Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 0.0e+00 1131.3 756 100.0
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 3.3e-131 473.4 764 62.7
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 8.1e-106 389.0 868 50.1
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 8.4e-87 325.9 758 52.0
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 2.6e-64 251.1 871 46.5
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.6e-43 181.4 823 27.9
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 2.6e-35 154.8 280 41.8
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.8e-34 151.4 280 41.4
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 8.3e-34 149.8 953 25.2
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 8.3e-34 149.8 942 24.8
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 3.5e-32 144.4 906 26.7
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 5.9e-32 143.7 950 24.6
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 5.9e-32 143.7 286 43.0
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 7.7e-32 143.3 233 45.1
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 8.5e-31 139.8 241 45.6
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.5e-30 139.0 219 42.5
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 2.5e-30 138.3 1017 30.6
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 2.5e-30 138.3 285 41.8
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 4.2e-30 137.5 292 39.7
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 5.5e-30 137.1 294 38.4
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 7.2e-30 136.7 1005 25.4
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 7.2e-30 136.7 249 43.4
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 9.5e-30 136.3 210 45.2
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 9.5e-30 136.3 972 27.8
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 2.1e-29 135.2 784 25.5
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 6.1e-29 133.7 253 41.9
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 2.3e-28 131.7 249 42.2
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 4.0e-28 131.0 242 43.0
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 5.2e-28 130.6 801 26.7
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 8.8e-28 129.8 272 39.3
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 1.2e-27 129.4 296 38.2
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.2e-27 129.4 296 38.2
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 1.2e-27 129.4 276 40.6
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 1.5e-27 129.0 1027 24.9
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 2.0e-27 128.6 275 40.0
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 3.4e-27 127.9 225 43.6
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 3.4e-27 127.9 219 43.4
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 4.4e-27 127.5 972 24.5
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 5.7e-27 127.1 144 49.3
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 5.7e-27 127.1 198 44.4
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 7.5e-27 126.7 144 49.3
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 7.5e-27 126.7 254 40.6
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 9.8e-27 126.3 254 40.2
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 1.3e-26 125.9 278 39.6
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.7e-26 125.6 870 24.9
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 4.9e-26 124.0 304 36.5
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 6.3e-26 123.6 122 56.6
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 1.8e-25 122.1 1008 24.6
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.8e-25 122.1 1000 24.5
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 2.4e-25 121.7 293 37.2
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 4.1e-25 120.9 1108 24.1
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 7.0e-25 120.2 906 24.4
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 1.2e-24 119.4 259 38.6
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 2.7e-24 118.2 267 39.3
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.5e-24 117.9 868 24.7
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 3.5e-24 117.9 276 37.7
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 4.5e-24 117.5 249 39.0
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 4.5e-24 117.5 880 24.7
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 5.9e-24 117.1 286 38.1
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 7.7e-24 116.7 307 35.8
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.7e-23 115.5 245 38.8
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 2.3e-23 115.2 267 39.0
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.9e-23 114.8 307 35.2
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 6.6e-23 113.6 997 24.3
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 8.6e-23 113.2 1026 24.1
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.1e-22 112.8 268 36.6
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 1.5e-22 112.5 227 38.3
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.9e-22 112.1 251 39.4
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.9e-22 112.1 954 24.2
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 2.5e-22 111.7 245 36.3
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.5e-22 111.7 891 24.5
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 3.3e-22 111.3 231 36.8
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 3.3e-22 111.3 259 39.0
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 4.3e-22 110.9 127 47.2
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 5.6e-22 110.5 323 32.5
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 9.5e-22 109.8 419 29.8
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 1.6e-21 109.0 194 34.0
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 3.6e-21 107.8 362 34.0
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 3.6e-21 107.8 115 52.2
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.0e-20 106.3 889 25.3
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 1.4e-20 105.9 287 35.2
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 1.8e-20 105.5 409 30.1
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 4.0e-20 104.4 938 23.6
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 8.9e-20 103.2 257 33.5
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 2.6e-19 101.7 193 37.8
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 3.4e-19 101.3 166 43.4
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 3.4e-19 101.3 931 23.7
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 4.4e-19 100.9 229 37.1
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 9.8e-19 99.8 237 34.6
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 1.3e-18 99.4 156 39.1
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 1.3e-18 99.4 826 24.2
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 3.7e-18 97.8 163 36.8
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 4.9e-18 97.4 296 29.4
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 6.4e-18 97.1 187 34.8
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 1.4e-17 95.9 157 38.2
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 1.8e-17 95.5 93 53.8
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 1.8e-17 95.5 161 38.5
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 1.8e-17 95.5 161 38.5
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 1.8e-17 95.5 124 48.4
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 2.4e-17 95.1 968 24.2
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 4.1e-17 94.4 386 28.2
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 7.0e-17 93.6 181 36.5
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 7.0e-17 93.6 160 38.1
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 7.0e-17 93.6 144 46.5
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 9.2e-17 93.2 1004 24.3
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 1.6e-16 92.4 259 33.6
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 1.6e-16 92.4 412 29.9
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 2.0e-16 92.0 54 66.7
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 4.6e-16 90.9 321 29.0
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 4.6e-16 90.9 179 36.9
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 3.9e-15 87.8 141 38.3
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 1.1e-14 86.3 241 30.7
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.5e-14 85.9 850 24.0
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 1.9e-14 85.5 141 38.3
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 2.5e-14 85.1 837 23.7
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 9.5e-14 83.2 74 59.5
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 9.5e-14 83.2 958 24.9
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.2e-13 82.8 975 23.3
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 1.8e-12 79.0 332 27.7
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 2.3e-12 78.6 936 21.9
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 2.3e-12 78.6 420 27.4
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.3e-12 78.6 810 23.1
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 5.2e-12 77.4 151 37.7
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 1.5e-11 75.9 89 43.8
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 3.4e-11 74.7 370 27.6
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 3.4e-11 74.7 417 25.7
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.7e-10 72.4 309 29.1
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 2.2e-10 72.0 896 22.1
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-09 69.3 917 22.4
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 2.4e-09 68.6 35 74.3
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 5.4e-09 67.4 99 39.4
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 7.0e-09 67.0 128 35.2
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 1.2e-08 66.2 43 58.1
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 1.6e-08 65.9 119 40.3
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 1.6e-08 65.9 215 34.4
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 2.7e-08 65.1 51 56.9
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 1.3e-07 62.8 374 25.7
SMO347G0454 Selaginella moellendorffii HOM05D002473 ORTHO05D002666 6.6e-07 60.5 128 27.3
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 1.5e-06 59.3 49 55.1
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 5.6e-06 57.4 119 35.3


User provided reference genes

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