOM05D000722 ORTHO05D000590 1.9e-10 69.3 60 58.3
Hund16477 Selenicereus undatus HOM05D000764 ORTHO05D002819 1.9e-10 69.3 61 63.9
CDE05G3536 Ceratophyllum demersum HOM05D000764 ORTHO05D002819 2.5e-10 68.9 60 58.3
Ah.03g141580 Amaranthus hybridus HOM05D000764 ORTHO05D002819 4.2e-10 68.2 89 48.3
CARHR160740 Cardamine hirsuta HOM05D000764 ORTHO05D002819 4.2e-10 68.2 60 61.7
Carub.0005s1754 Capsella rubella HOM05D000764 ORTHO05D002819 7.2e-10 67.4 89 47.2
BcaC06g33052 Brassica carinata HOM05D000764 ORTHO05D002819 9.4e-10 67.0 89 47.2
Sc16g0002370 Simmondsia chinensis HOM05D000764 ORTHO05D002819 3.6e-09 65.1 88 44.3
AL5G31570 Arabidopsis lyrata HOM05D000764 ORTHO05D002819 4.7e-09 64.7 89 46.1
AT3G51140 Arabidopsis thaliana HOM05D000764 ORTHO05D002819 4.7e-09 64.7 89 46.1
Aa31LG1G14810 Aethionema arabicum HOM05D000764 ORTHO05D002819 6.1e-09 64.3 89 44.9
Zm00001eb398380 Zea mays HOM05D000764 ORTHO05D002819 8.0e-09 63.9 94 44.7
A01p23610 Brassica napus HOM05D000764 ORTHO05D002819 1.0e-08 63.5 60 58.3
Lj1g0001947 Lotus japonicus HOM05D000764 ORTHO05D002819 1.4e-08 63.2 81 48.1
Zm00001eb011060 Zea mays HOM05D000764 ORTHO05D002819 3.3e-07 58.5 88 44.3
Os03g0255200 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D002819 7.5e-07 57.4 94 40.4
BcaC09g50084 Brassica carinata HOM05D000764 ORTHO05D002819 1.3e-06 56.6 56 57.1
C01p29290 Brassica napus HOM05D000764 ORTHO05D002819 1.3e-06 56.6 56 57.1
Peaxi162Scf00083g01232 Petunia axillaris HOM05D000764 ORTHO05D002819 1.3e-06 56.6 81 48.1


User provided reference genes

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