Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.4e-270 935.6 446 100.0
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 1.6e-255 885.6 446 94.2
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 1.6e-207 726.1 434 78.8
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 2.0e-205 719.2 456 75.4
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 8.5e-204 713.8 456 74.3
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.2e-202 709.9 453 74.0
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.4e-201 706.4 456 73.7
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 2.3e-201 705.7 449 75.3
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 6.7e-201 704.1 457 72.9
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 8.8e-201 703.7 443 76.7
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.1e-200 703.4 453 73.7
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 7.4e-200 700.7 456 72.8
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.3e-199 699.9 460 72.6
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.7e-199 699.5 457 71.6
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 4.8e-199 698.0 453 73.7
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 4.8e-199 698.0 457 72.4
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.1e-198 696.8 457 71.8
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.1e-198 696.8 457 71.8
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 2.4e-198 695.7 467 72.2
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.4e-198 695.7 453 73.3
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 3.1e-198 695.3 451 73.4
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 5.9e-197 691.0 453 72.8
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 7.7e-197 690.6 460 72.0
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 7.7e-197 690.6 452 72.3
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.3e-196 689.9 457 72.4
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 1.3e-196 689.9 459 71.5
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 2.2e-196 689.1 448 73.2
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 2.9e-196 688.7 456 71.7
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 5.0e-196 688.0 457 72.4
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 4.2e-195 684.9 449 72.6
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 9.4e-195 683.7 455 72.3
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 2.1e-194 682.6 458 71.4
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 1.8e-193 679.5 457 71.1
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.5e-192 676.4 453 71.3
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 2.6e-192 675.6 449 71.7
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 7.4e-192 674.1 455 70.1
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 9.7e-192 673.7 453 69.3
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 2.2e-191 672.5 446 71.5
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 4.8e-191 671.4 459 68.8
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 8.2e-191 670.6 453 69.3
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 1.4e-190 669.8 457 70.2
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 2.0e-189 666.0 452 70.4
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 2.0e-189 666.0 444 70.5
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 4.5e-189 664.8 419 74.2
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.1e-187 660.2 449 69.7
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 1.6e-186 656.4 455 68.1
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 2.1e-186 656.0 456 67.8
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.7e-186 655.6 456 67.8
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.0e-185 653.7 446 69.3
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.4e-185 653.3 431 71.9
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.9e-185 651.7 456 67.3
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 2.0e-184 649.4 432 71.5
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 2.6e-184 649.0 422 73.2
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 3.3e-184 648.7 451 67.2
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 7.4e-184 647.5 421 72.4
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 7.4e-184 647.5 442 71.5
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.3e-183 646.7 421 72.4
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.7e-183 645.2 421 71.7
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 8.2e-183 644.0 438 71.0
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 7.0e-182 641.0 454 68.7
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 3.5e-181 638.6 405 73.8
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 7.7e-181 637.5 465 67.5
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 5.0e-180 634.8 463 66.5
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 5.0e-180 634.8 455 67.7
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 8.5e-180 634.0 471 64.8
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 1.5e-179 633.3 455 65.9
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 7.2e-179 630.9 457 67.6
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 9.4e-179 630.6 457 66.5
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.4e-179 630.6 437 69.8
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.1e-178 629.4 466 67.0
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.7e-178 628.2 458 67.5
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.2e-177 624.8 452 67.3
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 5.2e-177 624.8 447 66.9
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.5e-176 623.2 394 74.9
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 2.2e-175 619.4 438 68.3
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 4.8e-175 618.2 451 65.4
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.1e-174 615.1 453 64.0
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 4.1e-174 615.1 452 63.1
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 9.1e-174 614.0 459 63.6
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.6e-173 613.2 453 63.6
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 2.0e-173 612.8 459 66.0
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 2.2e-172 609.4 454 63.7
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 8.5e-172 607.4 491 61.5
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 3.2e-171 605.5 455 63.1
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 2.1e-170 602.8 460 65.0
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 8.0e-170 600.9 458 62.2
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 1.0e-169 600.5 456 61.8
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.8e-169 599.7 458 62.0
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 2.3e-169 599.4 465 64.5
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 2.3e-169 599.4 458 62.4
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 5.2e-169 598.2 483 62.7
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 8.8e-169 597.4 458 64.2
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 2.6e-168 595.9 458 61.6
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 2.6e-168 595.9 458 61.6
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 8.3e-167 590.9 458 62.4
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 8.3e-167 590.9 451 63.9
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.1e-166 590.5 473 60.7
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 2.9e-164 582.4 461 62.0
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.5e-163 580.1 434 66.4
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 3.0e-161 572.4 384 72.4
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 2.6e-160 569.3 379 72.6
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 9.8e-160 567.4 452 59.7
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 2.2e-159 566.2 405 65.2
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 2.2e-159 566.2 393 70.7
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 6.3e-159 564.7 364 74.5
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.0e-153 547.4 540 53.0
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.0e-153 547.4 470 58.5
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 8.9e-153 544.3 486 56.4
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 2.0e-152 543.1 403 65.3
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 2.5e-147 526.2 412 62.1
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 2.8e-146 522.7 418 57.9
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 3.6e-146 522.3 452 54.6
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 1.8e-145 520.0 423 56.0
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 8.9e-145 517.7 438 56.4
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 6.4e-143 511.5 420 61.2
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.9e-135 485.3 349 66.8
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 4.0e-129 465.7 415 54.7
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 3.4e-128 462.6 406 57.4
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 3.0e-116 422.9 451 48.6
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 6.6e-116 421.8 345 59.7
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 5.6e-115 418.7 345 59.1
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 6.2e-114 415.2 290 70.3
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 8.1e-114 414.8 289 68.5
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.2e-110 402.9 456 50.4
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 2.7e-109 399.8 415 47.2
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.3e-106 391.0 416 51.2
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 1.3e-106 391.0 324 62.0
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 2.9e-103 379.8 254 71.3
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 6.7e-92 342.0 412 42.5
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 1.2e-88 331.3 430 41.9
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 1.4e-84 317.8 206 70.9
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 3.6e-77 293.1 274 58.8
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 2.2e-74 283.9 214 68.7
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.1e-62 245.0 175 69.7
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 2.5e-54 217.2 225 54.7
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 9.4e-54 215.3 191 57.6
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 4.4e-51 206.5 119 78.2
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.0e-47 195.3 192 52.6
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.6e-40 171.4 154 54.5
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 8.6e-39 165.6 109 70.6
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.6e-37 161.4 230 40.9
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.1e-37 159.5 255 38.8
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.2e-35 155.2 253 38.7
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 5.8e-35 152.9 85 77.6
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 5.0e-31 139.8 191 42.9
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 8.6e-31 139.0 93 74.2
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 8.6e-23 112.5 71 67.6
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.5e-22 111.7 253 32.4
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.1e-21 107.8 85 60.0
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 2.6e-19 100.9 130 40.8
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 1.7e-18 98.2 58 70.7
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 2.3e-15 87.8 68 67.6
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.9e-12 75.9 77 51.9
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 1.5e-11 75.1 78 52.6
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.2e-08 65.5 36 80.6
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.1e-08 64.7 38 68.4
HanXRQChr07g0191491 Helianthus annuus HOM05D004439 ORTHO05D227226 6.6e-07 59.7 57 59.6


User provided reference genes

Program Settings